Wall clock time and date at job start Tue Mar 31 2020 03:13:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.34771 * 120.00172 * 2 1
4 4 O 1.21287 * 120.00107 * 179.97438 * 3 2 1
5 5 C 1.50697 * 120.00360 * 359.97438 * 3 2 1
6 6 H 1.09006 * 110.48365 * 38.75546 * 5 3 2
7 7 C 1.54098 * 110.76147 * 276.01941 * 5 3 2
8 8 N 1.47052 * 103.86348 * 241.67552 * 7 5 3
9 9 C 1.46500 * 125.41166 * 179.86934 * 8 7 5
10 10 C 1.33952 * 109.17881 * 359.60624 * 8 7 5
11 11 O 1.21585 * 123.03943 * 180.28591 * 10 8 7
12 12 N 1.33952 * 113.91437 * 0.26111 * 10 8 7
13 13 C 1.46500 * 119.99677 * 180.02562 * 2 1 3
14 14 H 1.08999 * 110.64189 * 178.31470 * 13 2 1
15 15 C 1.55153 * 110.72347 * 54.97389 * 13 2 1
16 16 C 1.54906 * 101.58453 * 277.13872 * 15 13 2
17 17 N 1.47420 * 104.83184 * 322.99333 * 16 15 13
18 18 C 1.36937 * 125.64793 * 204.16711 * 17 16 15
19 19 H 1.08004 * 119.99976 * 342.04888 * 18 17 16
20 20 C 1.38811 * 120.00560 * 162.04836 * 18 17 16
21 21 N 1.31619 * 120.00573 * 156.86351 * 20 18 17
22 22 Si 1.86807 * 119.99606 * 336.86692 * 20 18 17
23 23 H 1.48497 * 109.47028 * 84.83743 * 22 20 18
24 24 H 1.48505 * 109.46868 * 204.83425 * 22 20 18
25 25 H 1.48497 * 109.47149 * 324.83256 * 22 20 18
26 26 C 1.47019 * 108.70454 * 24.12273 * 17 16 15
27 27 H 1.09005 * 109.47092 * 89.99583 * 1 2 3
28 28 H 1.08994 * 109.47845 * 210.00066 * 1 2 3
29 29 H 1.09000 * 109.47016 * 330.00175 * 1 2 3
30 30 H 1.09005 * 110.66127 * 123.02450 * 7 5 3
31 31 H 1.09000 * 110.43502 * 0.21667 * 7 5 3
32 32 H 1.09000 * 109.47243 * 179.71770 * 9 8 7
33 33 H 1.08998 * 109.47384 * 59.71602 * 9 8 7
34 34 H 1.09002 * 109.46920 * 299.71496 * 9 8 7
35 35 H 0.96997 * 125.40657 * 180.02562 * 12 10 8
36 36 H 1.09000 * 111.00188 * 35.21873 * 15 13 2
37 37 H 1.09006 * 111.00389 * 159.06172 * 15 13 2
38 38 H 1.09000 * 110.36920 * 204.14918 * 16 15 13
39 39 H 1.09006 * 110.45974 * 81.87468 * 16 15 13
40 40 H 0.96998 * 120.00162 * 180.02562 * 21 20 18
41 41 H 1.09007 * 109.88163 * 239.52504 * 26 17 16
42 42 H 1.08999 * 109.88439 * 118.36463 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1388 1.1671 0.0000
4 8 3.3517 1.1671 0.0005
5 6 1.3855 2.4723 -0.0006
6 1 0.5049 2.4047 0.6383
7 6 0.9821 2.8695 -1.4338
8 7 1.6774 4.1463 -1.6545
9 6 1.6197 4.9432 -2.8824
10 6 2.3673 4.4679 -0.5523
11 8 3.0324 5.4814 -0.4586
12 7 2.2578 3.5721 0.4376
13 6 2.1974 -1.2688 -0.0006
14 1 3.2725 -1.0918 -0.0305
15 6 1.7505 -2.1601 -1.1893
16 6 0.4717 -2.8220 -0.6183
17 7 0.7743 -3.0624 0.8044
18 6 0.1819 -4.0085 1.5975
19 1 -0.7556 -4.4538 1.2985
20 6 0.7861 -4.3954 2.7858
21 7 0.0632 -4.9246 3.7500
22 14 2.6255 -4.1650 3.0165
23 1 2.8958 -2.7839 3.4903
24 1 3.1244 -5.1392 4.0202
25 1 3.3186 -4.3889 1.7223
26 6 1.8181 -2.1187 1.2304
27 1 -0.3633 0.0001 -1.0277
28 1 -0.3634 -0.8899 0.5138
29 1 -0.3633 0.8900 0.5138
30 1 -0.0972 3.0040 -1.5063
31 1 1.3238 2.1195 -2.1471
32 1 2.2263 5.8407 -2.7620
33 1 0.5867 5.2272 -3.0831
34 1 2.0032 4.3546 -3.7159
35 1 2.6857 3.6385 1.3055
36 1 1.5193 -1.5551 -2.0659
37 1 2.5075 -2.9091 -1.4222
38 1 0.2723 -3.7645 -1.1282
39 1 -0.3813 -2.1505 -0.7165
40 1 0.4854 -5.1945 4.5805
41 1 2.6907 -2.6669 1.5857
42 1 1.4349 -1.4746 2.0218
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033336082.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:44
Heat of formation + Delta-G solvation = -16.221469 kcal
Electronic energy + Delta-G solvation = -25122.916206 eV
Core-core repulsion = 21525.467619 eV
Total energy + Delta-G solvation = -3597.448588 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-42.52110 -41.02603 -39.23905 -37.39786 -36.08963 -35.12844 -34.24049 -31.76500
-30.50753 -29.83248 -28.16330 -27.66931 -26.12193 -24.92357 -22.59793 -21.99666
-21.61240 -20.33370 -19.09427 -18.83329 -18.61413 -17.77625 -17.51030 -17.14568
-16.56141 -16.40594 -15.72682 -15.29988 -15.25210 -15.17004 -15.02000 -14.66876
-14.46771 -14.26159 -13.86162 -13.54456 -13.36194 -13.32547 -13.14036 -13.07345
-12.99401 -12.84213 -12.38204 -12.24481 -12.08317 -11.86406 -11.56412 -11.49285
-11.23011 -10.77791 -10.37504 -9.71872 -9.58296 -9.05553 -8.20428 -5.43286
1.24284 1.26032 1.34306 1.41360 1.57937 1.73883 2.07337 2.37233
2.84889 3.01050 3.23934 3.27864 3.37672 3.72378 3.76564 3.83129
4.04775 4.16311 4.30881 4.39305 4.50082 4.52575 4.55870 4.72147
4.74312 4.76955 4.85706 4.87856 4.94238 4.98549 5.02812 5.16254
5.30993 5.50186 5.61978 5.68905 5.96758 6.10540 6.28758 6.37053
6.75240 6.99080 7.41311 7.53676 8.09702 8.99759
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.028511 B = 0.003950 C = 0.003766
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 981.835211 B = 7087.184154 C = 7433.826108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.053 3.947
2 N -0.587 5.587
3 C 0.501 3.499
4 O -0.577 6.577
5 C 0.108 3.892
6 H 0.155 0.845
7 C 0.111 3.889
8 N -0.636 5.636
9 C 0.113 3.887
10 C 0.693 3.307
11 O -0.635 6.635
12 N -0.719 5.719
13 C 0.134 3.866
14 H 0.093 0.907
15 C -0.126 4.126
16 C 0.120 3.880
17 N -0.622 5.622
18 C -0.223 4.223
19 H 0.074 0.926
20 C -0.031 4.031
21 N -0.951 5.951
22 Si 0.938 3.062
23 H -0.287 1.287
24 H -0.312 1.312
25 H -0.275 1.275
26 C 0.111 3.889
27 H 0.099 0.901
28 H 0.070 0.930
29 H 0.100 0.900
30 H 0.144 0.856
31 H 0.094 0.906
32 H 0.065 0.935
33 H 0.093 0.907
34 H 0.077 0.923
35 H 0.432 0.568
36 H 0.111 0.889
37 H 0.076 0.924
38 H 0.048 0.952
39 H 0.068 0.932
40 H 0.261 0.739
41 H 0.010 0.990
42 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.696 16.420 -15.602 22.950
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 N -0.318 5.318
3 C 0.288 3.712
4 O -0.456 6.456
5 C -0.002 4.002
6 H 0.172 0.828
7 C -0.012 4.012
8 N -0.375 5.375
9 C -0.027 4.027
10 C 0.393 3.607
11 O -0.517 6.517
12 N -0.378 5.378
13 C 0.030 3.970
14 H 0.111 0.889
15 C -0.165 4.165
16 C -0.004 4.004
17 N -0.349 5.349
18 C -0.351 4.351
19 H 0.092 0.908
20 C -0.226 4.226
21 N -0.598 5.598
22 Si 0.771 3.229
23 H -0.214 1.214
24 H -0.241 1.241
25 H -0.202 1.202
26 C -0.015 4.015
27 H 0.117 0.883
28 H 0.089 0.911
29 H 0.118 0.882
30 H 0.161 0.839
31 H 0.112 0.888
32 H 0.084 0.916
33 H 0.112 0.888
34 H 0.096 0.904
35 H 0.274 0.726
36 H 0.129 0.871
37 H 0.094 0.906
38 H 0.066 0.934
39 H 0.086 0.914
40 H 0.070 0.930
41 H 0.028 0.972
42 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges -2.832 16.878 -15.568 23.136
hybrid contribution 1.523 -0.719 1.468 2.234
sum -1.309 16.159 -14.101 21.487
Atomic orbital electron populations
1.22487 0.76714 1.04937 1.04658 1.47839 1.08651 1.04092 1.71252
1.21324 0.87832 0.86143 0.75895 1.90726 1.15912 1.87603 1.51343
1.22179 0.94078 0.84041 0.99870 0.82803 1.22559 1.01030 0.85345
0.92288 1.47207 1.51071 1.24624 1.14567 1.21643 1.03943 0.94756
0.82399 1.16149 0.79941 0.82863 0.81779 1.90906 1.48133 1.29581
1.83122 1.44954 1.53957 1.21676 1.17246 1.21833 0.96968 0.83196
0.95051 0.88885 1.23064 0.98239 0.98332 0.96856 1.22169 0.96595
0.99143 0.82485 1.44909 1.44735 1.36901 1.08355 1.18641 1.01846
1.14485 1.00149 0.90809 1.25435 1.00323 1.00295 0.96499 1.69934
1.35897 1.48629 1.05318 0.86091 0.84669 0.75920 0.76258 1.21432
1.24117 1.20161 1.21959 0.91456 0.91464 0.96621 0.88314 0.91078
0.88211 0.83880 0.88814 0.91576 0.88813 0.90438 0.72610 0.87099
0.90574 0.93404 0.91448 0.93007 0.97237 0.95256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.83 8.33 127.77 1.06 1.90 16
2 N -0.59 -13.48 2.82 -815.99 -2.30 -15.79 16
3 C 0.50 12.01 6.79 87.66 0.60 12.60 16
4 O -0.58 -19.65 15.97 -3.05 -0.05 -19.70 16
5 C 0.11 1.68 3.34 44.51 0.15 1.83 16
6 H 0.15 1.33 6.31 -2.38 -0.02 1.32 16
7 C 0.11 1.15 7.30 86.65 0.63 1.78 16
8 N -0.64 -11.13 3.36 -863.44 -2.90 -14.03 16
9 C 0.11 1.35 11.21 127.77 1.43 2.78 16
10 C 0.69 18.21 8.60 179.57 1.55 19.75 16
11 O -0.64 -22.48 17.29 -3.98 -0.07 -22.55 16
12 N -0.72 -15.99 5.63 -460.34 -2.59 -18.59 16
13 C 0.13 4.08 3.58 46.18 0.17 4.24 16
14 H 0.09 3.11 6.99 -2.39 -0.02 3.09 16
15 C -0.13 -3.18 6.53 31.98 0.21 -2.98 16
16 C 0.12 3.66 6.35 86.85 0.55 4.21 16
17 N -0.62 -26.59 2.79 -692.00 -1.93 -28.52 16
18 C -0.22 -11.87 10.57 84.03 0.89 -10.98 16
19 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16
20 C -0.03 -1.75 5.44 84.86 0.46 -1.29 16
21 N -0.95 -58.33 13.97 21.65 0.30 -58.02 16
22 Si 0.94 47.49 24.38 68.60 1.67 49.16 16
23 H -0.29 -14.26 6.85 99.48 0.68 -13.58 16
24 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16
25 H -0.28 -13.51 6.86 99.48 0.68 -12.83 16
26 C 0.11 4.48 4.25 86.73 0.37 4.85 16
27 H 0.10 0.84 7.99 -2.38 -0.02 0.82 16
28 H 0.07 1.69 5.19 -2.39 -0.01 1.68 16
29 H 0.10 0.90 5.94 -2.39 -0.01 0.89 16
30 H 0.14 0.24 8.14 -2.38 -0.02 0.22 16
31 H 0.09 0.91 7.73 -2.39 -0.02 0.89 16
32 H 0.07 1.08 7.52 -2.39 -0.02 1.06 16
33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
35 H 0.43 9.62 8.96 -92.71 -0.83 8.78 16
36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16
37 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16
38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
39 H 0.07 1.70 5.54 -2.38 -0.01 1.69 16
40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16
41 H 0.01 0.47 3.32 -2.38 -0.01 0.46 16
42 H 0.03 1.27 8.04 -2.39 -0.02 1.25 16
Total: -1.00 -83.91 328.08 0.37 -83.54
By element:
Atomic # 1 Polarization: 5.62 SS G_CDS: 0.18 Total: 5.80 kcal
Atomic # 6 Polarization: 30.63 SS G_CDS: 8.06 Total: 38.69 kcal
Atomic # 7 Polarization: -125.52 SS G_CDS: -9.42 Total: -134.94 kcal
Atomic # 8 Polarization: -42.13 SS G_CDS: -0.12 Total: -42.25 kcal
Atomic # 14 Polarization: 47.49 SS G_CDS: 1.67 Total: 49.16 kcal
Total: -83.91 0.37 -83.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033336082.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.315 kcal
(2) G-P(sol) polarization free energy of solvation -83.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.537 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.221 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds