Wall clock time and date at job start Tue Mar 31 2020 03:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34781 * 119.99939 * 2 1 4 4 O 1.21277 * 120.00017 * 5.59879 * 3 2 1 5 5 C 1.50705 * 120.00057 * 185.59579 * 3 2 1 6 6 C 1.52995 * 109.54134 * 55.52647 * 5 3 2 7 7 C 1.53171 * 109.54195 * 295.26054 * 5 3 2 8 8 C 1.53092 * 109.16452 * 297.11134 * 7 5 3 9 9 O 1.42904 * 109.41362 * 302.39476 * 8 7 5 10 10 C 1.42900 * 114.10031 * 61.15825 * 9 8 7 11 11 C 1.53094 * 109.41251 * 298.84303 * 10 9 8 12 12 C 1.46503 * 120.00139 * 179.97438 * 2 1 3 13 13 H 1.09003 * 110.77885 * 179.60687 * 12 2 1 14 14 C 1.55401 * 110.85601 * 302.91077 * 12 2 1 15 15 C 1.54902 * 101.66501 * 153.69834 * 14 12 2 16 16 N 1.47428 * 104.83705 * 323.07736 * 15 14 12 17 17 C 1.36929 * 125.64877 * 204.09720 * 16 15 14 18 18 H 1.08005 * 119.99794 * 171.69016 * 17 16 15 19 19 C 1.38807 * 120.00425 * 351.68397 * 17 16 15 20 20 N 1.31626 * 120.00070 * 3.99787 * 19 17 16 21 21 Si 1.86802 * 120.00614 * 183.99219 * 19 17 16 22 22 H 1.48503 * 109.46854 * 94.99419 * 21 19 17 23 23 H 1.48493 * 109.47446 * 215.00321 * 21 19 17 24 24 H 1.48505 * 109.46614 * 335.00176 * 21 19 17 25 25 C 1.47025 * 108.69864 * 24.12443 * 16 15 14 26 26 H 1.09004 * 109.47180 * 275.02372 * 1 2 3 27 27 H 1.08999 * 109.47305 * 35.02710 * 1 2 3 28 28 H 1.09002 * 109.47184 * 155.02851 * 1 2 3 29 29 H 1.09003 * 109.47493 * 68.14063 * 6 5 3 30 30 H 1.09000 * 109.47264 * 188.14666 * 6 5 3 31 31 H 1.09007 * 109.47314 * 308.14550 * 6 5 3 32 32 H 1.08998 * 109.52762 * 57.01805 * 7 5 3 33 33 H 1.09007 * 109.52287 * 177.20779 * 7 5 3 34 34 H 1.09002 * 109.48311 * 182.41252 * 8 7 5 35 35 H 1.08998 * 109.49305 * 62.38399 * 8 7 5 36 36 H 1.08993 * 109.48641 * 178.85673 * 10 9 8 37 37 H 1.08999 * 109.48869 * 58.82516 * 10 9 8 38 38 H 1.08999 * 109.51895 * 297.69729 * 11 10 9 39 39 H 1.09004 * 109.57385 * 177.54155 * 11 10 9 40 40 H 1.09001 * 110.88843 * 35.62470 * 14 12 2 41 41 H 1.08998 * 111.03593 * 271.83261 * 14 12 2 42 42 H 1.09004 * 110.36709 * 204.23467 * 15 14 12 43 43 H 1.09003 * 110.46347 * 81.96514 * 15 14 12 44 44 H 0.96990 * 120.00202 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.87709 * 118.36348 * 25 16 15 46 46 H 1.08997 * 109.88487 * 239.37113 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5368 2.2150 0.1025 5 6 3.6405 1.1704 -0.1273 6 6 4.0484 0.4143 -1.3932 7 6 4.2600 0.4926 1.0987 8 6 3.9098 1.3011 2.3506 9 8 4.3799 2.6419 2.1970 10 6 3.7991 3.3411 1.0944 11 6 4.1448 2.6144 -0.2080 12 6 2.1975 -1.2687 0.0006 13 1 3.2734 -1.0941 -0.0065 14 6 1.7908 -2.1418 1.2201 15 6 2.0834 -3.5694 0.6947 16 7 1.7048 -3.5325 -0.7296 17 6 1.3450 -4.6143 -1.4880 18 1 0.9558 -4.4693 -2.4850 19 6 1.4807 -5.8972 -0.9757 20 7 1.8804 -6.0710 0.2663 21 14 1.0958 -7.3771 -2.0486 22 1 2.3481 -7.8756 -2.6719 23 1 0.4962 -8.4501 -1.2154 24 1 0.1371 -6.9818 -3.1116 25 6 1.7782 -2.1417 -1.2009 26 1 -0.3634 0.0900 1.0237 27 1 -0.3634 0.8415 -0.5898 28 1 -0.3634 -0.9316 -0.4339 29 1 3.7329 0.9784 -2.2710 30 1 5.1313 0.2915 -1.4101 31 1 3.5714 -0.5659 -1.4006 32 1 3.8637 -0.5182 1.1953 33 1 5.3431 0.4506 0.9833 34 1 4.3838 0.8472 3.2209 35 1 2.8286 1.3085 2.4882 36 1 4.1932 4.3567 1.0596 37 1 2.7164 3.3753 1.2151 38 1 5.2255 2.6155 -0.3498 39 1 3.6669 3.1208 -1.0467 40 1 0.7324 -2.0194 1.4501 41 1 2.4070 -1.9114 2.0891 42 1 1.4784 -4.3018 1.2293 43 1 3.1426 -3.8044 0.7997 44 1 1.9756 -6.9674 0.6242 45 1 2.5191 -2.0585 -1.9961 46 1 0.8028 -1.8229 -1.5684 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033508355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:57 Heat of formation + Delta-G solvation = -32.469662 kcal Electronic energy + Delta-G solvation = -26434.882341 eV Core-core repulsion = 22940.269523 eV Total energy + Delta-G solvation = -3494.612819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25391 -38.50191 -37.49788 -35.08373 -34.54932 -32.05765 -31.16696 -29.32559 -28.80074 -27.42250 -26.95605 -24.65647 -23.70540 -23.26645 -21.74960 -20.36574 -20.27397 -18.69884 -17.14847 -16.56985 -16.24016 -15.99675 -15.49039 -15.26027 -14.85410 -14.79657 -14.48877 -14.09528 -13.89147 -13.31951 -13.09852 -12.88367 -12.67752 -12.34772 -12.15828 -12.10908 -11.98891 -11.84862 -11.64552 -11.59380 -11.20503 -11.10013 -11.02472 -10.87355 -10.58404 -10.49145 -10.36908 -10.16542 -9.97729 -9.80091 -9.46152 -9.21173 -8.71931 -8.40847 -6.93304 -5.80024 -3.18873 2.67316 3.12042 3.34188 3.40016 3.41557 3.88705 4.32394 4.42644 4.49147 4.69401 4.88515 4.92778 5.11344 5.20143 5.21843 5.38798 5.43119 5.46570 5.48359 5.53028 5.57015 5.59019 5.63748 5.69300 5.73611 5.76576 5.85211 5.95917 5.98492 5.99026 6.08302 6.13252 6.17215 6.23220 6.39455 6.51549 6.54973 6.74227 7.20245 7.38305 7.49184 7.57008 7.71959 8.19426 8.26501 9.10095 9.70694 10.35083 11.27946 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028617 B = 0.004144 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.202879 B = 6755.754532 C = 6907.295961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.595 5.595 3 C 0.524 3.476 4 O -0.547 6.547 5 C -0.080 4.080 6 C -0.164 4.164 7 C -0.161 4.161 8 C 0.062 3.938 9 O -0.386 6.386 10 C 0.047 3.953 11 C -0.126 4.126 12 C 0.096 3.904 13 H 0.121 0.879 14 C -0.156 4.156 15 C 0.164 3.836 16 N -0.600 5.600 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.125 3.875 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.021 0.979 44 H 0.254 0.746 45 H 0.027 0.973 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 13.925 1.503 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.326 5.326 3 C 0.312 3.688 4 O -0.426 6.426 5 C -0.083 4.083 6 C -0.221 4.221 7 C -0.199 4.199 8 C -0.015 4.015 9 O -0.305 6.305 10 C -0.029 4.029 11 C -0.164 4.164 12 C -0.007 4.007 13 H 0.138 0.862 14 C -0.196 4.196 15 C 0.039 3.961 16 N -0.327 5.327 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.002 4.002 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.721 14.318 1.686 14.890 hybrid contribution -0.347 -1.074 -0.852 1.414 sum 3.374 13.244 0.834 13.693 Atomic orbital electron populations 1.21614 0.79413 1.03106 1.01660 1.47836 1.06936 1.05849 1.71955 1.20472 0.89516 0.83172 0.75650 1.90585 1.70333 1.31160 1.50497 1.20808 0.91921 0.97971 0.97639 1.22345 1.02660 1.01718 0.95398 1.22691 1.02435 1.00733 0.94005 1.22539 0.98970 0.82670 0.97353 1.87874 1.67588 1.25403 1.49599 1.22874 1.00111 0.94930 0.84981 1.22012 1.01257 0.93520 0.99583 1.23040 0.97395 0.82420 0.97873 0.86205 1.23502 1.01248 0.98883 0.95944 1.21679 0.98672 0.90926 0.84831 1.44391 1.79964 1.00927 1.07429 1.19037 1.35762 0.83801 0.97146 0.90493 1.24816 1.01143 0.97390 0.96765 1.69868 1.52762 1.20776 1.13273 0.86086 0.77802 0.82475 0.79320 1.21530 1.21662 1.20594 1.21622 0.98302 0.86474 0.93775 0.92972 0.91384 0.90064 0.91942 0.91250 0.89561 0.88598 0.89699 0.88582 0.93335 0.89451 0.90260 0.90687 0.90434 0.91468 0.91937 0.88728 0.96082 0.93588 0.95490 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 8.97 59.84 0.54 1.75 16 2 N -0.59 -8.89 2.88 -171.68 -0.49 -9.38 16 3 C 0.52 7.82 5.19 -10.98 -0.06 7.76 16 4 O -0.55 -9.31 13.43 5.56 0.07 -9.23 16 5 C -0.08 -1.01 0.50 -155.48 -0.08 -1.09 16 6 C -0.16 -1.94 8.10 37.16 0.30 -1.64 16 7 C -0.16 -1.91 4.58 -26.60 -0.12 -2.03 16 8 C 0.06 0.76 6.62 37.20 0.25 1.01 16 9 O -0.39 -5.23 10.77 -35.23 -0.38 -5.61 16 10 C 0.05 0.60 6.55 37.21 0.24 0.84 16 11 C -0.13 -1.47 4.57 -26.59 -0.12 -1.60 16 12 C 0.10 1.51 1.34 -65.96 -0.09 1.42 16 13 H 0.12 1.76 2.69 -51.93 -0.14 1.62 16 14 C -0.16 -2.67 6.48 -24.45 -0.16 -2.83 16 15 C 0.16 3.65 5.65 -2.53 -0.01 3.64 16 16 N -0.60 -14.25 3.39 -170.07 -0.58 -14.82 16 17 C -0.23 -6.07 10.26 -15.06 -0.15 -6.22 16 18 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 19 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 20 N -0.92 -25.57 10.27 55.49 0.57 -25.00 16 21 Si 0.91 21.24 29.56 -169.99 -5.02 16.21 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 C 0.13 2.39 6.44 -3.06 -0.02 2.37 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 28 H 0.08 1.20 6.36 -51.93 -0.33 0.87 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.09 1.15 3.27 -51.92 -0.17 0.98 16 32 H 0.10 1.18 4.26 -51.93 -0.22 0.96 16 33 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.16 5.65 -51.93 -0.29 0.86 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.07 1.16 7.23 -51.93 -0.38 0.79 16 41 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 42 H 0.09 2.40 6.33 -51.93 -0.33 2.07 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.03 0.52 7.07 -51.93 -0.37 0.15 16 46 H 0.03 0.59 6.21 -51.93 -0.32 0.27 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -29.47 333.48 -7.46 -36.94 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.07 Total: 2.71 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 0.42 Total: 3.16 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.50 Total: -49.20 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.30 Total: -14.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.47 -7.46 -36.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033508355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.467 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds