Wall clock time and date at job start Tue Mar 31 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.99748 * 2 1 4 4 C 1.54323 * 109.88055 * 121.08690 * 2 1 3 5 5 H 1.09001 * 110.72683 * 215.76778 * 4 2 1 6 6 N 1.46506 * 110.72334 * 338.86666 * 4 2 1 7 7 C 1.36931 * 119.99939 * 202.55648 * 6 4 2 8 8 H 1.08000 * 120.00644 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99715 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99673 * 179.72262 * 9 7 6 11 11 Si 1.86795 * 120.00115 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47274 * 89.99913 * 11 9 7 13 13 H 1.48505 * 109.47015 * 209.99478 * 11 9 7 14 14 H 1.48498 * 109.47362 * 329.99904 * 11 9 7 15 15 C 1.55160 * 103.09835 * 97.31499 * 4 2 1 16 16 C 1.55116 * 101.48737 * 35.28536 * 15 4 2 17 17 N 1.47016 * 109.88470 * 238.90062 * 2 1 3 18 18 C 1.34775 * 125.65139 * 59.48778 * 17 2 1 19 19 O 1.21277 * 119.99610 * 0.02562 * 18 17 2 20 20 C 1.50701 * 120.00208 * 180.02562 * 18 17 2 21 21 H 1.08996 * 110.48689 * 38.74858 * 20 18 17 22 22 C 1.54098 * 110.54638 * 275.89777 * 20 18 17 23 23 N 1.47060 * 103.86211 * 241.40610 * 22 20 18 24 24 C 1.46494 * 125.41227 * 180.02562 * 23 22 20 25 25 C 1.33948 * 109.17662 * 359.97438 * 23 22 20 26 26 O 1.21582 * 123.04084 * 179.97438 * 25 23 22 27 27 N 1.33945 * 113.91544 * 0.02562 * 25 23 22 28 28 H 1.09005 * 109.47326 * 298.90883 * 1 2 3 29 29 H 1.08999 * 109.46594 * 58.90735 * 1 2 3 30 30 H 1.08996 * 109.47323 * 178.91111 * 1 2 3 31 31 H 0.97000 * 119.99307 * 22.55442 * 6 4 2 32 32 H 0.97000 * 120.00043 * 180.02562 * 10 9 7 33 33 H 1.09007 * 111.00432 * 153.49084 * 15 4 2 34 34 H 1.09000 * 111.00219 * 277.33606 * 15 4 2 35 35 H 1.09000 * 110.42436 * 204.29582 * 16 15 4 36 36 H 1.09000 * 110.30169 * 82.08543 * 16 15 4 37 37 H 1.09000 * 110.55444 * 359.97438 * 22 20 18 38 38 H 1.09003 * 110.55373 * 122.81208 * 22 20 18 39 39 H 1.08997 * 109.47313 * 180.02562 * 24 23 22 40 40 H 1.08995 * 109.47157 * 300.02258 * 24 23 22 41 41 H 1.09003 * 109.47115 * 60.02209 * 24 23 22 42 42 H 0.97006 * 125.40896 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7493 1.2428 5 1 2.9639 -0.2811 1.6203 6 7 1.0291 -0.8024 2.2876 7 6 1.3923 -0.9886 3.5947 8 1 2.4348 -1.0967 3.8555 9 6 0.4205 -1.0383 4.5847 10 7 0.7692 -1.2227 5.8404 11 14 -1.3826 -0.8520 4.1338 12 1 -1.9615 -2.1888 3.8454 13 1 -2.1143 -0.2296 5.2663 14 1 -1.5055 0.0105 2.9312 15 6 2.3553 -2.1700 0.6960 16 6 2.8569 -1.8499 -0.7365 17 7 2.0300 -0.7141 -1.1838 18 6 1.7743 -0.3855 -2.4656 19 8 1.0771 0.5742 -2.7180 20 6 2.3548 -1.2104 -3.5852 21 1 2.3354 -2.2695 -3.3284 22 6 3.7917 -0.7544 -3.9043 23 7 3.7164 -0.3047 -5.3024 24 6 4.8349 0.2283 -6.0841 25 6 2.4629 -0.4608 -5.7479 26 8 2.1189 -0.1664 -6.8763 27 7 1.6225 -0.9697 -4.8375 28 1 -0.3634 0.4968 0.8996 29 1 -0.3632 0.5307 -0.8800 30 1 -0.3634 -1.0274 -0.0195 31 1 0.0929 -0.7056 2.0534 32 1 0.0901 -1.2579 6.5322 33 1 3.1316 -2.6591 1.2846 34 1 1.4501 -2.7764 0.6654 35 1 2.7089 -2.7081 -1.3919 36 1 3.9094 -1.5673 -0.7144 37 1 4.0853 0.0691 -3.2533 38 1 4.4881 -1.5874 -3.8074 39 1 4.4898 0.4807 -7.0867 40 1 5.2242 1.1228 -5.5980 41 1 5.6229 -0.5221 -6.1492 42 1 0.6805 -1.1512 -4.9815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074798530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:54 Heat of formation + Delta-G solvation = -38.051430 kcal Electronic energy + Delta-G solvation = -24732.131956 eV Core-core repulsion = 21133.736751 eV Total energy + Delta-G solvation = -3598.395206 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.47649 -41.00737 -38.97855 -37.37556 -36.05082 -35.11939 -33.70885 -32.15636 -31.53225 -29.96182 -28.12287 -26.91971 -25.51392 -24.61651 -23.52197 -21.66183 -21.17918 -20.25179 -19.83717 -18.75639 -18.54264 -17.50093 -17.14022 -16.99578 -16.41090 -16.19344 -15.84142 -15.44112 -15.29493 -15.09049 -14.74789 -14.64811 -14.47289 -14.06485 -13.73210 -13.50391 -13.41514 -13.18622 -13.12175 -13.04408 -12.93157 -12.82572 -12.58776 -12.22990 -11.90692 -11.70851 -11.56345 -11.52964 -11.25769 -10.95618 -10.39481 -9.71493 -9.58816 -9.29789 -8.01614 -5.34320 1.29600 1.37060 1.37936 1.44979 1.58492 1.74486 2.07784 2.47393 2.86391 3.25298 3.26985 3.33169 3.58462 3.74080 3.81734 3.93962 4.08432 4.14296 4.35418 4.42290 4.47865 4.51361 4.57398 4.60824 4.72867 4.78481 4.86744 4.89285 4.94889 5.04225 5.14931 5.27605 5.33300 5.51150 5.61445 5.80068 5.98731 6.22899 6.32862 6.50582 7.03021 7.08798 7.41912 7.84626 8.01192 9.19545 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.036268 B = 0.003405 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.838745 B = 8222.422932 C = 8658.052591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 H 0.068 0.932 4 C 0.168 3.832 5 H 0.071 0.929 6 N -0.748 5.748 7 C -0.222 4.222 8 H 0.068 0.932 9 C -0.059 4.059 10 N -0.981 5.981 11 Si 0.937 3.063 12 H -0.278 1.278 13 H -0.299 1.299 14 H -0.256 1.256 15 C -0.147 4.147 16 C 0.098 3.902 17 N -0.599 5.599 18 C 0.514 3.486 19 O -0.574 6.574 20 C 0.114 3.886 21 H 0.159 0.841 22 C 0.108 3.892 23 N -0.637 5.637 24 C 0.113 3.887 25 C 0.692 3.308 26 O -0.636 6.636 27 N -0.717 5.717 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.368 0.632 32 H 0.257 0.743 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.144 0.856 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 -4.059 -20.842 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.086 0.914 4 C 0.058 3.942 5 H 0.089 0.911 6 N -0.393 5.393 7 C -0.353 4.353 8 H 0.086 0.914 9 C -0.251 4.251 10 N -0.632 5.632 11 Si 0.766 3.234 12 H -0.204 1.204 13 H -0.226 1.226 14 H -0.181 1.181 15 C -0.188 4.188 16 C -0.023 4.023 17 N -0.333 5.333 18 C 0.302 3.698 19 O -0.452 6.452 20 C 0.004 3.996 21 H 0.176 0.824 22 C -0.015 4.015 23 N -0.376 5.376 24 C -0.028 4.028 25 C 0.393 3.607 26 O -0.518 6.518 27 N -0.376 5.376 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.205 0.795 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.162 0.838 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 10.075 -3.338 -21.516 23.992 hybrid contribution -2.065 0.389 0.649 2.199 sum 8.010 -2.949 -20.867 22.545 Atomic orbital electron populations 1.21988 0.96076 1.01981 1.01566 1.21591 0.94161 0.96066 0.85374 0.91395 1.21400 0.91674 0.94996 0.86083 0.91080 1.43002 1.05009 1.88146 1.03144 1.19052 0.93834 1.39182 0.83266 0.91364 1.25346 1.01537 1.03066 0.95105 1.69847 1.33773 1.59052 1.00487 0.85692 0.81916 0.78326 0.77486 1.20426 1.22596 1.18116 1.23392 1.01998 0.97895 0.95484 1.22780 0.95740 0.88551 0.95257 1.48596 1.50012 1.30839 1.03806 1.20964 0.80858 0.85079 0.82922 1.90735 1.40356 1.30496 1.83651 1.22101 0.92104 1.02228 0.83148 0.82421 1.22569 0.94069 1.02897 0.81975 1.47211 1.08702 1.67399 1.14257 1.21632 0.86272 0.99737 0.95144 1.16146 0.82580 0.78017 0.84000 1.90908 1.79881 1.60004 1.20958 1.44914 1.12876 1.68535 1.11315 0.92539 0.92299 0.92300 0.79547 0.93447 0.89376 0.91814 0.86793 0.87648 0.89352 0.83837 0.91515 0.90669 0.88791 0.72464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 7.94 71.98 0.57 -4.40 16 2 C 0.13 3.74 3.48 45.34 0.16 3.90 16 3 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 4 C 0.17 5.23 3.46 46.18 0.16 5.39 16 5 H 0.07 2.27 8.11 -2.39 -0.02 2.25 16 6 N -0.75 -31.38 4.78 -317.31 -1.52 -32.89 16 7 C -0.22 -11.64 10.45 84.04 0.88 -10.76 16 8 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 9 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 10 N -0.98 -60.49 13.97 21.65 0.30 -60.19 16 11 Si 0.94 43.97 27.74 68.60 1.90 45.87 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.26 -10.99 6.45 99.48 0.64 -10.35 16 15 C -0.15 -3.39 6.79 32.06 0.22 -3.17 16 16 C 0.10 1.27 6.69 86.93 0.58 1.86 16 17 N -0.60 -12.22 3.08 -787.63 -2.43 -14.64 16 18 C 0.51 11.25 6.73 87.66 0.59 11.84 16 19 O -0.57 -18.49 15.50 -3.02 -0.05 -18.53 16 20 C 0.11 1.53 3.58 44.51 0.16 1.69 16 21 H 0.16 0.85 6.92 -2.39 -0.02 0.83 16 22 C 0.11 1.05 7.32 86.64 0.63 1.68 16 23 N -0.64 -10.79 3.36 -863.46 -2.90 -13.69 16 24 C 0.11 1.34 11.21 127.77 1.43 2.77 16 25 C 0.69 17.38 8.60 179.57 1.54 18.92 16 26 O -0.64 -21.81 17.29 -3.97 -0.07 -21.88 16 27 N -0.72 -14.45 5.63 -460.37 -2.59 -17.04 16 28 H 0.06 1.96 6.65 -2.38 -0.02 1.95 16 29 H 0.06 1.92 6.76 -2.39 -0.02 1.91 16 30 H 0.06 1.79 8.06 -2.39 -0.02 1.77 16 31 H 0.37 15.37 2.85 -92.71 -0.26 15.10 16 32 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 0.65 6.92 -2.39 -0.02 0.64 16 36 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.90 7.72 -2.39 -0.02 0.88 16 38 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.07 1.08 7.52 -2.39 -0.02 1.06 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 42 H 0.43 8.51 8.96 -92.70 -0.83 7.68 16 Total: -1.00 -82.10 337.62 -0.06 -82.16 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.11 Total: 23.96 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 7.40 Total: 26.89 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -9.13 Total: -138.46 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.12 Total: -40.41 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.90 Total: 45.87 kcal Total: -82.10 -0.06 -82.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074798530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.114 kcal (2) G-P(sol) polarization free energy of solvation -82.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds