Wall clock time and date at job start Tue Mar 31 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47039 * 2 1 4 4 C 1.34780 * 119.99621 * 84.13509 * 3 2 1 5 5 O 1.21282 * 119.99544 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.00231 * 0.02562 * 4 3 2 7 7 H 1.09000 * 110.60330 * 321.31995 * 6 4 3 8 8 C 1.54101 * 110.55153 * 84.09919 * 6 4 3 9 9 N 1.47056 * 103.86086 * 118.59464 * 8 6 4 10 10 C 1.33946 * 109.18226 * 359.97438 * 9 8 6 11 11 O 1.21583 * 123.04145 * 180.02562 * 10 9 8 12 12 N 1.33949 * 113.91193 * 0.02562 * 10 9 8 13 13 C 1.46493 * 120.00183 * 264.13644 * 3 2 1 14 14 H 1.09002 * 110.88677 * 176.54006 * 13 3 2 15 15 C 1.55153 * 111.00526 * 300.42442 * 13 3 2 16 16 C 1.54326 * 102.94419 * 153.57323 * 15 13 3 17 17 N 1.47019 * 107.27032 * 337.80860 * 16 15 13 18 18 C 1.36944 * 125.64820 * 178.99222 * 17 16 15 19 19 H 1.08001 * 119.99460 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99806 * 359.97438 * 18 17 16 21 21 N 1.31616 * 120.00252 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99722 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46922 * 60.00363 * 22 20 18 24 24 H 1.48501 * 109.47241 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47308 * 300.00193 * 22 20 18 26 26 C 1.47466 * 108.72399 * 358.97410 * 17 16 15 27 27 H 1.08999 * 109.47231 * 305.81858 * 1 2 3 28 28 H 1.09005 * 109.46952 * 65.81905 * 1 2 3 29 29 H 1.09000 * 109.47018 * 185.81513 * 1 2 3 30 30 H 1.09002 * 109.47246 * 240.00061 * 2 1 3 31 31 H 1.09003 * 109.47373 * 120.00057 * 2 1 3 32 32 H 1.09009 * 110.55036 * 0.02562 * 8 6 4 33 33 H 1.08997 * 110.67412 * 237.24631 * 8 6 4 34 34 H 0.97001 * 125.40493 * 180.02562 * 9 8 6 35 35 H 0.96998 * 125.40752 * 179.73340 * 12 10 9 36 36 H 1.09000 * 110.72079 * 271.93512 * 15 13 3 37 37 H 1.09005 * 110.72216 * 35.21602 * 15 13 3 38 38 H 1.09004 * 109.87859 * 97.22296 * 16 15 13 39 39 H 1.09001 * 109.88341 * 218.23445 * 16 15 13 40 40 H 0.97000 * 119.99982 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.34672 * 265.25503 * 26 17 16 42 42 H 1.08997 * 110.41050 * 142.91897 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1305 2.0563 1.1612 5 8 2.5352 3.1996 1.1612 6 6 1.7541 1.3901 2.4595 7 1 0.8688 0.7678 2.3288 8 6 2.9297 0.5519 2.9981 9 7 3.2413 1.1738 4.2937 10 6 2.4070 2.2010 4.5009 11 8 2.4439 2.8941 5.4991 12 7 1.5284 2.3955 3.5086 13 6 2.3847 2.0287 -1.2620 14 1 2.6687 3.0681 -1.0974 15 6 3.5188 1.2490 -1.9784 16 6 3.2975 1.6040 -3.4638 17 7 1.8962 2.0247 -3.6080 18 6 1.3033 2.4407 -4.7703 19 1 0.2627 2.7298 -4.7721 20 6 2.0397 2.4906 -5.9458 21 7 3.3077 2.1377 -5.9436 22 14 1.2308 3.0573 -7.5313 23 1 0.7296 4.4451 -7.3627 24 1 2.2243 3.0211 -8.6344 25 1 0.0956 2.1572 -7.8571 26 6 1.2342 1.9242 -2.2941 27 1 -0.3634 0.6014 0.8333 28 1 -0.3633 0.4210 -0.9375 29 1 -0.3633 -1.0224 0.1041 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7860 0.6179 2.3267 33 1 2.6307 -0.4873 3.1346 34 1 3.9405 0.8862 4.9015 35 1 0.8487 3.0871 3.4873 36 1 4.4963 1.5934 -1.6410 37 1 3.4102 0.1762 -1.8181 38 1 3.9609 2.4193 -3.7528 39 1 3.4907 0.7305 -4.0866 40 1 3.8222 2.1723 -6.7651 41 1 0.7249 0.9653 -2.1987 42 1 0.5288 2.7443 -2.1602 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033939710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:18 Heat of formation + Delta-G solvation = -39.934758 kcal Electronic energy + Delta-G solvation = -24947.214250 eV Core-core repulsion = 21348.737377 eV Total energy + Delta-G solvation = -3598.476873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.46575 -40.85057 -38.98611 -37.35299 -36.71630 -34.28422 -33.98034 -31.78227 -30.87368 -30.37047 -28.73374 -26.47482 -25.11543 -24.05862 -22.84537 -22.09772 -21.97266 -20.19293 -19.05820 -18.86208 -18.62694 -17.57304 -17.27834 -16.69857 -16.63851 -16.06254 -15.89230 -15.64743 -15.15057 -15.00399 -14.66284 -14.58448 -14.17759 -14.06292 -13.95333 -13.72423 -13.57803 -13.17041 -12.92692 -12.78756 -12.57490 -12.27778 -12.10209 -12.08442 -11.84084 -11.74904 -11.59090 -11.41398 -11.25425 -10.70239 -10.54460 -9.83383 -9.69888 -8.89695 -7.85478 -5.21619 1.33343 1.46434 1.49478 1.55448 1.63679 1.91693 2.11328 2.50382 3.01492 3.27267 3.32046 3.33706 3.68790 3.90300 3.93437 3.98689 4.12729 4.21491 4.33710 4.46097 4.56169 4.57010 4.64917 4.67641 4.72079 4.86715 4.89829 5.03563 5.10075 5.21047 5.43175 5.53021 5.60804 5.64650 5.74538 5.89469 6.18544 6.20381 6.26770 6.42666 7.05873 7.09545 7.51458 7.75909 8.38835 9.24174 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.033939 B = 0.003374 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.818888 B = 8296.040165 C = 8367.974988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 N -0.584 5.584 4 C 0.500 3.500 5 O -0.579 6.579 6 C 0.108 3.892 7 H 0.159 0.841 8 C 0.103 3.897 9 N -0.727 5.727 10 C 0.696 3.304 11 O -0.639 6.639 12 N -0.716 5.716 13 C 0.138 3.862 14 H 0.072 0.928 15 C -0.132 4.132 16 C 0.187 3.813 17 N -0.626 5.626 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.978 3.022 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.131 3.869 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.441 0.559 35 H 0.433 0.567 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.004 0.996 39 H 0.018 0.982 40 H 0.247 0.753 41 H 0.056 0.944 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -12.546 17.386 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.033 4.033 3 N -0.315 5.315 4 C 0.287 3.713 5 O -0.458 6.458 6 C -0.001 4.001 7 H 0.176 0.824 8 C -0.022 4.022 9 N -0.391 5.391 10 C 0.394 3.606 11 O -0.521 6.521 12 N -0.377 5.377 13 C 0.033 3.967 14 H 0.090 0.910 15 C -0.171 4.171 16 C 0.061 3.939 17 N -0.353 5.353 18 C -0.374 4.374 19 H 0.099 0.901 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.806 3.194 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.005 3.995 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.168 0.832 34 H 0.285 0.715 35 H 0.275 0.725 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.023 0.977 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.481 -11.616 17.650 21.414 hybrid contribution -0.078 1.164 -1.377 1.805 sum -3.560 -10.452 16.272 19.665 Atomic orbital electron populations 1.22420 0.94833 1.04167 1.02237 1.22062 0.95373 0.80138 1.05747 1.47962 1.63641 1.15352 1.04567 1.21448 0.77439 0.86209 0.86228 1.90749 1.47514 1.20202 1.87314 1.22261 1.02886 0.90091 0.84893 0.82383 1.22636 0.96178 0.99085 0.84282 1.45022 1.37655 1.33093 1.23283 1.16160 0.80188 0.81402 0.82807 1.90952 1.75831 1.53108 1.32185 1.44911 1.37383 1.36544 1.18819 1.21916 0.95201 0.96781 0.82822 0.91008 1.23049 0.97997 1.01153 0.94867 1.20878 0.84962 0.96462 0.91558 1.44671 1.08325 1.77841 1.04439 1.19392 0.95009 1.36969 0.86028 0.90067 1.25625 0.96662 1.02258 1.01051 1.70159 1.08059 1.54764 1.26814 0.85172 0.77185 0.78241 0.78843 1.20741 1.22054 1.19889 1.22029 0.93867 0.99180 0.84407 0.91635 0.93831 0.88416 0.89380 0.86005 0.89157 0.83201 0.71486 0.72482 0.91060 0.88680 0.97742 0.96416 0.94348 0.92670 0.95449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.68 71.98 0.70 -1.37 16 2 C 0.09 1.09 4.82 86.38 0.42 1.51 16 3 N -0.58 -12.92 2.53 -790.12 -2.00 -14.92 16 4 C 0.50 11.74 6.73 87.66 0.59 12.33 16 5 O -0.58 -20.43 15.98 -3.03 -0.05 -20.48 16 6 C 0.11 1.48 3.19 44.51 0.14 1.62 16 7 H 0.16 0.92 5.70 -2.39 -0.01 0.91 16 8 C 0.10 0.86 6.78 86.65 0.59 1.45 16 9 N -0.73 -10.75 6.37 -477.34 -3.04 -13.80 16 10 C 0.70 16.91 8.92 179.57 1.60 18.51 16 11 O -0.64 -21.84 18.05 -3.98 -0.07 -21.91 16 12 N -0.72 -14.39 5.63 -460.36 -2.59 -16.99 16 13 C 0.14 4.58 3.44 46.38 0.16 4.74 16 14 H 0.07 2.91 7.02 -2.39 -0.02 2.89 16 15 C -0.13 -4.42 6.50 31.78 0.21 -4.22 16 16 C 0.19 8.90 5.37 86.73 0.47 9.37 16 17 N -0.63 -31.27 3.40 -691.87 -2.35 -33.62 16 18 C -0.25 -13.55 10.28 84.03 0.86 -12.69 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 21 N -0.95 -56.36 10.31 21.65 0.22 -56.14 16 22 Si 0.98 45.25 29.55 68.60 2.03 47.28 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 C 0.13 5.02 6.48 86.85 0.56 5.58 16 27 H 0.06 0.63 6.74 -2.39 -0.02 0.62 16 28 H 0.04 0.80 5.93 -2.38 -0.01 0.78 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 1.29 6.35 -2.39 -0.02 1.27 16 31 H 0.12 0.38 6.25 -2.39 -0.01 0.37 16 32 H 0.09 0.82 7.72 -2.38 -0.02 0.81 16 33 H 0.15 -0.20 8.13 -2.39 -0.02 -0.22 16 34 H 0.44 4.82 8.96 -92.71 -0.83 3.99 16 35 H 0.43 8.64 8.96 -92.71 -0.83 7.81 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.09 2.57 6.44 -2.38 -0.02 2.56 16 38 H 0.00 0.24 7.38 -2.38 -0.02 0.22 16 39 H 0.02 0.93 7.50 -2.39 -0.02 0.91 16 40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.06 1.87 5.05 -2.39 -0.01 1.85 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -84.93 329.51 -1.68 -86.61 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.58 Total: 10.19 kcal Atomic # 6 Polarization: 27.01 SS G_CDS: 6.76 Total: 33.77 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -9.76 Total: -135.46 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.12 Total: -42.39 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -84.93 -1.68 -86.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033939710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.676 kcal (2) G-P(sol) polarization free energy of solvation -84.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds