Wall clock time and date at job start Tue Mar 31 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47039 * 2 1 4 4 C 1.34780 * 119.99621 * 84.13509 * 3 2 1 5 5 O 1.21282 * 119.99544 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.00231 * 0.02562 * 4 3 2 7 7 H 1.09000 * 110.60330 * 321.31995 * 6 4 3 8 8 C 1.54101 * 110.55153 * 84.09919 * 6 4 3 9 9 N 1.47056 * 103.86086 * 118.59464 * 8 6 4 10 10 C 1.33946 * 109.18226 * 359.97438 * 9 8 6 11 11 O 1.21583 * 123.04145 * 180.02562 * 10 9 8 12 12 N 1.33949 * 113.91193 * 0.02562 * 10 9 8 13 13 C 1.46493 * 120.00183 * 264.13644 * 3 2 1 14 14 H 1.09002 * 110.88677 * 176.54006 * 13 3 2 15 15 C 1.55153 * 111.00526 * 300.42442 * 13 3 2 16 16 C 1.54326 * 102.94419 * 153.57323 * 15 13 3 17 17 N 1.47019 * 107.27032 * 337.80860 * 16 15 13 18 18 C 1.36944 * 125.64820 * 178.99222 * 17 16 15 19 19 H 1.08001 * 119.99460 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99806 * 359.97438 * 18 17 16 21 21 N 1.31616 * 120.00252 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99722 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46922 * 60.00363 * 22 20 18 24 24 H 1.48501 * 109.47241 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47308 * 300.00193 * 22 20 18 26 26 C 1.47466 * 108.72399 * 358.97410 * 17 16 15 27 27 H 1.08999 * 109.47231 * 305.81858 * 1 2 3 28 28 H 1.09005 * 109.46952 * 65.81905 * 1 2 3 29 29 H 1.09000 * 109.47018 * 185.81513 * 1 2 3 30 30 H 1.09002 * 109.47246 * 240.00061 * 2 1 3 31 31 H 1.09003 * 109.47373 * 120.00057 * 2 1 3 32 32 H 1.09009 * 110.55036 * 0.02562 * 8 6 4 33 33 H 1.08997 * 110.67412 * 237.24631 * 8 6 4 34 34 H 0.97001 * 125.40493 * 180.02562 * 9 8 6 35 35 H 0.96998 * 125.40752 * 179.73340 * 12 10 9 36 36 H 1.09000 * 110.72079 * 271.93512 * 15 13 3 37 37 H 1.09005 * 110.72216 * 35.21602 * 15 13 3 38 38 H 1.09004 * 109.87859 * 97.22296 * 16 15 13 39 39 H 1.09001 * 109.88341 * 218.23445 * 16 15 13 40 40 H 0.97000 * 119.99982 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.34672 * 265.25503 * 26 17 16 42 42 H 1.08997 * 110.41050 * 142.91897 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1305 2.0563 1.1612 5 8 2.5352 3.1996 1.1612 6 6 1.7541 1.3901 2.4595 7 1 0.8688 0.7678 2.3288 8 6 2.9297 0.5519 2.9981 9 7 3.2413 1.1738 4.2937 10 6 2.4070 2.2010 4.5009 11 8 2.4439 2.8941 5.4991 12 7 1.5284 2.3955 3.5086 13 6 2.3847 2.0287 -1.2620 14 1 2.6687 3.0681 -1.0974 15 6 3.5188 1.2490 -1.9784 16 6 3.2975 1.6040 -3.4638 17 7 1.8962 2.0247 -3.6080 18 6 1.3033 2.4407 -4.7703 19 1 0.2627 2.7298 -4.7721 20 6 2.0397 2.4906 -5.9458 21 7 3.3077 2.1377 -5.9436 22 14 1.2308 3.0573 -7.5313 23 1 0.7296 4.4451 -7.3627 24 1 2.2243 3.0211 -8.6344 25 1 0.0956 2.1572 -7.8571 26 6 1.2342 1.9242 -2.2941 27 1 -0.3634 0.6014 0.8333 28 1 -0.3633 0.4210 -0.9375 29 1 -0.3633 -1.0224 0.1041 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7860 0.6179 2.3267 33 1 2.6307 -0.4873 3.1346 34 1 3.9405 0.8862 4.9015 35 1 0.8487 3.0871 3.4873 36 1 4.4963 1.5934 -1.6410 37 1 3.4102 0.1762 -1.8181 38 1 3.9609 2.4193 -3.7528 39 1 3.4907 0.7305 -4.0866 40 1 3.8222 2.1723 -6.7651 41 1 0.7249 0.9653 -2.1987 42 1 0.5288 2.7443 -2.1602 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033939710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:19 Heat of formation + Delta-G solvation = -10.248934 kcal Electronic energy + Delta-G solvation = -24945.926976 eV Core-core repulsion = 21348.737377 eV Total energy + Delta-G solvation = -3597.189599 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59766 -39.74787 -37.54454 -36.34113 -35.44269 -33.27340 -32.41287 -30.60609 -29.79306 -28.96528 -27.25737 -24.84533 -24.09657 -23.24718 -22.01200 -20.83937 -20.18853 -19.06183 -18.19924 -17.65649 -17.00835 -16.57524 -16.31858 -15.74331 -15.00019 -14.85266 -14.62382 -14.27850 -14.09786 -14.00105 -13.73122 -13.48019 -13.11853 -12.97335 -12.57394 -12.40061 -12.27666 -12.01023 -11.68731 -11.19956 -10.98363 -10.92418 -10.82394 -10.52850 -10.38804 -10.21845 -10.13086 -9.87249 -9.76267 -9.61938 -9.06516 -8.68332 -8.53874 -6.90495 -5.76792 -3.11309 2.27207 2.56898 2.77122 3.06762 3.37762 3.42398 3.43354 3.71060 3.95693 4.15770 4.45932 4.48825 4.75363 4.88557 5.02095 5.05383 5.20891 5.28387 5.35489 5.38036 5.53685 5.57826 5.66120 5.67958 5.73147 6.00880 6.16057 6.22131 6.40429 6.49930 6.60241 6.72903 6.82409 6.90543 7.11021 7.38775 7.48697 7.53182 7.75861 8.06320 8.19265 8.39869 9.15447 9.75472 10.39642 11.34589 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.033939 B = 0.003374 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.818888 B = 8296.040165 C = 8367.974988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.097 3.903 3 N -0.591 5.591 4 C 0.501 3.499 5 O -0.523 6.523 6 C 0.101 3.899 7 H 0.117 0.883 8 C 0.105 3.895 9 N -0.739 5.739 10 C 0.707 3.293 11 O -0.586 6.586 12 N -0.714 5.714 13 C 0.122 3.878 14 H 0.106 0.894 15 C -0.152 4.152 16 C 0.179 3.821 17 N -0.603 5.603 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.129 3.871 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.432 0.568 35 H 0.434 0.566 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.254 0.746 41 H 0.029 0.971 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -9.727 15.967 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.026 4.026 3 N -0.324 5.324 4 C 0.286 3.714 5 O -0.398 6.398 6 C -0.010 4.010 7 H 0.135 0.865 8 C -0.021 4.021 9 N -0.402 5.402 10 C 0.406 3.594 11 O -0.464 6.464 12 N -0.376 5.376 13 C 0.018 3.982 14 H 0.124 0.876 15 C -0.191 4.191 16 C 0.054 3.946 17 N -0.330 5.330 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.002 3.998 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.274 0.726 35 H 0.277 0.723 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.332 -8.721 16.220 18.563 hybrid contribution -0.392 0.290 -0.938 1.057 sum -2.725 -8.431 15.282 17.665 Atomic orbital electron populations 1.22436 0.95524 1.02360 1.03479 1.21639 0.94797 0.82582 1.03532 1.47991 1.63990 1.13938 1.06448 1.20645 0.78873 0.86882 0.85039 1.90758 1.45047 1.17474 1.86476 1.21999 1.00295 0.90631 0.88041 0.86526 1.22252 0.96936 0.97194 0.85753 1.45037 1.38487 1.34271 1.22433 1.15845 0.79536 0.80955 0.83101 1.90998 1.74351 1.51072 1.29981 1.44835 1.37934 1.36080 1.18776 1.22518 0.96581 0.97959 0.81117 0.87620 1.23254 0.97449 0.99122 0.99316 1.21142 0.86080 0.99337 0.88020 1.44383 1.07441 1.77905 1.03222 1.18996 0.94608 1.37618 0.84737 0.90439 1.24803 0.96021 1.01475 0.97914 1.69937 1.06842 1.53426 1.26649 0.86184 0.78038 0.78580 0.82852 1.21111 1.21561 1.21132 1.21885 0.93417 0.98543 0.85939 0.92713 0.90703 0.91327 0.88822 0.90967 0.89390 0.88637 0.72601 0.72349 0.91891 0.92033 0.93355 0.93601 0.93611 0.95373 0.94224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.68 37.16 0.36 -1.09 16 2 C 0.10 0.85 4.82 -4.04 -0.02 0.83 16 3 N -0.59 -7.36 2.53 -163.67 -0.41 -7.77 16 4 C 0.50 6.47 6.73 -10.98 -0.07 6.40 16 5 O -0.52 -9.26 15.98 5.56 0.09 -9.17 16 6 C 0.10 0.90 3.19 -68.21 -0.22 0.68 16 7 H 0.12 0.71 5.70 -51.93 -0.30 0.41 16 8 C 0.10 0.71 6.78 -3.16 -0.02 0.69 16 9 N -0.74 -6.62 6.37 -64.70 -0.41 -7.04 16 10 C 0.71 9.13 8.92 -88.40 -0.79 8.34 16 11 O -0.59 -10.02 18.05 5.29 0.10 -9.92 16 12 N -0.71 -7.89 5.63 -59.33 -0.33 -8.22 16 13 C 0.12 2.05 3.44 -65.79 -0.23 1.83 16 14 H 0.11 2.07 7.02 -51.93 -0.36 1.71 16 15 C -0.15 -2.62 6.50 -24.90 -0.16 -2.78 16 16 C 0.18 4.13 5.37 -3.06 -0.02 4.12 16 17 N -0.60 -14.72 3.40 -170.03 -0.58 -15.30 16 18 C -0.23 -6.27 10.28 -15.06 -0.15 -6.42 16 19 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -26.38 10.31 55.49 0.57 -25.81 16 22 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.13 2.49 6.48 -2.50 -0.02 2.47 16 27 H 0.05 0.40 6.74 -51.93 -0.35 0.05 16 28 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.91 6.35 -51.93 -0.33 0.58 16 31 H 0.07 0.38 6.25 -51.93 -0.32 0.06 16 32 H 0.09 0.63 7.72 -51.92 -0.40 0.22 16 33 H 0.10 0.32 8.13 -51.93 -0.42 -0.10 16 34 H 0.43 2.97 8.96 -40.82 -0.37 2.61 16 35 H 0.43 4.53 8.96 -40.82 -0.37 4.17 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.92 6.44 -51.93 -0.33 0.59 16 38 H 0.05 1.26 7.38 -51.93 -0.38 0.88 16 39 H 0.05 1.16 7.50 -51.93 -0.39 0.77 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.03 0.50 5.05 -51.93 -0.26 0.24 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 329.51 15.07 4.97 4.97 Total: -1.00 -35.68 329.51 -8.18 -43.86 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.71 Total: 2.96 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: -1.43 Total: 14.79 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -1.16 Total: -64.13 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.18 Total: -19.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.68 -8.18 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033939710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.616 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds