Wall clock time and date at job start Tue Mar 31 2020 03:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.01792 * 2 1 4 4 C 1.53873 * 110.03254 * 238.56230 * 2 1 3 5 5 C 1.54271 * 106.59672 * 240.71324 * 4 2 1 6 6 C 1.54887 * 104.19554 * 336.38739 * 5 4 2 7 7 H 1.08996 * 110.75911 * 279.62375 * 6 5 4 8 8 C 1.50702 * 110.91441 * 156.32986 * 6 5 4 9 9 O 1.21282 * 120.00300 * 246.58315 * 8 6 5 10 10 N 1.34772 * 120.00163 * 66.57832 * 8 6 5 11 11 C 1.46502 * 120.00278 * 179.97438 * 10 8 6 12 12 H 1.09004 * 110.63677 * 36.69277 * 11 10 8 13 13 C 1.54317 * 110.72148 * 273.54874 * 11 10 8 14 14 N 1.47022 * 107.27502 * 219.44205 * 13 11 10 15 15 C 1.36927 * 125.65319 * 178.90787 * 14 13 11 16 16 H 1.08001 * 119.99899 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00316 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99633 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00371 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46884 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47012 * 119.99846 * 19 17 15 22 22 H 1.48499 * 109.47426 * 240.00641 * 19 17 15 23 23 C 1.47431 * 108.69994 * 358.94052 * 14 13 11 24 24 C 1.54915 * 104.83001 * 24.12950 * 23 14 13 25 25 H 1.09002 * 111.00271 * 81.06167 * 24 23 14 26 26 O 1.42903 * 111.00421 * 204.91216 * 24 23 14 27 27 C 1.54266 * 110.03511 * 121.39423 * 2 1 3 28 28 H 1.09002 * 109.47153 * 298.60681 * 1 2 3 29 29 H 1.09001 * 109.46832 * 178.60872 * 1 2 3 30 30 H 1.09004 * 109.47261 * 58.60853 * 1 2 3 31 31 H 1.08997 * 109.47104 * 60.69903 * 3 2 1 32 32 H 1.08997 * 109.47748 * 180.70185 * 3 2 1 33 33 H 1.09005 * 109.47116 * 300.70023 * 3 2 1 34 34 H 1.09004 * 110.03436 * 359.97438 * 4 2 1 35 35 H 1.08994 * 110.03897 * 121.42847 * 4 2 1 36 36 H 1.08997 * 110.48569 * 217.70882 * 5 4 2 37 37 H 1.08998 * 110.48772 * 95.06851 * 5 4 2 38 38 H 0.97000 * 119.99816 * 0.02562 * 10 8 6 39 39 H 1.09000 * 109.88527 * 338.86404 * 13 11 10 40 40 H 1.09005 * 109.87980 * 100.02755 * 13 11 10 41 41 H 0.97004 * 119.99717 * 180.02562 * 18 17 15 42 42 H 1.08998 * 110.36266 * 142.96292 * 23 14 13 43 43 H 1.08998 * 110.37225 * 265.17931 * 23 14 13 44 44 H 0.96696 * 114.00025 * 292.19783 * 26 24 23 45 45 H 1.09000 * 110.48098 * 261.57335 * 27 2 1 46 46 H 1.08992 * 110.48685 * 24.07836 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7540 -1.2334 5 6 2.8875 -1.9409 -0.7027 6 6 3.3137 -1.5004 0.7197 7 1 4.1710 -0.8288 0.6754 8 6 3.6190 -2.6963 1.5844 9 8 2.9121 -2.9529 2.5360 10 7 4.6773 -3.4808 1.3003 11 6 4.9744 -4.6431 2.1412 12 1 4.0535 -5.1201 2.4765 13 6 5.8486 -4.2361 3.3460 14 7 6.8336 -5.3079 3.5525 15 6 7.8100 -5.3205 4.5124 16 1 7.9020 -4.4927 5.1999 17 6 8.6809 -6.3977 4.6026 18 7 8.5685 -7.4067 3.7650 19 14 10.0134 -6.4145 5.9117 20 1 9.9284 -5.1720 6.7205 21 1 9.8247 -7.5933 6.7948 22 1 11.3459 -6.4918 5.2608 23 6 6.5965 -6.3666 2.5542 24 6 5.8758 -5.6531 1.3831 25 1 6.5897 -5.1353 0.7425 26 8 5.0884 -6.5759 0.6278 27 6 2.0585 -0.7550 1.2371 28 1 -0.3633 0.4920 0.9022 29 1 -0.3633 -1.0274 -0.0250 30 1 -0.3634 0.5353 -0.8773 31 1 1.7055 1.9511 0.8962 32 1 3.1436 1.4273 -0.0126 33 1 1.6851 1.9586 -0.8837 34 1 1.2229 -1.1203 -1.8318 35 1 2.6866 -0.0961 -1.8325 36 1 3.7637 -2.1042 -1.3301 37 1 2.2772 -2.8428 -0.6559 38 1 5.2428 -3.2754 0.5394 39 1 6.3608 -3.2980 3.1324 40 1 5.2272 -4.1275 4.2350 41 1 9.1768 -8.1596 3.8282 42 1 7.5432 -6.7883 2.2164 43 1 5.9619 -7.1476 2.9728 44 1 5.6084 -7.2268 0.1369 45 1 2.3297 -0.0527 2.0254 46 1 1.3134 -1.4636 1.5986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077626328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:08 Heat of formation + Delta-G solvation = -79.756536 kcal Electronic energy + Delta-G solvation = -24764.066067 eV Core-core repulsion = 21267.402735 eV Total energy + Delta-G solvation = -3496.663332 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23511 -38.66582 -37.49489 -35.07873 -34.01545 -32.61800 -31.55658 -29.16777 -28.37093 -27.52012 -27.02992 -25.12256 -24.17794 -22.13922 -20.67878 -20.10263 -19.66196 -18.88972 -17.34331 -16.99995 -16.67206 -15.76819 -15.57460 -14.90841 -14.53299 -14.44107 -13.93817 -13.82065 -13.68308 -13.46456 -13.33242 -13.18115 -12.88082 -12.34835 -12.23565 -11.97865 -11.78037 -11.69891 -11.51159 -11.26748 -11.19907 -10.98269 -10.86134 -10.84784 -10.73998 -10.70444 -10.62584 -10.16300 -9.93427 -9.73495 -9.64899 -9.22207 -8.73410 -8.72570 -6.92632 -5.73158 -3.15399 2.86531 3.35851 3.38541 3.42984 3.45449 4.29523 4.33647 4.40484 4.53623 4.61449 4.93893 5.04197 5.07234 5.16343 5.25503 5.31844 5.35414 5.41352 5.43201 5.45596 5.58490 5.62604 5.63371 5.67208 5.74986 5.79913 5.86556 5.87838 5.89739 6.04564 6.08885 6.13897 6.19867 6.21485 6.29590 6.52086 6.68595 6.95369 7.31020 7.52362 7.68858 7.78558 8.08957 8.24578 8.48614 9.13181 9.73630 10.36255 11.31188 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.003147 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.271175 B = 8894.984207 C = 9435.120303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.114 4.114 7 H 0.099 0.901 8 C 0.519 3.481 9 O -0.540 6.540 10 N -0.715 5.715 11 C 0.142 3.858 12 H 0.098 0.902 13 C 0.130 3.870 14 N -0.601 5.601 15 C -0.221 4.221 16 H 0.081 0.919 17 C -0.012 4.012 18 N -0.924 5.924 19 Si 0.918 3.082 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.129 3.871 24 C 0.068 3.932 25 H 0.061 0.939 26 O -0.566 6.566 27 C -0.095 4.095 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.397 0.603 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.253 0.747 42 H 0.112 0.888 43 H 0.025 0.975 44 H 0.377 0.623 45 H 0.069 0.931 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 13.179 -13.010 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.136 4.136 7 H 0.117 0.883 8 C 0.305 3.695 9 O -0.417 6.417 10 N -0.365 5.365 11 C 0.037 3.963 12 H 0.116 0.884 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.349 4.349 16 H 0.098 0.902 17 C -0.207 4.207 18 N -0.573 5.573 19 Si 0.748 3.252 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.003 3.997 24 C 0.007 3.993 25 H 0.079 0.921 26 O -0.371 6.371 27 C -0.133 4.133 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.130 0.870 43 H 0.043 0.957 44 H 0.224 0.776 45 H 0.087 0.913 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.747 13.218 -11.975 21.357 hybrid contribution 1.495 -0.301 0.132 1.531 sum -10.252 12.918 -11.843 20.303 Atomic orbital electron populations 1.21905 0.94346 1.01835 1.01496 1.21206 0.95597 0.95372 0.95101 1.21920 1.00960 0.95144 1.01538 1.22276 0.99383 0.96520 0.96962 1.22315 1.00076 0.98732 0.93851 1.22290 1.00309 0.95448 0.95531 0.88294 1.20480 0.80147 0.83797 0.85061 1.90693 1.49174 1.72165 1.29677 1.46013 1.29862 1.28669 1.31934 1.21986 0.99036 0.84460 0.90801 0.88415 1.21627 0.90757 0.92633 0.94660 1.44304 1.33965 1.18065 1.36490 1.19160 1.05188 1.03464 1.07133 0.90157 1.24806 0.99854 0.96397 0.99632 1.69750 1.39771 1.09235 1.38551 0.85944 0.81195 0.77442 0.80609 1.20444 1.21658 1.21692 1.22544 1.00522 0.90181 0.86404 1.23629 0.91540 0.90481 0.93616 0.92095 1.86413 1.37301 1.47201 1.66140 1.22344 0.95984 0.98552 0.96373 0.92654 0.92479 0.92847 0.92663 0.92537 0.92826 0.91488 0.91498 0.91032 0.91019 0.76906 0.95256 0.94886 0.93661 0.87004 0.95664 0.77626 0.91259 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.15 37.16 0.30 -0.80 16 2 C -0.07 -0.62 0.94 -153.39 -0.14 -0.76 16 3 C -0.14 -1.03 8.15 37.16 0.30 -0.73 16 4 C -0.11 -0.91 6.11 -25.61 -0.16 -1.06 16 5 C -0.11 -1.04 6.27 -25.07 -0.16 -1.20 16 6 C -0.11 -1.27 3.28 -89.78 -0.29 -1.56 16 7 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 8 C 0.52 8.04 7.14 -10.99 -0.08 7.96 16 9 O -0.54 -10.60 15.46 5.56 0.09 -10.51 16 10 N -0.71 -10.93 5.13 -52.03 -0.27 -11.20 16 11 C 0.14 2.73 2.97 -66.10 -0.20 2.53 16 12 H 0.10 2.10 7.69 -51.93 -0.40 1.71 16 13 C 0.13 2.89 6.99 -3.07 -0.02 2.87 16 14 N -0.60 -15.49 3.39 -170.07 -0.58 -16.06 16 15 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 16 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 19 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.13 3.09 5.62 -2.52 -0.01 3.08 16 24 C 0.07 1.27 4.04 -24.58 -0.10 1.17 16 25 H 0.06 1.06 8.00 -51.93 -0.42 0.64 16 26 O -0.57 -9.70 13.47 -35.23 -0.47 -10.18 16 27 C -0.09 -1.04 4.97 -25.07 -0.12 -1.16 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 35 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.40 4.95 8.52 -40.82 -0.35 4.60 16 39 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.11 2.91 5.87 -51.93 -0.31 2.61 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.38 4.89 9.12 45.56 0.42 5.31 16 45 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 46 H 0.08 1.06 7.16 -51.93 -0.37 0.68 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -32.40 361.99 -8.41 -40.81 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.24 Total: 7.06 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.93 Total: 3.58 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.28 Total: -53.11 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.39 Total: -20.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.40 -8.41 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077626328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.950 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds