Wall clock time and date at job start Tue Mar 31 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.91694 * 2 1 4 4 C 1.55121 * 111.16103 * 236.06716 * 2 1 3 5 5 N 1.47419 * 104.94132 * 205.13033 * 4 2 1 6 6 C 1.36946 * 125.64759 * 204.04214 * 5 4 2 7 7 H 1.07991 * 119.99677 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99692 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00089 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99747 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47287 * 59.99578 * 10 8 6 12 12 H 1.48500 * 109.47111 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47192 * 299.99601 * 10 8 6 14 14 C 1.47025 * 108.70646 * 24.00879 * 5 4 2 15 15 C 1.54327 * 107.26645 * 358.93614 * 14 5 4 16 16 H 1.08998 * 110.71717 * 96.34981 * 15 14 5 17 17 N 1.46498 * 110.71777 * 219.44676 * 15 14 5 18 18 C 1.34777 * 119.99828 * 270.88040 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 H 1.09000 * 110.48541 * 42.70252 * 20 18 17 22 22 C 1.54098 * 110.54698 * 280.00684 * 20 18 17 23 23 N 1.47057 * 103.86184 * 241.40142 * 22 20 18 24 24 C 1.46500 * 125.41382 * 179.97438 * 23 22 20 25 25 C 1.33949 * 109.17784 * 359.97438 * 23 22 20 26 26 O 1.21583 * 123.04543 * 179.97438 * 25 23 22 27 27 N 1.33950 * 113.91476 * 0.02562 * 25 23 22 28 28 H 1.08996 * 109.47262 * 296.10014 * 1 2 3 29 29 H 1.08995 * 109.47140 * 56.09982 * 1 2 3 30 30 H 1.09003 * 109.47146 * 176.10280 * 1 2 3 31 31 H 1.08999 * 110.41595 * 86.20527 * 4 2 1 32 32 H 1.08992 * 110.30285 * 324.00254 * 4 2 1 33 33 H 0.97009 * 119.99762 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.87962 * 239.52593 * 14 5 4 35 35 H 1.08988 * 110.01242 * 118.42526 * 14 5 4 36 36 H 0.97001 * 120.00384 * 91.16487 * 17 15 14 37 37 H 1.08999 * 110.55272 * 359.97438 * 22 20 18 38 38 H 1.09004 * 110.55077 * 122.81172 * 22 20 18 39 39 H 1.09003 * 109.46708 * 89.99997 * 24 23 22 40 40 H 1.08995 * 109.46921 * 209.99765 * 24 23 22 41 41 H 1.08997 * 109.46940 * 329.99908 * 24 23 22 42 42 H 0.97000 * 125.40774 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0900 -0.8075 -1.2002 5 7 3.4298 -1.2474 -0.7704 6 6 4.4680 -1.5729 -1.6022 7 1 4.3396 -1.5175 -2.6730 8 6 5.6851 -1.9738 -1.0687 9 7 5.8416 -2.0407 0.2364 10 14 7.1010 -2.4184 -2.2032 11 1 7.4473 -1.2456 -3.0456 12 1 8.2813 -2.8102 -1.3916 13 1 6.7001 -3.5524 -3.0741 14 6 3.4672 -1.2781 0.6990 15 6 2.0861 -0.8079 1.2023 16 1 1.4451 -1.6613 1.4230 17 7 2.2287 0.0497 2.3815 18 6 2.2442 -0.4961 3.6137 19 8 2.1453 -1.6977 3.7460 20 6 2.3846 0.3865 4.8271 21 1 1.7616 1.2752 4.7265 22 6 3.8588 0.7808 5.0415 23 7 4.1855 0.2190 6.3607 24 6 5.4852 0.3215 7.0288 25 6 3.1058 -0.4013 6.8544 26 8 3.0970 -0.9568 7.9359 27 7 2.0370 -0.3552 6.0483 28 1 -0.3633 0.4521 0.9228 29 1 -0.3633 0.5732 -0.8529 30 1 -0.3633 -1.0253 -0.0698 31 1 2.1642 -0.1734 -2.0837 32 1 1.4553 -1.6695 -1.4052 33 1 6.6924 -2.3206 0.6092 34 1 4.2434 -0.6056 1.0642 35 1 3.6624 -2.2927 1.0460 36 1 2.3077 1.0106 2.2757 37 1 4.4893 0.3379 4.2706 38 1 3.9674 1.8654 5.0500 39 1 5.5087 1.2228 7.6414 40 1 5.6381 -0.5524 7.6620 41 1 6.2758 0.3704 6.2799 42 1 1.1713 -0.7487 6.2397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080263573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:16 Heat of formation + Delta-G solvation = -45.247486 kcal Electronic energy + Delta-G solvation = -24771.175278 eV Core-core repulsion = 21172.468027 eV Total energy + Delta-G solvation = -3598.707250 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.40927 -40.67913 -39.09772 -37.37121 -35.65876 -35.09167 -34.29659 -32.15822 -30.83680 -29.32643 -28.10243 -27.30471 -25.56815 -24.56972 -22.40470 -21.65828 -21.51855 -21.06610 -18.92011 -18.82456 -18.60250 -17.59736 -17.16114 -16.88672 -16.57118 -15.97553 -15.60709 -15.56034 -15.17641 -14.96539 -14.70074 -14.47302 -14.43159 -14.03718 -13.77395 -13.47296 -13.32095 -13.28897 -13.04303 -12.91458 -12.83809 -12.56447 -12.24669 -12.01939 -11.84227 -11.64625 -11.54603 -11.43010 -11.28380 -10.73301 -10.41044 -10.00961 -9.59179 -8.91326 -7.84664 -5.21712 1.37924 1.45135 1.48538 1.54680 1.59753 1.87972 2.18618 2.49692 2.91175 3.28933 3.33914 3.49501 3.69118 3.80034 3.92706 4.07536 4.11639 4.15056 4.48686 4.51645 4.56167 4.65000 4.71693 4.76165 4.84632 4.91496 4.91871 5.10297 5.11111 5.23129 5.32618 5.45844 5.53763 5.60339 5.63990 5.80419 6.02634 6.17684 6.33199 6.59182 7.07725 7.26326 7.43354 7.77111 8.40071 9.24018 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.004572 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.702957 B = 6122.142485 C = 7592.009676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 H 0.101 0.899 4 C 0.130 3.870 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.087 0.913 8 C -0.066 4.066 9 N -0.951 5.951 10 Si 0.977 3.023 11 H -0.270 1.270 12 H -0.298 1.298 13 H -0.281 1.281 14 C 0.188 3.812 15 C 0.136 3.864 16 H 0.068 0.932 17 N -0.689 5.689 18 C 0.497 3.503 19 O -0.579 6.579 20 C 0.117 3.883 21 H 0.176 0.824 22 C 0.102 3.898 23 N -0.638 5.638 24 C 0.116 3.884 25 C 0.691 3.309 26 O -0.635 6.635 27 N -0.713 5.713 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.244 0.756 34 H 0.024 0.976 35 H -0.017 1.017 36 H 0.421 0.579 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 14.957 6.313 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 H 0.119 0.881 4 C 0.005 3.995 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.104 0.896 8 C -0.259 4.259 9 N -0.600 5.600 10 Si 0.805 3.195 11 H -0.196 1.196 12 H -0.225 1.225 13 H -0.207 1.207 14 C 0.062 3.938 15 C 0.030 3.970 16 H 0.087 0.913 17 N -0.341 5.341 18 C 0.282 3.718 19 O -0.458 6.458 20 C 0.007 3.993 21 H 0.193 0.807 22 C -0.021 4.021 23 N -0.376 5.376 24 C -0.025 4.025 25 C 0.391 3.609 26 O -0.517 6.517 27 N -0.373 5.373 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.001 0.999 36 H 0.259 0.741 37 H 0.091 0.909 38 H 0.165 0.835 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -8.482 13.799 7.009 17.649 hybrid contribution 0.894 -1.018 -0.561 1.466 sum -7.588 12.781 6.448 16.202 Atomic orbital electron populations 1.21660 0.91765 1.02018 1.03287 1.22567 0.97151 0.99138 0.92158 0.88127 1.21909 0.85194 0.95715 0.96722 1.44713 1.09541 1.79096 1.02097 1.19465 0.90187 1.37702 0.89853 0.89553 1.25655 1.00570 1.02315 0.97342 1.70209 1.24265 1.54566 1.10923 0.85174 0.78346 0.78384 0.77574 1.19566 1.22463 1.20675 1.21112 0.92942 0.96379 0.83389 1.22033 0.96278 0.93623 0.85096 0.91336 1.45645 1.72883 1.11385 1.04198 1.21445 0.75783 0.88918 0.85633 1.90762 1.50551 1.17645 1.86813 1.22126 0.99147 0.95467 0.82555 0.80744 1.22618 0.91955 1.02940 0.84594 1.47205 1.11940 1.58051 1.20441 1.21587 0.80530 1.02677 0.97753 1.16150 0.81962 0.79163 0.83579 1.90895 1.84632 1.52325 1.23851 1.44834 1.13999 1.60457 1.17978 0.90746 0.90446 0.93587 0.92635 0.96269 0.94712 0.95745 0.99893 0.74123 0.90887 0.83547 0.90176 0.92434 0.88926 0.72224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.32 71.98 0.67 -1.90 16 2 C -0.09 -2.48 3.27 -9.33 -0.03 -2.51 16 3 H 0.10 2.38 8.00 -2.39 -0.02 2.36 16 4 C 0.13 4.84 6.72 86.93 0.58 5.42 16 5 N -0.63 -31.43 3.40 -691.59 -2.35 -33.78 16 6 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 7 H 0.09 4.49 7.83 -2.92 -0.02 4.47 16 8 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 9 N -0.95 -57.83 10.31 21.65 0.22 -57.61 16 10 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 C 0.19 9.22 5.13 86.73 0.44 9.66 16 15 C 0.14 4.70 2.74 46.18 0.13 4.82 16 16 H 0.07 2.67 7.51 -2.39 -0.02 2.65 16 17 N -0.69 -17.23 5.12 -436.91 -2.24 -19.46 16 18 C 0.50 13.93 6.95 87.66 0.61 14.54 16 19 O -0.58 -23.65 16.24 -3.04 -0.05 -23.70 16 20 C 0.12 2.10 4.17 44.51 0.19 2.29 16 21 H 0.18 1.15 8.14 -2.39 -0.02 1.13 16 22 C 0.10 1.78 7.32 86.64 0.63 2.42 16 23 N -0.64 -15.38 3.36 -863.44 -2.90 -18.27 16 24 C 0.12 2.24 11.03 127.77 1.41 3.65 16 25 C 0.69 21.24 8.60 179.57 1.54 22.79 16 26 O -0.63 -24.99 17.53 -3.98 -0.07 -25.06 16 27 N -0.71 -17.46 5.60 -460.36 -2.58 -20.04 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.02 8.08 -2.39 -0.02 1.00 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.02 0.74 7.99 -2.39 -0.02 0.72 16 33 H 0.24 14.61 8.31 -92.70 -0.77 13.84 16 34 H 0.02 1.30 7.27 -2.39 -0.02 1.28 16 35 H -0.02 -1.05 7.51 -2.39 -0.02 -1.07 16 36 H 0.42 6.60 8.54 -92.71 -0.79 5.80 16 37 H 0.07 1.63 7.72 -2.39 -0.02 1.61 16 38 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.34 7.91 -2.39 -0.02 1.32 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 42 H 0.44 9.94 8.96 -92.71 -0.83 9.11 16 Total: -1.00 -88.45 346.07 -1.00 -89.45 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.58 Total: 15.53 kcal Atomic # 6 Polarization: 37.82 SS G_CDS: 7.51 Total: 45.33 kcal Atomic # 7 Polarization: -139.32 SS G_CDS: -9.84 Total: -149.16 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.12 Total: -48.77 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -88.45 -1.00 -89.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080263573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.203 kcal (2) G-P(sol) polarization free energy of solvation -88.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds