Wall clock time and date at job start Tue Mar 31 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 112.84934 * 2 1 4 4 C 1.53782 * 113.61139 * 131.19461 * 2 1 3 5 5 C 1.53778 * 87.08362 * 89.11630 * 4 2 1 6 6 C 1.53001 * 113.61417 * 139.97934 * 5 4 2 7 7 C 1.50703 * 109.46956 * 176.53040 * 6 5 4 8 8 O 1.21285 * 120.00008 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99890 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99803 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.78470 * 36.79251 * 10 9 7 12 12 C 1.54325 * 110.72250 * 273.54657 * 10 9 7 13 13 N 1.47018 * 107.40412 * 219.52320 * 12 10 9 14 14 C 1.36936 * 125.64899 * 178.89496 * 13 12 10 15 15 H 1.07997 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.38819 * 120.00094 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47048 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46969 * 120.00174 * 18 16 14 21 21 H 1.48497 * 109.47276 * 240.00208 * 18 16 14 22 22 C 1.47426 * 108.70517 * 358.86539 * 13 12 10 23 23 C 1.54914 * 104.82992 * 24.12623 * 22 13 12 24 24 H 1.09000 * 111.00339 * 81.07133 * 23 22 13 25 25 O 1.42897 * 111.00144 * 204.87916 * 23 22 13 26 26 C 1.53784 * 87.17117 * 25.39035 * 5 4 2 27 27 H 1.08992 * 109.47767 * 288.80561 * 1 2 3 28 28 H 1.09005 * 109.46611 * 48.80818 * 1 2 3 29 29 H 1.09006 * 109.47168 * 168.80317 * 1 2 3 30 30 H 1.09005 * 109.47276 * 191.19033 * 3 2 1 31 31 H 1.09001 * 109.47252 * 311.19200 * 3 2 1 32 32 H 1.09003 * 109.47408 * 71.19294 * 3 2 1 33 33 H 1.09008 * 113.61368 * 334.56647 * 4 2 1 34 34 H 1.08999 * 113.61558 * 203.66689 * 4 2 1 35 35 H 1.08995 * 113.61650 * 270.80091 * 5 4 2 36 36 H 1.08998 * 109.47063 * 56.53343 * 6 5 4 37 37 H 1.09000 * 109.47222 * 296.53391 * 6 5 4 38 38 H 0.96997 * 119.99763 * 0.02562 * 9 7 6 39 39 H 1.09002 * 109.88192 * 100.02760 * 12 10 9 40 40 H 1.09000 * 109.88128 * 339.01612 * 12 10 9 41 41 H 0.96998 * 120.00119 * 179.97438 * 17 16 14 42 42 H 1.08999 * 110.36956 * 142.96999 * 22 13 12 43 43 H 1.09003 * 110.36599 * 265.28903 * 22 13 12 44 44 H 0.96700 * 114.00238 * 298.54965 * 25 23 22 45 45 H 1.08996 * 113.61631 * 89.15663 * 26 5 4 46 46 H 1.09003 * 113.61345 * 220.05834 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1459 -0.9280 1.0603 5 6 2.0929 -2.0426 0.0021 6 6 3.3264 -2.9478 0.0031 7 6 3.1398 -4.0521 -1.0054 8 8 2.1208 -4.1091 -1.6607 9 7 4.1058 -4.9757 -1.1797 10 6 3.9246 -6.0488 -2.1604 11 1 3.3997 -5.6820 -3.0425 12 6 3.1714 -7.2406 -1.5329 13 7 3.7913 -8.4714 -2.0450 14 6 3.4254 -9.7480 -1.7109 15 1 2.6163 -9.9131 -1.0149 16 6 4.0938 -10.8298 -2.2676 17 7 5.0796 -10.6285 -3.1162 18 14 3.5942 -12.5712 -1.8123 19 1 2.4668 -12.5263 -0.8469 20 1 3.1698 -13.3000 -3.0347 21 1 4.7484 -13.2717 -1.1941 22 6 4.8717 -8.1037 -2.9783 23 6 5.2916 -6.6738 -2.5552 24 1 5.9675 -6.7019 -1.7006 25 8 5.8822 -5.9688 -3.6489 26 6 2.1448 -0.9318 -1.0601 27 1 -0.3634 0.3312 0.9727 28 1 -0.3633 0.6769 -0.7734 29 1 -0.3634 -1.0082 -0.1996 30 1 3.1942 1.3532 -0.1994 31 1 1.6415 2.0075 -0.7733 32 1 1.9599 1.8734 0.9728 33 1 1.4943 -1.1067 1.9157 34 1 3.1590 -0.6486 1.3497 35 1 1.1574 -2.6019 0.0036 36 1 3.4590 -3.3801 0.9948 37 1 4.2074 -2.3618 -0.2586 38 1 4.9208 -4.9298 -0.6559 39 1 2.1204 -7.2076 -1.8202 40 1 3.2601 -7.2049 -0.4471 41 1 5.5469 -11.3844 -3.5049 42 1 5.7112 -8.7914 -2.8767 43 1 4.5029 -8.1029 -4.0040 44 1 6.6883 -6.3784 -3.9916 45 1 3.1575 -0.6533 -1.3516 46 1 1.4924 -1.1136 -1.9142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077558554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:41 Heat of formation + Delta-G solvation = -52.434874 kcal Electronic energy + Delta-G solvation = -24356.119139 eV Core-core repulsion = 20860.640564 eV Total energy + Delta-G solvation = -3495.478575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.30829 -39.16112 -37.67041 -35.07265 -33.97293 -32.45748 -31.63227 -28.88662 -27.87735 -27.60680 -26.67798 -25.82801 -24.40259 -21.66866 -20.70162 -20.08381 -19.75865 -18.44914 -17.26479 -16.95936 -16.51138 -15.72210 -15.58028 -14.89714 -14.83683 -14.39583 -14.28254 -13.98653 -13.66479 -13.41901 -13.16604 -12.94229 -12.82990 -12.48999 -12.23292 -12.10538 -11.98981 -11.84045 -11.54920 -11.45322 -11.26899 -11.00029 -10.89618 -10.86327 -10.68248 -10.17732 -10.16313 -10.11385 -9.94985 -9.68906 -9.67186 -9.24634 -8.73943 -8.72326 -6.93344 -5.74017 -3.16148 2.90406 3.35812 3.39570 3.42786 3.45242 4.30386 4.38807 4.44761 4.51236 4.60950 4.64229 4.94665 5.06965 5.17538 5.28976 5.37401 5.40489 5.40815 5.44563 5.53279 5.59648 5.62563 5.64666 5.68382 5.70316 5.76947 5.78400 5.84307 5.87414 6.04728 6.06690 6.11139 6.19430 6.31907 6.45767 6.52963 6.68582 6.96242 7.29601 7.51531 7.67980 7.79417 8.08773 8.23881 8.50650 9.12469 9.72955 10.35527 11.30528 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029668 B = 0.002863 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.563813 B = 9776.705327 C =10368.084153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.129 4.129 5 C -0.091 4.091 6 C -0.131 4.131 7 C 0.511 3.489 8 O -0.539 6.539 9 N -0.718 5.718 10 C 0.142 3.858 11 H 0.098 0.902 12 C 0.130 3.870 13 N -0.601 5.601 14 C -0.221 4.221 15 H 0.081 0.919 16 C -0.012 4.012 17 N -0.925 5.925 18 Si 0.918 3.082 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.129 3.871 23 C 0.067 3.933 24 H 0.061 0.939 25 O -0.567 6.567 26 C -0.124 4.124 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.397 0.603 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.253 0.747 42 H 0.113 0.887 43 H 0.025 0.975 44 H 0.378 0.622 45 H 0.077 0.923 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 20.300 7.424 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.192 4.192 4 C -0.166 4.166 5 C -0.110 4.110 6 C -0.171 4.171 7 C 0.297 3.703 8 O -0.416 6.416 9 N -0.369 5.369 10 C 0.037 3.963 11 H 0.116 0.884 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.349 4.349 15 H 0.099 0.901 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.748 3.252 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.003 3.997 23 C 0.007 3.993 24 H 0.079 0.921 25 O -0.372 6.372 26 C -0.161 4.161 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.231 0.769 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.130 0.870 43 H 0.043 0.957 44 H 0.225 0.775 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.545 20.443 7.002 21.664 hybrid contribution 0.678 -1.345 0.331 1.542 sum -0.867 19.098 7.332 20.475 Atomic orbital electron populations 1.21599 0.93284 1.02237 1.01493 1.21799 0.95579 0.94273 0.97511 1.21721 1.00409 0.95614 1.01410 1.23134 1.00983 0.95924 0.96573 1.22259 0.98216 0.93832 0.96702 1.21692 1.00184 0.96105 0.99151 1.20660 0.83288 0.82468 0.83834 1.90693 1.28005 1.75216 1.47674 1.46025 1.20690 1.28398 1.41751 1.22001 0.96094 0.86679 0.91487 0.88438 1.21623 0.95891 0.85674 0.96475 1.44303 1.37328 1.00398 1.50788 1.19162 1.13675 0.80752 1.21318 0.90146 1.24808 0.98573 0.98205 0.99129 1.69740 1.24863 1.29033 1.33732 0.85943 0.77622 0.83999 0.77615 1.20440 1.21649 1.21678 1.22571 0.94729 0.90006 0.92415 1.23685 0.92492 0.94573 0.88593 0.92107 1.86401 1.45298 1.53856 1.51625 1.23135 1.00899 0.95164 0.96888 0.92612 0.92541 0.92088 0.92646 0.92777 0.92788 0.91506 0.90119 0.88239 0.88944 0.89118 0.76908 0.94924 0.95271 0.93642 0.86953 0.95697 0.77530 0.90423 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.07 37.16 0.34 -0.75 16 2 C -0.09 -0.79 1.39 -153.61 -0.21 -1.01 16 3 C -0.13 -1.00 9.20 37.15 0.34 -0.66 16 4 C -0.13 -1.08 6.79 -25.92 -0.18 -1.25 16 5 C -0.09 -0.97 2.76 -89.81 -0.25 -1.22 16 6 C -0.13 -1.37 5.52 -27.88 -0.15 -1.52 16 7 C 0.51 7.74 7.83 -10.98 -0.09 7.66 16 8 O -0.54 -10.35 15.52 5.55 0.09 -10.26 16 9 N -0.72 -10.90 5.13 -51.90 -0.27 -11.17 16 10 C 0.14 2.73 2.99 -65.96 -0.20 2.53 16 11 H 0.10 2.09 7.70 -51.93 -0.40 1.69 16 12 C 0.13 2.88 6.98 -3.07 -0.02 2.86 16 13 N -0.60 -15.47 3.39 -170.07 -0.58 -16.04 16 14 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 15 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 17 N -0.92 -26.40 10.09 55.49 0.56 -25.84 16 18 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.13 3.07 5.62 -2.53 -0.01 3.05 16 23 C 0.07 1.26 4.05 -24.44 -0.10 1.16 16 24 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 25 O -0.57 -9.77 13.48 -35.23 -0.47 -10.25 16 26 C -0.12 -1.28 6.76 -25.83 -0.17 -1.46 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 30 H 0.05 0.40 7.96 -51.93 -0.41 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.54 8.10 -51.92 -0.42 0.12 16 34 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.10 1.25 7.25 -51.93 -0.38 0.87 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.79 7.88 -51.93 -0.41 0.38 16 38 H 0.40 4.86 8.53 -40.82 -0.35 4.51 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.11 2.92 5.87 -51.93 -0.31 2.61 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.38 5.00 9.11 45.56 0.42 5.42 16 45 H 0.08 0.76 7.75 -51.93 -0.40 0.36 16 46 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -32.43 366.02 -8.35 -40.78 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.22 Total: 7.73 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.96 Total: 2.66 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.28 Total: -53.05 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.39 Total: -20.51 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.43 -8.35 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077558554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.655 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds