Wall clock time and date at job start Tue Mar 31 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 112.84934 * 2 1 4 4 C 1.53782 * 113.61139 * 131.19461 * 2 1 3 5 5 C 1.53778 * 87.08362 * 89.11630 * 4 2 1 6 6 C 1.53001 * 113.61417 * 139.97934 * 5 4 2 7 7 C 1.50703 * 109.46956 * 176.53040 * 6 5 4 8 8 O 1.21285 * 120.00008 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99890 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99803 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.78470 * 36.79251 * 10 9 7 12 12 C 1.54325 * 110.72250 * 273.54657 * 10 9 7 13 13 N 1.47018 * 107.40412 * 219.52320 * 12 10 9 14 14 C 1.36936 * 125.64899 * 178.89496 * 13 12 10 15 15 H 1.07997 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.38819 * 120.00094 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47048 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46969 * 120.00174 * 18 16 14 21 21 H 1.48497 * 109.47276 * 240.00208 * 18 16 14 22 22 C 1.47426 * 108.70517 * 358.86539 * 13 12 10 23 23 C 1.54914 * 104.82992 * 24.12623 * 22 13 12 24 24 H 1.09000 * 111.00339 * 81.07133 * 23 22 13 25 25 O 1.42897 * 111.00144 * 204.87916 * 23 22 13 26 26 C 1.53784 * 87.17117 * 25.39035 * 5 4 2 27 27 H 1.08992 * 109.47767 * 288.80561 * 1 2 3 28 28 H 1.09005 * 109.46611 * 48.80818 * 1 2 3 29 29 H 1.09006 * 109.47168 * 168.80317 * 1 2 3 30 30 H 1.09005 * 109.47276 * 191.19033 * 3 2 1 31 31 H 1.09001 * 109.47252 * 311.19200 * 3 2 1 32 32 H 1.09003 * 109.47408 * 71.19294 * 3 2 1 33 33 H 1.09008 * 113.61368 * 334.56647 * 4 2 1 34 34 H 1.08999 * 113.61558 * 203.66689 * 4 2 1 35 35 H 1.08995 * 113.61650 * 270.80091 * 5 4 2 36 36 H 1.08998 * 109.47063 * 56.53343 * 6 5 4 37 37 H 1.09000 * 109.47222 * 296.53391 * 6 5 4 38 38 H 0.96997 * 119.99763 * 0.02562 * 9 7 6 39 39 H 1.09002 * 109.88192 * 100.02760 * 12 10 9 40 40 H 1.09000 * 109.88128 * 339.01612 * 12 10 9 41 41 H 0.96998 * 120.00119 * 179.97438 * 17 16 14 42 42 H 1.08999 * 110.36956 * 142.96999 * 22 13 12 43 43 H 1.09003 * 110.36599 * 265.28903 * 22 13 12 44 44 H 0.96700 * 114.00238 * 298.54965 * 25 23 22 45 45 H 1.08996 * 113.61631 * 89.15663 * 26 5 4 46 46 H 1.09003 * 113.61345 * 220.05834 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1459 -0.9280 1.0603 5 6 2.0929 -2.0426 0.0021 6 6 3.3264 -2.9478 0.0031 7 6 3.1398 -4.0521 -1.0054 8 8 2.1208 -4.1091 -1.6607 9 7 4.1058 -4.9757 -1.1797 10 6 3.9246 -6.0488 -2.1604 11 1 3.3997 -5.6820 -3.0425 12 6 3.1714 -7.2406 -1.5329 13 7 3.7913 -8.4714 -2.0450 14 6 3.4254 -9.7480 -1.7109 15 1 2.6163 -9.9131 -1.0149 16 6 4.0938 -10.8298 -2.2676 17 7 5.0796 -10.6285 -3.1162 18 14 3.5942 -12.5712 -1.8123 19 1 2.4668 -12.5263 -0.8469 20 1 3.1698 -13.3000 -3.0347 21 1 4.7484 -13.2717 -1.1941 22 6 4.8717 -8.1037 -2.9783 23 6 5.2916 -6.6738 -2.5552 24 1 5.9675 -6.7019 -1.7006 25 8 5.8822 -5.9688 -3.6489 26 6 2.1448 -0.9318 -1.0601 27 1 -0.3634 0.3312 0.9727 28 1 -0.3633 0.6769 -0.7734 29 1 -0.3634 -1.0082 -0.1996 30 1 3.1942 1.3532 -0.1994 31 1 1.6415 2.0075 -0.7733 32 1 1.9599 1.8734 0.9728 33 1 1.4943 -1.1067 1.9157 34 1 3.1590 -0.6486 1.3497 35 1 1.1574 -2.6019 0.0036 36 1 3.4590 -3.3801 0.9948 37 1 4.2074 -2.3618 -0.2586 38 1 4.9208 -4.9298 -0.6559 39 1 2.1204 -7.2076 -1.8202 40 1 3.2601 -7.2049 -0.4471 41 1 5.5469 -11.3844 -3.5049 42 1 5.7112 -8.7914 -2.8767 43 1 4.5029 -8.1029 -4.0040 44 1 6.6883 -6.3784 -3.9916 45 1 3.1575 -0.6533 -1.3516 46 1 1.4924 -1.1136 -1.9142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077558554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:41 Heat of formation + Delta-G solvation = -75.782307 kcal Electronic energy + Delta-G solvation = -24357.131560 eV Core-core repulsion = 20860.640564 eV Total energy + Delta-G solvation = -3496.490996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32902 -40.33888 -39.16578 -36.70110 -35.53155 -33.74649 -33.07141 -30.42194 -29.26204 -28.28605 -28.16390 -26.55639 -26.27591 -22.89883 -22.37721 -21.59629 -20.91524 -19.21497 -19.07558 -18.41940 -17.85223 -17.33604 -16.69716 -16.43762 -15.96137 -15.58392 -15.47439 -15.11418 -15.00168 -14.80639 -14.54056 -14.15725 -13.96943 -13.72983 -13.55914 -13.25123 -13.21479 -13.02295 -12.84559 -12.76871 -12.73416 -12.64609 -12.24030 -12.03883 -11.96319 -11.67017 -11.43414 -11.41112 -11.14816 -10.93672 -10.84942 -10.80168 -10.63670 -10.13725 -9.00107 -7.84676 -5.31004 1.46053 1.47378 1.57767 1.70449 2.14625 2.45728 3.05811 3.27116 3.57242 3.60996 3.67537 3.76912 3.80507 3.87229 4.03583 4.11576 4.19273 4.33839 4.41382 4.45985 4.58328 4.61674 4.72263 4.80984 4.81431 4.83315 4.90710 4.95210 4.99358 5.04226 5.06830 5.08129 5.21863 5.33245 5.35109 5.37402 5.41662 5.49629 5.62792 5.64888 5.71751 6.18570 6.60668 6.83921 7.02499 7.32411 7.66260 8.28667 9.17520 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029668 B = 0.002863 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.563813 B = 9776.705327 C =10368.084153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.114 4.114 5 C -0.099 4.099 6 C -0.120 4.120 7 C 0.506 3.494 8 O -0.586 6.586 9 N -0.706 5.706 10 C 0.156 3.844 11 H 0.070 0.930 12 C 0.132 3.868 13 N -0.619 5.619 14 C -0.244 4.244 15 H 0.080 0.920 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.984 3.016 19 H -0.269 1.269 20 H -0.293 1.293 21 H -0.284 1.284 22 C 0.132 3.868 23 C 0.093 3.907 24 H 0.088 0.912 25 O -0.568 6.568 26 C -0.130 4.130 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.416 0.584 39 H 0.010 0.990 40 H 0.040 0.960 41 H 0.251 0.749 42 H 0.092 0.908 43 H -0.010 1.010 44 H 0.397 0.603 45 H 0.087 0.913 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 21.781 9.513 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.189 4.189 4 C -0.151 4.151 5 C -0.118 4.118 6 C -0.159 4.159 7 C 0.295 3.705 8 O -0.466 6.466 9 N -0.359 5.359 10 C 0.049 3.951 11 H 0.088 0.912 12 C 0.006 3.994 13 N -0.347 5.347 14 C -0.373 4.373 15 H 0.098 0.902 16 C -0.254 4.254 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.194 1.194 20 H -0.220 1.220 21 H -0.211 1.211 22 C 0.006 3.994 23 C 0.032 3.968 24 H 0.106 0.894 25 O -0.376 6.376 26 C -0.167 4.167 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.254 0.746 39 H 0.028 0.972 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.008 0.992 44 H 0.247 0.753 45 H 0.106 0.894 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.157 21.956 9.114 23.772 hybrid contribution 0.208 -1.800 -0.394 1.854 sum 0.051 20.156 8.720 21.961 Atomic orbital electron populations 1.21610 0.93645 1.01268 1.02237 1.21804 0.95405 0.95033 0.96758 1.21702 1.00641 0.94514 1.02022 1.23092 1.02198 0.93968 0.95856 1.22231 0.97188 0.94207 0.98168 1.21755 1.01074 0.94415 0.98646 1.21617 0.82166 0.82882 0.83834 1.90686 1.29956 1.76324 1.49618 1.45859 1.21748 1.27210 1.41054 1.21509 0.95571 0.86635 0.91361 0.91168 1.21666 0.94931 0.85790 0.97038 1.44565 1.38175 1.00904 1.51069 1.19478 1.13987 0.82128 1.21670 0.90216 1.25648 0.98703 1.01905 0.99192 1.69956 1.25497 1.29822 1.34320 0.84927 0.77579 0.79078 0.77199 1.19375 1.21968 1.21077 1.22406 0.93390 0.93008 0.90574 1.23298 0.92765 0.91091 0.89641 0.89424 1.86373 1.46481 1.53467 1.51274 1.23190 1.01024 0.96146 0.96362 0.91359 0.92421 0.93822 0.91993 0.92931 0.91705 0.90978 0.88057 0.91057 0.86264 0.86200 0.74647 0.97222 0.94154 0.93911 0.88995 0.99170 0.75264 0.89443 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.07 71.98 0.65 -1.48 16 2 C -0.09 -1.40 1.39 -51.60 -0.07 -1.48 16 3 C -0.13 -1.62 9.20 71.98 0.66 -0.96 16 4 C -0.11 -1.58 6.79 31.12 0.21 -1.37 16 5 C -0.10 -1.97 2.76 -10.27 -0.03 -2.00 16 6 C -0.12 -2.15 5.52 29.85 0.16 -1.99 16 7 C 0.51 14.78 7.83 87.66 0.69 15.46 16 8 O -0.59 -23.02 15.52 -3.04 -0.05 -23.07 16 9 N -0.71 -20.22 5.13 -436.51 -2.24 -22.46 16 10 C 0.16 5.96 2.99 46.27 0.14 6.10 16 11 H 0.07 3.10 7.70 -2.39 -0.02 3.08 16 12 C 0.13 5.95 6.98 86.73 0.61 6.56 16 13 N -0.62 -32.59 3.39 -691.97 -2.35 -34.94 16 14 C -0.24 -13.82 10.27 84.04 0.86 -12.96 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 16 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 17 N -0.95 -54.96 10.09 21.65 0.22 -54.74 16 18 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 C 0.13 6.44 5.62 86.86 0.49 6.93 16 23 C 0.09 3.40 4.05 32.08 0.13 3.53 16 24 H 0.09 2.82 8.01 -2.39 -0.02 2.80 16 25 O -0.57 -18.72 13.48 -148.98 -2.01 -20.73 16 26 C -0.13 -2.59 6.76 31.18 0.21 -2.38 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.04 0.85 7.34 -2.38 -0.02 0.83 16 30 H 0.06 0.69 7.96 -2.38 -0.02 0.67 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.95 8.10 -2.38 -0.02 0.94 16 34 H 0.10 1.04 8.06 -2.39 -0.02 1.02 16 35 H 0.07 1.83 7.25 -2.39 -0.02 1.81 16 36 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.54 7.88 -2.39 -0.02 1.52 16 38 H 0.42 8.79 8.53 -92.71 -0.79 8.00 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 41 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.09 4.88 5.87 -2.39 -0.01 4.86 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.40 9.78 9.11 -74.06 -0.67 9.11 16 45 H 0.09 1.55 7.75 -2.39 -0.02 1.53 16 46 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -72.87 366.02 0.29 -72.59 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.49 Total: 25.14 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.18 Total: 10.97 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -4.37 Total: -112.14 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -2.06 Total: -43.80 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.87 0.29 -72.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077558554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.197 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds