Wall clock time and date at job start Tue Mar 31 2020 03:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.01792 * 2 1 4 4 C 1.53873 * 110.03254 * 238.56230 * 2 1 3 5 5 C 1.54271 * 106.59672 * 240.71324 * 4 2 1 6 6 C 1.54887 * 104.19554 * 336.38739 * 5 4 2 7 7 H 1.08996 * 110.75911 * 279.62375 * 6 5 4 8 8 C 1.50702 * 110.91441 * 156.32986 * 6 5 4 9 9 O 1.21282 * 120.00300 * 246.58315 * 8 6 5 10 10 N 1.34772 * 120.00163 * 66.57832 * 8 6 5 11 11 C 1.46502 * 120.00278 * 179.97438 * 10 8 6 12 12 H 1.09004 * 110.63677 * 36.69277 * 11 10 8 13 13 C 1.54317 * 110.72148 * 273.54874 * 11 10 8 14 14 N 1.47022 * 107.27502 * 219.44205 * 13 11 10 15 15 C 1.36927 * 125.65319 * 178.90787 * 14 13 11 16 16 H 1.08001 * 119.99899 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00316 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99633 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00371 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46884 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47012 * 119.99846 * 19 17 15 22 22 H 1.48499 * 109.47426 * 240.00641 * 19 17 15 23 23 C 1.47431 * 108.69994 * 358.94052 * 14 13 11 24 24 C 1.54915 * 104.83001 * 24.12950 * 23 14 13 25 25 H 1.09002 * 111.00271 * 81.06167 * 24 23 14 26 26 O 1.42903 * 111.00421 * 204.91216 * 24 23 14 27 27 C 1.54266 * 110.03511 * 121.39423 * 2 1 3 28 28 H 1.09002 * 109.47153 * 298.60681 * 1 2 3 29 29 H 1.09001 * 109.46832 * 178.60872 * 1 2 3 30 30 H 1.09004 * 109.47261 * 58.60853 * 1 2 3 31 31 H 1.08997 * 109.47104 * 60.69903 * 3 2 1 32 32 H 1.08997 * 109.47748 * 180.70185 * 3 2 1 33 33 H 1.09005 * 109.47116 * 300.70023 * 3 2 1 34 34 H 1.09004 * 110.03436 * 359.97438 * 4 2 1 35 35 H 1.08994 * 110.03897 * 121.42847 * 4 2 1 36 36 H 1.08997 * 110.48569 * 217.70882 * 5 4 2 37 37 H 1.08998 * 110.48772 * 95.06851 * 5 4 2 38 38 H 0.97000 * 119.99816 * 0.02562 * 10 8 6 39 39 H 1.09000 * 109.88527 * 338.86404 * 13 11 10 40 40 H 1.09005 * 109.87980 * 100.02755 * 13 11 10 41 41 H 0.97004 * 119.99717 * 180.02562 * 18 17 15 42 42 H 1.08998 * 110.36266 * 142.96292 * 23 14 13 43 43 H 1.08998 * 110.37225 * 265.17931 * 23 14 13 44 44 H 0.96696 * 114.00025 * 292.19783 * 26 24 23 45 45 H 1.09000 * 110.48098 * 261.57335 * 27 2 1 46 46 H 1.08992 * 110.48685 * 24.07836 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7540 -1.2334 5 6 2.8875 -1.9409 -0.7027 6 6 3.3137 -1.5004 0.7197 7 1 4.1710 -0.8288 0.6754 8 6 3.6190 -2.6963 1.5844 9 8 2.9121 -2.9529 2.5360 10 7 4.6773 -3.4808 1.3003 11 6 4.9744 -4.6431 2.1412 12 1 4.0535 -5.1201 2.4765 13 6 5.8486 -4.2361 3.3460 14 7 6.8336 -5.3079 3.5525 15 6 7.8100 -5.3205 4.5124 16 1 7.9020 -4.4927 5.1999 17 6 8.6809 -6.3977 4.6026 18 7 8.5685 -7.4067 3.7650 19 14 10.0134 -6.4145 5.9117 20 1 9.9284 -5.1720 6.7205 21 1 9.8247 -7.5933 6.7948 22 1 11.3459 -6.4918 5.2608 23 6 6.5965 -6.3666 2.5542 24 6 5.8758 -5.6531 1.3831 25 1 6.5897 -5.1353 0.7425 26 8 5.0884 -6.5759 0.6278 27 6 2.0585 -0.7550 1.2371 28 1 -0.3633 0.4920 0.9022 29 1 -0.3633 -1.0274 -0.0250 30 1 -0.3634 0.5353 -0.8773 31 1 1.7055 1.9511 0.8962 32 1 3.1436 1.4273 -0.0126 33 1 1.6851 1.9586 -0.8837 34 1 1.2229 -1.1203 -1.8318 35 1 2.6866 -0.0961 -1.8325 36 1 3.7637 -2.1042 -1.3301 37 1 2.2772 -2.8428 -0.6559 38 1 5.2428 -3.2754 0.5394 39 1 6.3608 -3.2980 3.1324 40 1 5.2272 -4.1275 4.2350 41 1 9.1768 -8.1596 3.8282 42 1 7.5432 -6.7883 2.2164 43 1 5.9619 -7.1476 2.9728 44 1 5.6084 -7.2268 0.1369 45 1 2.3297 -0.0527 2.0254 46 1 1.3134 -1.4636 1.5986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077626328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:08 Heat of formation + Delta-G solvation = -103.198601 kcal Electronic energy + Delta-G solvation = -24765.082591 eV Core-core repulsion = 21267.402735 eV Total energy + Delta-G solvation = -3497.679856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39940 -39.92919 -38.81131 -36.70817 -35.58234 -33.84965 -33.06932 -30.32922 -29.80657 -28.75173 -28.10726 -26.63050 -25.47171 -23.20180 -22.41376 -21.70268 -20.87774 -19.60133 -19.11439 -18.47503 -18.02773 -17.30789 -16.69150 -16.53422 -15.80242 -15.72621 -15.33601 -15.09547 -14.80258 -14.56499 -14.43654 -14.16514 -14.07704 -13.97435 -13.73155 -13.23809 -13.15181 -12.94882 -12.82992 -12.76579 -12.60023 -12.35085 -12.05693 -12.01620 -11.95512 -11.61020 -11.47465 -11.41560 -11.37557 -11.28661 -11.12012 -10.80861 -10.69219 -10.17295 -8.99766 -7.84037 -5.30547 1.46326 1.47700 1.58029 1.62565 2.09638 2.45791 3.06144 3.27550 3.48735 3.52929 3.61460 3.76873 3.84873 4.02368 4.14356 4.19989 4.32249 4.36992 4.39620 4.43050 4.55180 4.59357 4.64175 4.67826 4.81073 4.86786 4.90823 4.94683 5.02906 5.07137 5.16779 5.17295 5.24869 5.35342 5.36618 5.42036 5.42371 5.47331 5.50200 5.61844 5.65693 6.18978 6.55426 6.85419 7.02906 7.25925 7.66570 8.29044 9.17926 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.003147 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.271175 B = 8894.984207 C = 9435.120303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.106 4.106 7 H 0.125 0.875 8 C 0.515 3.485 9 O -0.587 6.587 10 N -0.702 5.702 11 C 0.156 3.844 12 H 0.070 0.930 13 C 0.132 3.868 14 N -0.619 5.619 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.984 3.016 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.284 1.284 23 C 0.133 3.867 24 C 0.094 3.906 25 H 0.090 0.910 26 O -0.568 6.568 27 C -0.098 4.098 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.416 0.584 39 H 0.041 0.959 40 H 0.010 0.990 41 H 0.251 0.749 42 H 0.092 0.908 43 H -0.010 1.010 44 H 0.397 0.603 45 H 0.064 0.936 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.300 15.000 -15.109 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.194 4.194 4 C -0.147 4.147 5 C -0.146 4.146 6 C -0.127 4.127 7 H 0.142 0.858 8 C 0.304 3.696 9 O -0.467 6.467 10 N -0.353 5.353 11 C 0.049 3.951 12 H 0.089 0.911 13 C 0.005 3.995 14 N -0.347 5.347 15 C -0.373 4.373 16 H 0.098 0.902 17 C -0.254 4.254 18 N -0.595 5.595 19 Si 0.812 3.188 20 H -0.194 1.194 21 H -0.220 1.220 22 H -0.211 1.211 23 C 0.007 3.993 24 C 0.033 3.967 25 H 0.107 0.893 26 O -0.375 6.375 27 C -0.136 4.136 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.008 0.992 44 H 0.248 0.752 45 H 0.083 0.917 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.141 15.056 -14.128 23.460 hybrid contribution 1.247 -0.908 0.828 1.750 sum -9.895 14.147 -13.300 21.793 Atomic orbital electron populations 1.21909 0.94196 1.01436 1.02079 1.21192 0.95767 0.95930 0.94023 1.21907 1.01237 0.94159 1.02066 1.22275 0.99661 0.96039 0.96675 1.22338 1.00933 0.98632 0.92717 1.22351 1.01201 0.93547 0.95641 0.85757 1.21352 0.79100 0.84413 0.84746 1.90680 1.50649 1.73446 1.31944 1.45822 1.30267 1.27394 1.31828 1.21500 0.97171 0.85916 0.90504 0.91149 1.21669 0.90256 0.92302 0.95234 1.44559 1.34224 1.19219 1.36672 1.19480 1.06027 1.03823 1.08014 0.90211 1.25644 1.01924 0.96073 1.01746 1.69966 1.40355 1.09507 1.39690 0.84926 0.78384 0.77425 0.78040 1.19374 1.21987 1.21089 1.22382 0.99393 0.89727 0.87821 1.23228 0.91233 0.89948 0.92259 0.89274 1.86387 1.37622 1.47657 1.65873 1.22350 0.95458 0.98145 0.97622 0.93019 0.93455 0.91276 0.93015 0.92071 0.91463 0.90914 0.89572 0.88811 0.92751 0.74699 0.94108 0.97150 0.93937 0.89031 0.99248 0.75235 0.91736 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.15 71.98 0.59 -1.44 16 2 C -0.07 -1.03 0.94 -51.46 -0.05 -1.08 16 3 C -0.14 -1.65 8.15 71.98 0.59 -1.06 16 4 C -0.11 -1.39 6.11 31.32 0.19 -1.20 16 5 C -0.11 -1.72 6.27 31.67 0.20 -1.52 16 6 C -0.11 -2.16 3.28 -10.25 -0.03 -2.20 16 7 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 8 C 0.52 15.67 7.14 87.66 0.63 16.30 16 9 O -0.59 -23.71 15.46 -3.04 -0.05 -23.75 16 10 N -0.70 -20.49 5.13 -436.92 -2.24 -22.73 16 11 C 0.16 5.97 2.97 46.18 0.14 6.11 16 12 H 0.07 3.13 7.69 -2.38 -0.02 3.11 16 13 C 0.13 5.95 6.99 86.73 0.61 6.56 16 14 N -0.62 -32.59 3.39 -691.98 -2.35 -34.94 16 15 C -0.24 -13.87 10.27 84.04 0.86 -13.01 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 18 N -0.95 -54.93 10.09 21.65 0.22 -54.71 16 19 Si 0.98 45.23 29.55 68.60 2.03 47.26 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 C 0.13 6.48 5.62 86.86 0.49 6.97 16 24 C 0.09 3.44 4.04 31.99 0.13 3.57 16 25 H 0.09 2.84 8.00 -2.39 -0.02 2.82 16 26 O -0.57 -18.63 13.47 -148.98 -2.01 -20.63 16 27 C -0.10 -2.08 4.97 31.67 0.16 -1.92 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 35 H 0.09 0.82 7.67 -2.39 -0.02 0.80 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.07 8.05 -2.39 -0.02 1.05 16 38 H 0.42 9.10 8.52 -92.71 -0.79 8.31 16 39 H 0.04 1.74 8.03 -2.39 -0.02 1.72 16 40 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.09 4.87 5.87 -2.39 -0.01 4.85 16 43 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 44 H 0.40 9.53 9.12 -74.06 -0.68 8.85 16 45 H 0.06 1.40 7.84 -2.39 -0.02 1.38 16 46 H 0.05 1.45 7.16 -2.39 -0.02 1.43 16 Total: -1.00 -72.48 361.99 0.06 -72.42 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.49 Total: 23.99 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 4.95 Total: 13.11 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -4.37 Total: -112.39 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -2.05 Total: -44.39 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.48 0.06 -72.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077626328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.782 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds