Wall clock time and date at job start Tue Mar 31 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.99748 * 2 1 4 4 C 1.54323 * 109.88055 * 121.08690 * 2 1 3 5 5 H 1.09001 * 110.72683 * 215.76778 * 4 2 1 6 6 N 1.46506 * 110.72334 * 338.86666 * 4 2 1 7 7 C 1.36931 * 119.99939 * 202.55648 * 6 4 2 8 8 H 1.08000 * 120.00644 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99715 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99673 * 179.72262 * 9 7 6 11 11 Si 1.86795 * 120.00115 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47274 * 89.99913 * 11 9 7 13 13 H 1.48505 * 109.47015 * 209.99478 * 11 9 7 14 14 H 1.48498 * 109.47362 * 329.99904 * 11 9 7 15 15 C 1.55160 * 103.09835 * 97.31499 * 4 2 1 16 16 C 1.55116 * 101.48737 * 35.28536 * 15 4 2 17 17 N 1.47016 * 109.88470 * 238.90062 * 2 1 3 18 18 C 1.34775 * 125.65139 * 59.48778 * 17 2 1 19 19 O 1.21277 * 119.99610 * 0.02562 * 18 17 2 20 20 C 1.50701 * 120.00208 * 180.02562 * 18 17 2 21 21 H 1.08996 * 110.48689 * 38.74858 * 20 18 17 22 22 C 1.54098 * 110.54638 * 275.89777 * 20 18 17 23 23 N 1.47060 * 103.86211 * 241.40610 * 22 20 18 24 24 C 1.46494 * 125.41227 * 180.02562 * 23 22 20 25 25 C 1.33948 * 109.17662 * 359.97438 * 23 22 20 26 26 O 1.21582 * 123.04084 * 179.97438 * 25 23 22 27 27 N 1.33945 * 113.91544 * 0.02562 * 25 23 22 28 28 H 1.09005 * 109.47326 * 298.90883 * 1 2 3 29 29 H 1.08999 * 109.46594 * 58.90735 * 1 2 3 30 30 H 1.08996 * 109.47323 * 178.91111 * 1 2 3 31 31 H 0.97000 * 119.99307 * 22.55442 * 6 4 2 32 32 H 0.97000 * 120.00043 * 180.02562 * 10 9 7 33 33 H 1.09007 * 111.00432 * 153.49084 * 15 4 2 34 34 H 1.09000 * 111.00219 * 277.33606 * 15 4 2 35 35 H 1.09000 * 110.42436 * 204.29582 * 16 15 4 36 36 H 1.09000 * 110.30169 * 82.08543 * 16 15 4 37 37 H 1.09000 * 110.55444 * 359.97438 * 22 20 18 38 38 H 1.09003 * 110.55373 * 122.81208 * 22 20 18 39 39 H 1.08997 * 109.47313 * 180.02562 * 24 23 22 40 40 H 1.08995 * 109.47157 * 300.02258 * 24 23 22 41 41 H 1.09003 * 109.47115 * 60.02209 * 24 23 22 42 42 H 0.97006 * 125.40896 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7493 1.2428 5 1 2.9639 -0.2811 1.6203 6 7 1.0291 -0.8024 2.2876 7 6 1.3923 -0.9886 3.5947 8 1 2.4348 -1.0967 3.8555 9 6 0.4205 -1.0383 4.5847 10 7 0.7692 -1.2227 5.8404 11 14 -1.3826 -0.8520 4.1338 12 1 -1.9615 -2.1888 3.8454 13 1 -2.1143 -0.2296 5.2663 14 1 -1.5055 0.0105 2.9312 15 6 2.3553 -2.1700 0.6960 16 6 2.8569 -1.8499 -0.7365 17 7 2.0300 -0.7141 -1.1838 18 6 1.7743 -0.3855 -2.4656 19 8 1.0771 0.5742 -2.7180 20 6 2.3548 -1.2104 -3.5852 21 1 2.3354 -2.2695 -3.3284 22 6 3.7917 -0.7544 -3.9043 23 7 3.7164 -0.3047 -5.3024 24 6 4.8349 0.2283 -6.0841 25 6 2.4629 -0.4608 -5.7479 26 8 2.1189 -0.1664 -6.8763 27 7 1.6225 -0.9697 -4.8375 28 1 -0.3634 0.4968 0.8996 29 1 -0.3632 0.5307 -0.8800 30 1 -0.3634 -1.0274 -0.0195 31 1 0.0929 -0.7056 2.0534 32 1 0.0901 -1.2579 6.5322 33 1 3.1316 -2.6591 1.2846 34 1 1.4501 -2.7764 0.6654 35 1 2.7089 -2.7081 -1.3919 36 1 3.9094 -1.5673 -0.7144 37 1 4.0853 0.0691 -3.2533 38 1 4.4881 -1.5874 -3.8074 39 1 4.4898 0.4807 -7.0867 40 1 5.2242 1.1228 -5.5980 41 1 5.6229 -0.5221 -6.1492 42 1 0.6805 -1.1512 -4.9815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074798530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:55 Heat of formation + Delta-G solvation = -10.047834 kcal Electronic energy + Delta-G solvation = -24730.917629 eV Core-core repulsion = 21133.736751 eV Total energy + Delta-G solvation = -3597.180879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63297 -39.95721 -37.80938 -36.38830 -34.48046 -34.37659 -31.99070 -30.97728 -30.23025 -28.97687 -27.41482 -25.61481 -24.49879 -23.04847 -22.58088 -20.84226 -20.04574 -19.03190 -18.10409 -17.93986 -17.53475 -16.60502 -16.19476 -15.82451 -15.30442 -14.84525 -14.45110 -14.38497 -14.28723 -13.95688 -13.78557 -13.58607 -13.20567 -12.82517 -12.73852 -12.68343 -12.39250 -12.23474 -12.05409 -11.84102 -11.52758 -11.26557 -10.97218 -10.66950 -10.52114 -10.45473 -10.27957 -10.11881 -9.67598 -9.43884 -9.06788 -8.90610 -8.68827 -7.42373 -5.89179 -3.26593 2.13080 2.46268 2.62397 3.00965 3.28597 3.31331 3.38255 3.57255 3.93832 4.13882 4.41929 4.47934 4.65866 4.77215 4.89269 4.96483 5.03644 5.09948 5.20343 5.26400 5.36481 5.39244 5.44672 5.52282 5.57265 5.72455 5.77604 5.91001 6.04399 6.25603 6.32049 6.38350 6.42134 6.47294 6.71744 6.80374 7.14676 7.43793 7.85023 7.99384 8.29504 8.32391 9.06421 9.78693 9.96794 11.28581 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.036268 B = 0.003405 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.838745 B = 8222.422932 C = 8658.052591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 H 0.077 0.923 4 C 0.180 3.820 5 H 0.074 0.926 6 N -0.741 5.741 7 C -0.251 4.251 8 H 0.092 0.908 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.153 4.153 16 C 0.092 3.908 17 N -0.604 5.604 18 C 0.515 3.485 19 O -0.524 6.524 20 C 0.107 3.893 21 H 0.115 0.885 22 C 0.109 3.891 23 N -0.637 5.637 24 C 0.119 3.881 25 C 0.706 3.294 26 O -0.585 6.585 27 N -0.715 5.715 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.368 0.632 32 H 0.261 0.739 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 -2.567 -19.032 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 H 0.095 0.905 4 C 0.068 3.932 5 H 0.092 0.908 6 N -0.385 5.385 7 C -0.381 4.381 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.576 5.576 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.194 4.194 16 C -0.031 4.031 17 N -0.339 5.339 18 C 0.300 3.700 19 O -0.399 6.399 20 C -0.003 4.003 21 H 0.133 0.867 22 C -0.015 4.015 23 N -0.377 5.377 24 C -0.023 4.023 25 C 0.406 3.594 26 O -0.462 6.462 27 N -0.376 5.376 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.204 0.796 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 8.449 -1.820 -19.669 21.484 hybrid contribution -1.696 -0.116 0.105 1.703 sum 6.753 -1.937 -19.564 20.787 Atomic orbital electron populations 1.22090 0.95046 1.02285 1.02869 1.21904 0.95076 0.96226 0.84552 0.90525 1.21153 0.93086 0.92295 0.86659 0.90769 1.42972 1.03817 1.87957 1.03759 1.19048 0.95087 1.42562 0.81357 0.88987 1.24656 0.97378 1.01501 0.95116 1.69688 1.32724 1.55903 0.99295 0.86667 0.86879 0.78037 0.77548 1.20932 1.21504 1.20192 1.23563 1.02075 1.00967 0.92785 1.22547 0.94842 0.88199 0.97510 1.48625 1.50032 1.30546 1.04694 1.20272 0.81767 0.85516 0.82432 1.90742 1.38052 1.28155 1.82971 1.21833 0.91898 1.00888 0.85719 0.86702 1.22232 0.94439 1.01104 0.83761 1.46995 1.09468 1.68161 1.13077 1.21428 0.86484 0.98133 0.96242 1.15789 0.81340 0.77945 0.84300 1.90956 1.78774 1.57825 1.18678 1.44844 1.12763 1.69193 1.10825 0.90680 0.91684 0.92533 0.79585 0.92875 0.89827 0.90682 0.91027 0.90961 0.89512 0.88670 0.89488 0.91981 0.91922 0.72378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 7.94 37.16 0.29 -2.38 16 2 C 0.13 1.89 3.48 -66.96 -0.23 1.66 16 3 H 0.08 1.19 8.14 -51.92 -0.42 0.76 16 4 C 0.18 2.96 3.46 -66.09 -0.23 2.73 16 5 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 6 N -0.74 -15.85 4.78 -51.65 -0.25 -16.09 16 7 C -0.25 -6.53 10.45 -15.06 -0.16 -6.69 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 10 N -0.93 -27.90 13.97 55.49 0.78 -27.13 16 11 Si 0.88 21.12 27.74 -169.99 -4.71 16.40 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.22 6.45 56.52 0.36 -5.86 16 15 C -0.15 -2.02 6.79 -24.47 -0.17 -2.19 16 16 C 0.09 0.86 6.69 -2.41 -0.02 0.84 16 17 N -0.60 -7.27 3.08 -162.88 -0.50 -7.78 16 18 C 0.51 6.44 6.73 -10.99 -0.07 6.37 16 19 O -0.52 -8.76 15.50 5.56 0.09 -8.68 16 20 C 0.11 0.96 3.58 -68.21 -0.24 0.72 16 21 H 0.12 0.70 6.92 -51.93 -0.36 0.34 16 22 C 0.11 0.81 7.32 -3.16 -0.02 0.79 16 23 N -0.64 -6.36 3.36 -186.74 -0.63 -6.99 16 24 C 0.12 0.86 11.21 59.84 0.67 1.53 16 25 C 0.71 9.36 8.60 -88.40 -0.76 8.60 16 26 O -0.58 -9.95 17.29 5.29 0.09 -9.86 16 27 N -0.72 -7.99 5.63 -59.34 -0.33 -8.32 16 28 H 0.07 1.33 6.65 -51.93 -0.35 0.99 16 29 H 0.06 1.08 6.76 -51.93 -0.35 0.73 16 30 H 0.06 0.90 8.06 -51.93 -0.42 0.49 16 31 H 0.37 7.88 2.85 -40.82 -0.12 7.76 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.48 6.92 -51.93 -0.36 0.12 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.66 7.72 -51.93 -0.40 0.25 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.73 7.52 -51.93 -0.39 0.34 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.43 4.52 8.96 -40.82 -0.37 4.16 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -35.33 337.62 -7.50 -42.83 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.08 Total: 8.38 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -1.03 Total: 12.14 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.93 Total: -66.30 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.18 Total: -18.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.33 -7.50 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074798530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.781 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds