Wall clock time and date at job start Tue Mar 31 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46963 * 2 1 4 4 C 1.34770 * 119.99936 * 90.00273 * 3 2 1 5 5 O 1.21280 * 120.00184 * 179.97438 * 4 3 2 6 6 C 1.50703 * 120.00274 * 359.97438 * 4 3 2 7 7 H 1.08998 * 110.48743 * 42.70009 * 6 4 3 8 8 C 1.54106 * 110.54917 * 280.00262 * 6 4 3 9 9 N 1.47050 * 103.86171 * 241.25939 * 8 6 4 10 10 C 1.33950 * 109.18047 * 359.97438 * 9 8 6 11 11 O 1.21586 * 123.03984 * 180.02562 * 10 9 8 12 12 N 1.33941 * 113.91519 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99985 * 269.99825 * 3 2 1 14 14 H 1.09000 * 110.63843 * 178.31348 * 13 3 2 15 15 C 1.55155 * 110.72067 * 54.97985 * 13 3 2 16 16 C 1.54912 * 101.58137 * 277.14110 * 15 13 3 17 17 N 1.47430 * 104.82896 * 322.98538 * 16 15 13 18 18 C 1.36938 * 125.64768 * 204.09183 * 17 16 15 19 19 H 1.07995 * 119.99794 * 180.02562 * 18 17 16 20 20 C 1.38815 * 119.99797 * 0.04831 * 18 17 16 21 21 N 1.31611 * 120.00486 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99612 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47627 * 59.99589 * 22 20 18 24 24 H 1.48501 * 109.47319 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46897 * 299.99764 * 22 20 18 26 26 C 1.47017 * 108.70136 * 24.13319 * 17 16 15 27 27 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46758 * 300.00045 * 1 2 3 29 29 H 1.09004 * 109.47338 * 59.99999 * 1 2 3 30 30 H 1.09001 * 109.46758 * 239.99955 * 2 1 3 31 31 H 1.09002 * 109.46823 * 119.99927 * 2 1 3 32 32 H 1.09003 * 110.54643 * 359.85387 * 8 6 4 33 33 H 1.08999 * 110.55024 * 122.66084 * 8 6 4 34 34 H 0.97005 * 125.41013 * 180.02562 * 9 8 6 35 35 H 0.97002 * 125.41292 * 179.97438 * 12 10 9 36 36 H 1.09004 * 111.00256 * 35.20832 * 15 13 3 37 37 H 1.08996 * 111.00615 * 159.06265 * 15 13 3 38 38 H 1.09002 * 110.36856 * 204.15427 * 16 15 13 39 39 H 1.08994 * 110.37084 * 81.83023 * 16 15 13 40 40 H 0.96999 * 120.00703 * 180.02562 * 21 20 18 41 41 H 1.09005 * 109.88412 * 239.51859 * 26 17 16 42 42 H 1.09007 * 109.88337 * 118.35248 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6477 3.1599 1.1672 6 6 1.9914 1.3063 2.4723 7 1 2.3636 0.2829 2.4277 8 6 0.4890 1.3210 2.8152 9 7 0.4252 2.0554 4.0876 10 6 1.6630 2.4183 4.4488 11 8 1.9011 3.0404 5.4660 12 7 2.6146 2.0328 3.5887 13 6 2.2625 2.0719 -1.2687 14 1 2.5926 3.0955 -1.0916 15 6 0.9932 2.0468 -2.1606 16 6 1.1055 0.6506 -2.8222 17 7 2.5478 0.4617 -3.0621 18 6 3.0985 -0.3624 -4.0070 19 1 4.1719 -0.4315 -4.1037 20 6 2.2769 -1.1087 -4.8408 21 7 0.9688 -1.0246 -4.7229 22 14 3.0282 -2.2334 -6.1292 23 1 3.8811 -3.2499 -5.4625 24 1 1.9455 -2.9143 -6.8838 25 1 3.8553 -1.4305 -7.0655 26 6 3.2970 1.3038 -2.1182 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 -0.0746 1.8442 2.0427 33 1 0.1153 0.3048 2.9408 34 1 -0.3846 2.2461 4.5865 35 1 3.5640 2.2065 3.6859 36 1 0.0893 2.1209 -1.5558 37 1 1.0262 2.8379 -2.9096 38 1 0.5587 0.6324 -3.7650 39 1 0.7287 -0.1196 -2.1493 40 1 0.3947 -1.5462 -5.3052 41 1 3.9231 2.0081 -2.6661 42 1 3.9151 0.6787 -1.4737 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033939711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:20 Heat of formation + Delta-G solvation = -24.223812 kcal Electronic energy + Delta-G solvation = -25478.007218 eV Core-core repulsion = 21880.211623 eV Total energy + Delta-G solvation = -3597.795595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.50611 -40.98605 -39.06133 -37.37425 -36.32204 -34.17381 -33.98669 -31.89286 -31.22067 -30.10638 -28.53668 -26.52924 -24.92367 -24.21915 -22.84190 -22.11969 -21.94100 -19.97363 -19.05654 -18.91147 -18.71452 -17.52077 -17.34439 -16.67375 -16.43115 -16.21212 -15.98376 -15.60864 -15.24978 -15.01273 -14.77087 -14.27133 -14.21957 -13.99906 -13.70660 -13.45536 -13.34744 -13.14725 -12.90726 -12.87788 -12.65774 -12.15665 -12.03640 -11.96125 -11.74369 -11.69031 -11.47078 -11.36817 -11.18899 -10.63434 -10.50065 -9.82973 -9.68038 -8.80260 -7.71748 -5.14390 1.37960 1.51513 1.52583 1.58708 1.63558 1.92507 2.12542 2.53465 2.98499 3.26586 3.31927 3.38490 3.75566 3.86860 3.91422 4.04681 4.17654 4.28759 4.34663 4.50081 4.57145 4.62612 4.69881 4.73218 4.76351 4.89140 4.98732 5.04178 5.09488 5.27717 5.52932 5.54428 5.62726 5.78933 5.90014 5.90593 6.21055 6.26913 6.39101 6.45022 7.05403 7.18233 7.51818 7.83834 8.46840 9.28480 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.034327 B = 0.003784 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.484796 B = 7397.163382 C = 7593.736266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 N -0.579 5.579 4 C 0.502 3.498 5 O -0.575 6.575 6 C 0.106 3.894 7 H 0.153 0.847 8 C 0.102 3.898 9 N -0.727 5.727 10 C 0.697 3.303 11 O -0.637 6.637 12 N -0.714 5.714 13 C 0.138 3.862 14 H 0.095 0.905 15 C -0.143 4.143 16 C 0.145 3.855 17 N -0.619 5.619 18 C -0.238 4.238 19 H 0.073 0.927 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.294 1.294 25 H -0.285 1.285 26 C 0.128 3.872 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.142 0.858 34 H 0.442 0.558 35 H 0.434 0.566 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.247 0.753 41 H 0.024 0.976 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 -0.638 13.360 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.034 4.034 3 N -0.310 5.310 4 C 0.289 3.711 5 O -0.454 6.454 6 C -0.003 4.003 7 H 0.170 0.830 8 C -0.022 4.022 9 N -0.390 5.390 10 C 0.395 3.605 11 O -0.519 6.519 12 N -0.374 5.374 13 C 0.034 3.966 14 H 0.113 0.887 15 C -0.182 4.182 16 C 0.021 3.979 17 N -0.345 5.345 18 C -0.367 4.367 19 H 0.091 0.909 20 C -0.248 4.248 21 N -0.589 5.589 22 Si 0.800 3.200 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.212 1.212 26 C 0.002 3.998 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.160 0.840 34 H 0.285 0.715 35 H 0.276 0.724 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.044 0.093 13.677 14.263 hybrid contribution 0.707 -0.260 -1.147 1.372 sum -3.337 -0.167 12.530 12.968 Atomic orbital electron populations 1.22583 0.94196 1.03808 1.03231 1.22035 0.96046 0.80725 1.04600 1.47953 1.63762 1.14913 1.04370 1.21257 0.77301 0.86457 0.86062 1.90713 1.47585 1.19540 1.87593 1.22131 0.95891 0.98213 0.84075 0.82961 1.22771 0.92281 1.01062 0.86088 1.45047 1.07437 1.60575 1.25915 1.16133 0.82774 0.78859 0.82693 1.90951 1.83995 1.48011 1.28978 1.44891 1.09719 1.60581 1.22247 1.21831 0.95866 0.96022 0.82924 0.88675 1.23278 0.97152 0.99508 0.98261 1.22112 0.84702 0.91658 0.99399 1.44713 1.02743 1.49194 1.37879 1.19291 0.91644 1.16578 1.09236 0.90894 1.25408 0.95972 1.01830 1.01541 1.69997 1.02451 1.44836 1.41591 0.85277 0.76836 0.78761 0.79134 1.20557 1.21988 1.21181 1.21677 0.93985 0.92928 0.91196 0.90147 0.89900 0.92744 0.90846 0.87318 0.88828 0.84002 0.71460 0.72383 0.89244 0.91793 0.91786 0.94213 0.94338 0.95855 0.95428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 8.98 71.98 0.65 -2.59 16 2 C 0.09 1.90 4.94 86.38 0.43 2.32 16 3 N -0.58 -14.75 2.45 -791.24 -1.94 -16.69 16 4 C 0.50 12.46 6.80 87.66 0.60 13.06 16 5 O -0.58 -19.44 15.94 -3.03 -0.05 -19.49 16 6 C 0.11 1.73 3.30 44.51 0.15 1.88 16 7 H 0.15 1.47 6.51 -2.39 -0.02 1.45 16 8 C 0.10 1.16 5.85 86.65 0.51 1.67 16 9 N -0.73 -11.77 6.37 -477.34 -3.04 -14.81 16 10 C 0.70 17.53 8.92 179.57 1.60 19.13 16 11 O -0.64 -22.02 18.05 -3.99 -0.07 -22.10 16 12 N -0.71 -15.19 5.62 -460.34 -2.59 -17.77 16 13 C 0.14 4.48 3.58 46.18 0.17 4.64 16 14 H 0.10 3.23 6.99 -2.39 -0.02 3.21 16 15 C -0.14 -4.79 6.09 31.99 0.19 -4.60 16 16 C 0.15 6.13 4.65 86.86 0.40 6.54 16 17 N -0.62 -28.73 2.97 -691.97 -2.05 -30.79 16 18 C -0.24 -12.45 10.27 84.03 0.86 -11.58 16 19 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 20 C -0.05 -2.84 5.49 84.86 0.47 -2.38 16 21 N -0.94 -51.12 10.09 21.65 0.22 -50.90 16 22 Si 0.97 43.07 29.55 68.60 2.03 45.10 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 26 C 0.13 4.99 6.24 86.73 0.54 5.53 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 0.94 4.43 -2.39 -0.01 0.93 16 29 H 0.05 1.29 4.33 -2.39 -0.01 1.28 16 30 H 0.07 2.29 5.19 -2.39 -0.01 2.28 16 31 H 0.11 1.46 6.02 -2.39 -0.01 1.44 16 32 H 0.09 1.11 6.42 -2.39 -0.02 1.09 16 33 H 0.14 0.49 7.91 -2.39 -0.02 0.47 16 34 H 0.44 5.34 8.96 -92.70 -0.83 4.51 16 35 H 0.43 9.01 8.96 -92.71 -0.83 8.18 16 36 H 0.09 2.56 6.46 -2.38 -0.02 2.55 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 3.26 5.87 -2.39 -0.01 3.25 16 39 H 0.04 1.62 4.02 -2.39 -0.01 1.61 16 40 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 41 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.03 1.07 8.04 -2.38 -0.02 1.05 16 Total: -1.00 -74.02 318.16 -1.50 -75.52 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.57 Total: 18.30 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 6.56 Total: 33.63 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -9.40 Total: -130.96 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.12 Total: -41.59 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.02 -1.50 -75.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033939711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.295 kcal (2) G-P(sol) polarization free energy of solvation -74.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds