Wall clock time and date at job start Tue Mar 31 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.63555 * 2 1 4 4 C 1.54326 * 111.00285 * 236.92326 * 2 1 3 5 5 N 1.47029 * 107.26545 * 219.59886 * 4 2 1 6 6 C 1.36936 * 125.64927 * 178.85396 * 5 4 2 7 7 H 1.08000 * 119.99664 * 347.78467 * 6 5 4 8 8 C 1.38814 * 119.99940 * 167.78993 * 6 5 4 9 9 N 1.31611 * 119.99770 * 325.97326 * 8 6 5 10 10 Si 1.86803 * 119.99856 * 145.97398 * 8 6 5 11 11 H 1.48498 * 109.47176 * 59.99787 * 10 8 6 12 12 H 1.48504 * 109.47098 * 299.99679 * 10 8 6 13 13 H 1.48503 * 109.46709 * 179.97438 * 10 8 6 14 14 C 1.47428 * 108.69950 * 358.58471 * 5 4 2 15 15 C 1.54911 * 104.83117 * 24.35676 * 14 5 4 16 16 H 1.08994 * 111.00096 * 81.06545 * 15 14 5 17 17 N 1.46502 * 110.99873 * 204.91421 * 15 14 5 18 18 C 1.34776 * 120.00131 * 273.54080 * 17 15 14 19 19 O 1.21275 * 119.99946 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00197 * 180.02562 * 18 17 15 21 21 H 1.09006 * 110.49223 * 321.25652 * 20 18 17 22 22 C 1.54103 * 110.54522 * 84.10758 * 20 18 17 23 23 N 1.47060 * 103.86265 * 118.59778 * 22 20 18 24 24 C 1.46499 * 125.41422 * 180.02562 * 23 22 20 25 25 C 1.33956 * 109.17543 * 359.97438 * 23 22 20 26 26 O 1.21589 * 123.04147 * 179.97438 * 25 23 22 27 27 N 1.33950 * 113.91530 * 0.02562 * 25 23 22 28 28 H 1.08995 * 109.47289 * 296.85538 * 1 2 3 29 29 H 1.09002 * 109.47300 * 56.86472 * 1 2 3 30 30 H 1.09008 * 109.46628 * 176.85968 * 1 2 3 31 31 H 1.09001 * 109.99550 * 100.12320 * 4 2 1 32 32 H 1.09001 * 109.78084 * 338.95408 * 4 2 1 33 33 H 0.97001 * 120.00692 * 354.24878 * 9 8 6 34 34 H 1.09001 * 110.36401 * 143.19907 * 14 5 4 35 35 H 1.09004 * 110.36635 * 265.51575 * 14 5 4 36 36 H 0.97004 * 120.00000 * 93.54972 * 17 15 14 37 37 H 1.09001 * 110.55049 * 237.18910 * 22 20 18 38 38 H 1.08997 * 110.55023 * 0.02562 * 22 20 18 39 39 H 1.08998 * 109.47308 * 179.97438 * 24 23 22 40 40 H 1.09002 * 109.46737 * 299.97685 * 24 23 22 41 41 H 1.08999 * 109.47037 * 59.97328 * 24 23 22 42 42 H 0.97005 * 125.40707 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0200 0.0000 4 6 2.0831 -0.7863 -1.2072 5 7 3.2495 -1.5469 -0.7353 6 6 4.0127 -2.3916 -1.4963 7 1 3.6683 -2.6981 -2.4730 8 6 5.2288 -2.8540 -1.0125 9 7 5.9699 -2.0804 -0.2480 10 14 5.8134 -4.5744 -1.4463 11 1 5.9443 -4.6956 -2.9205 12 1 4.8288 -5.5708 -0.9532 13 1 7.1320 -4.8241 -0.8105 14 6 3.4652 -1.2445 0.6914 15 6 2.0789 -0.7933 1.2152 16 1 1.4470 -1.6528 1.4384 17 7 2.2175 0.0728 2.3886 18 6 2.3112 -0.4692 3.6190 19 8 2.2814 -1.6739 3.7547 20 6 2.4532 0.4218 4.8260 21 1 3.1045 1.2667 4.6022 22 6 1.0718 0.9111 5.3025 23 7 0.9585 0.3729 6.6664 24 6 -0.1868 0.5600 7.5605 25 6 2.0686 -0.3167 6.9609 26 8 2.2413 -0.8701 8.0297 27 7 2.9715 -0.3405 5.9717 28 1 -0.3633 0.4642 0.9168 29 1 -0.3634 0.5617 -0.8606 30 1 -0.3633 -1.0262 -0.0563 31 1 2.3848 -0.0960 -1.9951 32 1 1.3217 -1.4701 -1.5823 33 1 5.7080 -1.1597 -0.0907 34 1 3.7994 -2.1362 1.2219 35 1 4.1930 -0.4407 0.8030 36 1 2.2416 1.0365 2.2800 37 1 1.0357 2.0004 5.3169 38 1 0.2832 0.5092 4.6663 39 1 0.0031 0.0512 8.5056 40 1 -0.3343 1.6243 7.7440 41 1 -1.0813 0.1438 7.0971 42 1 3.8309 -0.7892 6.0059 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080263574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:18 Heat of formation + Delta-G solvation = -50.587063 kcal Electronic energy + Delta-G solvation = -24650.667065 eV Core-core repulsion = 21051.728273 eV Total energy + Delta-G solvation = -3598.938792 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.44937 -40.80700 -39.29841 -37.40292 -35.90184 -35.11045 -34.48254 -32.17697 -30.92981 -29.39488 -28.08781 -27.21109 -25.67004 -24.56711 -22.46695 -21.72922 -21.64131 -21.14456 -19.61944 -18.88535 -18.63995 -17.65036 -17.32008 -16.65469 -16.44951 -16.00624 -15.83331 -15.62089 -15.28798 -15.13129 -14.90344 -14.54516 -14.48620 -14.44672 -14.04460 -13.52303 -13.39543 -13.21002 -13.01696 -12.95651 -12.72089 -12.50725 -12.17437 -12.08915 -11.93931 -11.67878 -11.60047 -11.56700 -11.37185 -10.49175 -10.44018 -10.18058 -9.60170 -9.07167 -8.43691 -5.32167 1.27683 1.51567 1.60809 1.61166 1.78120 1.78981 2.12031 2.59237 2.88284 3.09975 3.25300 3.41463 3.51779 3.67470 3.87419 3.90096 3.97405 4.11934 4.32360 4.47664 4.49851 4.55691 4.56436 4.73222 4.81626 4.86490 4.94178 4.94490 4.98816 5.03199 5.06590 5.20600 5.37616 5.51218 5.61190 5.64537 5.94889 6.25754 6.31419 6.49993 6.84053 7.17079 7.39908 7.66232 8.24084 8.91088 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.018725 B = 0.004003 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.971688 B = 6993.221660 C = 8090.596590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 H 0.106 0.894 4 C 0.131 3.869 5 N -0.626 5.626 6 C -0.357 4.357 7 H 0.064 0.936 8 C -0.073 4.073 9 N -0.933 5.933 10 Si 1.103 2.897 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.150 3.850 15 C 0.149 3.851 16 H 0.072 0.928 17 N -0.689 5.689 18 C 0.498 3.502 19 O -0.577 6.577 20 C 0.110 3.890 21 H 0.163 0.837 22 C 0.110 3.890 23 N -0.636 5.636 24 C 0.113 3.887 25 C 0.691 3.309 26 O -0.637 6.637 27 N -0.721 5.721 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.254 0.746 34 H -0.002 1.002 35 H 0.012 0.988 36 H 0.423 0.577 37 H 0.148 0.852 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.303 15.719 8.610 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 H 0.124 0.876 4 C 0.006 3.994 5 N -0.353 5.353 6 C -0.485 4.485 7 H 0.081 0.919 8 C -0.270 4.270 9 N -0.574 5.574 10 Si 0.928 3.072 11 H -0.192 1.192 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.023 3.977 15 C 0.042 3.958 16 H 0.090 0.910 17 N -0.343 5.343 18 C 0.283 3.717 19 O -0.455 6.455 20 C 0.001 3.999 21 H 0.180 0.820 22 C -0.012 4.012 23 N -0.375 5.375 24 C -0.027 4.027 25 C 0.391 3.609 26 O -0.519 6.519 27 N -0.380 5.380 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.165 0.835 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -14.197 13.472 9.508 21.758 hybrid contribution -0.106 0.625 -0.641 0.902 sum -14.302 14.097 8.867 21.952 Atomic orbital electron populations 1.21713 0.91320 1.02026 1.03696 1.22366 0.97897 0.99163 0.91273 0.87582 1.21638 0.88661 0.93129 0.95972 1.44715 1.32589 1.52181 1.05825 1.19932 1.02128 1.23765 1.02666 0.91856 1.26942 0.92672 1.07671 0.99699 1.70912 1.36181 1.07379 1.42966 0.83026 0.75181 0.72325 0.76705 1.19241 1.21583 1.21743 1.21614 0.95227 0.96006 0.84893 1.21901 0.95138 0.93610 0.85134 0.90999 1.45612 1.73290 1.11042 1.04316 1.21508 0.75650 0.89077 0.85507 1.90784 1.50442 1.17708 1.86594 1.22175 0.99283 0.94213 0.84243 0.82020 1.22614 0.93630 1.02909 0.82080 1.47210 1.17814 1.55279 1.17211 1.21644 0.85034 1.03534 0.92520 1.16182 0.81691 0.79466 0.83521 1.90903 1.80834 1.53497 1.26626 1.44978 1.20897 1.58122 1.13991 0.89939 0.90440 0.93819 0.95538 0.95169 0.93567 0.98375 0.97019 0.73768 0.83460 0.88830 0.91712 0.88616 0.90498 0.72753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.17 71.98 0.66 -1.80 16 2 C -0.09 -2.32 3.15 -9.61 -0.03 -2.35 16 3 H 0.11 2.25 8.00 -2.39 -0.02 2.23 16 4 C 0.13 5.03 6.85 86.73 0.59 5.63 16 5 N -0.63 -32.00 3.33 -691.94 -2.30 -34.31 16 6 C -0.36 -20.77 9.97 84.03 0.84 -19.93 16 7 H 0.06 3.65 8.02 -2.91 -0.02 3.62 16 8 C -0.07 -4.31 4.95 84.86 0.42 -3.89 16 9 N -0.93 -58.65 12.87 21.65 0.28 -58.37 16 10 Si 1.10 53.39 30.03 68.60 2.06 55.45 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 14 C 0.15 7.10 5.03 86.86 0.44 7.53 16 15 C 0.15 4.92 2.76 46.38 0.13 5.05 16 16 H 0.07 2.76 7.64 -2.39 -0.02 2.74 16 17 N -0.69 -15.61 5.23 -435.98 -2.28 -17.89 16 18 C 0.50 13.10 6.93 87.66 0.61 13.71 16 19 O -0.58 -22.97 16.34 -3.02 -0.05 -23.02 16 20 C 0.11 1.83 4.17 44.51 0.19 2.02 16 21 H 0.16 1.28 8.14 -2.38 -0.02 1.26 16 22 C 0.11 1.19 7.32 86.65 0.63 1.82 16 23 N -0.64 -11.99 3.36 -863.41 -2.90 -14.89 16 24 C 0.11 1.48 11.22 127.77 1.43 2.91 16 25 C 0.69 19.71 8.60 179.57 1.55 21.26 16 26 O -0.64 -24.10 17.29 -4.00 -0.07 -24.17 16 27 N -0.72 -17.94 5.63 -460.34 -2.59 -20.53 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.97 8.08 -2.38 -0.02 0.95 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.03 1.16 7.78 -2.39 -0.02 1.14 16 33 H 0.25 16.06 6.45 -92.71 -0.60 15.46 16 34 H 0.00 -0.13 7.82 -2.39 -0.02 -0.15 16 35 H 0.01 0.59 7.03 -2.39 -0.02 0.58 16 36 H 0.42 5.32 8.52 -92.71 -0.79 4.54 16 37 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.09 0.94 7.72 -2.39 -0.02 0.93 16 39 H 0.06 1.15 7.52 -2.39 -0.02 1.13 16 40 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.43 11.24 8.96 -92.70 -0.83 10.41 16 Total: -1.00 -92.90 346.06 -0.80 -93.70 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.40 Total: 12.06 kcal Atomic # 6 Polarization: 24.51 SS G_CDS: 7.45 Total: 31.96 kcal Atomic # 7 Polarization: -136.20 SS G_CDS: -9.79 Total: -145.99 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -0.12 Total: -47.18 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 2.06 Total: 55.45 kcal Total: -92.90 -0.80 -93.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080263574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.112 kcal (2) G-P(sol) polarization free energy of solvation -92.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds