Wall clock time and date at job start Tue Mar 31 2020 03:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 112.85135 * 2 1 4 4 C 1.53777 * 113.61040 * 131.20055 * 2 1 3 5 5 C 1.53782 * 87.08440 * 89.11505 * 4 2 1 6 6 C 1.53003 * 113.61483 * 139.97969 * 5 4 2 7 7 C 1.50694 * 109.46970 * 176.53117 * 6 5 4 8 8 O 1.21279 * 120.00019 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99945 * 180.02562 * 7 6 5 10 10 C 1.46492 * 119.99855 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.89188 * 34.29962 * 10 9 7 12 12 C 1.54919 * 111.00515 * 270.41330 * 10 9 7 13 13 N 1.47466 * 104.81021 * 204.95152 * 12 10 9 14 14 C 1.36934 * 125.62760 * 204.04665 * 13 12 10 15 15 H 1.08005 * 120.00030 * 354.81090 * 14 13 12 16 16 C 1.38813 * 120.00383 * 174.80930 * 14 13 12 17 17 N 1.31625 * 119.99740 * 7.05135 * 16 14 13 18 18 Si 1.86792 * 120.00313 * 187.05522 * 16 14 13 19 19 H 1.48495 * 109.47444 * 94.98617 * 18 16 14 20 20 H 1.48501 * 109.47127 * 214.98578 * 18 16 14 21 21 H 1.48503 * 109.47192 * 334.98233 * 18 16 14 22 22 C 1.47024 * 108.72531 * 24.07299 * 13 12 10 23 23 C 1.54326 * 107.27133 * 358.97321 * 22 13 12 24 24 H 1.09000 * 110.71906 * 219.44872 * 23 22 13 25 25 O 1.42896 * 110.72228 * 96.17123 * 23 22 13 26 26 C 1.53776 * 87.16992 * 25.38985 * 5 4 2 27 27 H 1.08994 * 109.47272 * 288.80455 * 1 2 3 28 28 H 1.08999 * 109.46553 * 48.80207 * 1 2 3 29 29 H 1.09003 * 109.47212 * 168.79820 * 1 2 3 30 30 H 1.09000 * 109.47515 * 191.19091 * 3 2 1 31 31 H 1.08997 * 109.47261 * 311.20069 * 3 2 1 32 32 H 1.09004 * 109.46562 * 71.19644 * 3 2 1 33 33 H 1.09001 * 113.61610 * 334.56628 * 4 2 1 34 34 H 1.09002 * 113.69257 * 203.67755 * 4 2 1 35 35 H 1.08999 * 113.61561 * 270.79880 * 5 4 2 36 36 H 1.08998 * 109.47111 * 56.52965 * 6 5 4 37 37 H 1.08999 * 109.47037 * 296.53112 * 6 5 4 38 38 H 0.97001 * 119.99542 * 359.97438 * 9 7 6 39 39 H 1.08998 * 110.35988 * 323.75700 * 12 10 9 40 40 H 1.08993 * 110.36068 * 86.07735 * 12 10 9 41 41 H 0.96996 * 119.99662 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.87899 * 239.55617 * 22 13 12 43 43 H 1.08999 * 110.01384 * 118.46198 * 22 13 12 44 44 H 0.96701 * 113.99753 * 66.47484 * 25 23 22 45 45 H 1.08998 * 113.61517 * 89.16314 * 26 5 4 46 46 H 1.09000 * 113.61138 * 220.06131 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 2.0929 -2.0426 0.0019 6 6 3.3264 -2.9479 0.0028 7 6 3.1398 -4.0520 -1.0057 8 8 2.1205 -4.1095 -1.6604 9 7 4.1053 -4.9762 -1.1795 10 6 3.9237 -6.0499 -2.1595 11 1 3.3608 -5.6964 -3.0234 12 6 3.2372 -7.2799 -1.5147 13 7 3.6571 -8.4241 -2.3449 14 6 2.9806 -9.6078 -2.4724 15 1 2.1008 -9.7943 -1.8743 16 6 3.4255 -10.5683 -3.3705 17 7 4.5711 -10.4027 -3.9972 18 14 2.3984 -12.0955 -3.6898 19 1 1.5484 -11.8789 -4.8880 20 1 3.2957 -13.2557 -3.9226 21 1 1.5347 -12.3662 -2.5125 22 6 4.9222 -8.0840 -3.0122 23 6 5.2898 -6.6454 -2.5916 24 1 5.7029 -6.0909 -3.4342 25 8 6.2056 -6.6577 -1.4947 26 6 2.1449 -0.9318 -1.0602 27 1 -0.3633 0.3312 0.9728 28 1 -0.3632 0.6769 -0.7733 29 1 -0.3634 -1.0081 -0.1996 30 1 3.1943 1.3533 -0.1994 31 1 1.6415 2.0076 -0.7732 32 1 1.9600 1.8732 0.9729 33 1 1.4944 -1.1069 1.9155 34 1 3.1590 -0.6497 1.3507 35 1 1.1574 -2.6019 0.0033 36 1 3.4590 -3.3803 0.9945 37 1 4.2074 -2.3619 -0.2589 38 1 4.9204 -4.9304 -0.6556 39 1 3.5795 -7.4105 -0.4882 40 1 2.1534 -7.1674 -1.5428 41 1 4.8821 -11.0740 -4.6245 42 1 4.7956 -8.1331 -4.0938 43 1 5.7062 -8.7735 -2.6992 44 1 7.0750 -7.0207 -1.7124 45 1 3.1576 -0.6534 -1.3517 46 1 1.4924 -1.1134 -1.9143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083720988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:43 Heat of formation + Delta-G solvation = -52.866448 kcal Electronic energy + Delta-G solvation = -24432.415569 eV Core-core repulsion = 20936.918279 eV Total energy + Delta-G solvation = -3495.497290 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28856 -39.15644 -37.73692 -34.83261 -33.85834 -32.43226 -31.56879 -28.88077 -27.97347 -27.60985 -26.67036 -25.82391 -24.39131 -21.65813 -20.50987 -20.07049 -19.71516 -18.44517 -17.43867 -16.77715 -16.61342 -15.63698 -15.31618 -14.87388 -14.76893 -14.44893 -14.28057 -13.99057 -13.71442 -13.34196 -13.09542 -12.92000 -12.70382 -12.55041 -12.44834 -12.15435 -11.98687 -11.95741 -11.54307 -11.29093 -10.94772 -10.87500 -10.85147 -10.67834 -10.50158 -10.42490 -10.17038 -10.12619 -10.08860 -9.82358 -9.51422 -9.27972 -8.65121 -8.58182 -6.86320 -5.75667 -3.07191 2.93127 3.39982 3.43846 3.46634 3.48859 4.30927 4.43608 4.49609 4.52306 4.58314 4.68350 4.97159 5.14019 5.18875 5.31120 5.38107 5.38452 5.41001 5.46438 5.53759 5.55582 5.60840 5.66028 5.70901 5.74100 5.77586 5.79402 5.84558 5.89876 6.05312 6.06608 6.12125 6.24696 6.32807 6.47068 6.66516 6.70249 6.98090 7.33777 7.44957 7.73745 7.90529 8.07794 8.20521 8.57202 9.18306 9.78683 10.43869 11.37092 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028450 B = 0.002913 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.929659 B = 9610.591368 C =10240.547549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.129 4.129 5 C -0.091 4.091 6 C -0.131 4.131 7 C 0.508 3.492 8 O -0.543 6.543 9 N -0.711 5.711 10 C 0.139 3.861 11 H 0.102 0.898 12 C 0.132 3.868 13 N -0.601 5.601 14 C -0.224 4.224 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.925 5.925 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.060 0.940 25 O -0.567 6.567 26 C -0.123 4.123 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.405 0.595 39 H 0.024 0.976 40 H 0.044 0.956 41 H 0.252 0.748 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.379 0.621 45 H 0.077 0.923 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 20.796 8.361 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.191 4.191 4 C -0.166 4.166 5 C -0.110 4.110 6 C -0.171 4.171 7 C 0.294 3.706 8 O -0.420 6.420 9 N -0.363 5.363 10 C 0.033 3.967 11 H 0.120 0.880 12 C 0.005 3.995 13 N -0.328 5.328 14 C -0.352 4.352 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.573 5.573 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.028 3.972 23 C 0.008 3.992 24 H 0.078 0.922 25 O -0.374 6.374 26 C -0.161 4.161 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.241 0.759 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.226 0.774 45 H 0.095 0.905 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.376 20.807 8.073 22.321 hybrid contribution 0.507 -1.217 -0.313 1.355 sum 0.131 19.590 7.761 21.072 Atomic orbital electron populations 1.21599 0.93284 1.02246 1.01488 1.21798 0.95577 0.94256 0.97525 1.21720 1.00392 0.95627 1.01408 1.23133 1.00978 0.95944 0.96582 1.22259 0.98271 0.93817 0.96640 1.21676 1.00052 0.96106 0.99239 1.20693 0.83353 0.82654 0.83914 1.90692 1.27967 1.75484 1.47861 1.45837 1.20986 1.27623 1.41848 1.22302 0.95319 0.86834 0.92226 0.88031 1.21840 0.97252 0.86354 0.94092 1.44297 1.23356 1.12505 1.52625 1.19098 1.06976 0.91308 1.17854 0.90274 1.24814 0.97535 0.99009 0.99138 1.69931 1.19835 1.35731 1.31800 0.86070 0.79263 0.82135 0.78176 1.21550 1.21778 1.20590 1.21859 0.89353 0.88596 0.97377 1.23502 0.88848 0.98994 0.87883 0.92221 1.86247 1.26519 1.86471 1.38122 1.23131 1.00845 0.95201 0.96901 0.92616 0.92551 0.92072 0.92657 0.92789 0.92792 0.91526 0.90124 0.88243 0.88970 0.89202 0.75940 0.95784 0.93779 0.93736 0.92572 0.93138 0.77351 0.90462 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.07 37.16 0.34 -0.75 16 2 C -0.09 -0.79 1.39 -153.61 -0.21 -1.00 16 3 C -0.13 -0.99 9.20 37.15 0.34 -0.65 16 4 C -0.13 -1.08 6.79 -25.92 -0.18 -1.26 16 5 C -0.09 -0.97 2.76 -89.81 -0.25 -1.21 16 6 C -0.13 -1.38 5.52 -27.88 -0.15 -1.53 16 7 C 0.51 7.68 7.83 -10.99 -0.09 7.60 16 8 O -0.54 -10.34 15.48 5.56 0.09 -10.26 16 9 N -0.71 -10.92 5.18 -51.73 -0.27 -11.18 16 10 C 0.14 2.63 3.25 -65.78 -0.21 2.41 16 11 H 0.10 2.06 7.63 -51.93 -0.40 1.67 16 12 C 0.13 2.96 6.92 -2.50 -0.02 2.94 16 13 N -0.60 -15.71 3.40 -170.03 -0.58 -16.29 16 14 C -0.22 -6.39 10.26 -15.06 -0.15 -6.55 16 15 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 16 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 17 N -0.93 -26.99 10.36 55.49 0.57 -26.42 16 18 Si 0.91 22.38 29.56 -169.99 -5.02 17.35 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.15 3.64 5.15 -3.06 -0.02 3.62 16 23 C 0.07 1.23 4.20 -24.89 -0.10 1.12 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 O -0.57 -9.02 12.14 -35.23 -0.43 -9.45 16 26 C -0.12 -1.27 6.76 -25.83 -0.17 -1.44 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 7.34 -51.93 -0.38 0.19 16 30 H 0.05 0.39 7.96 -51.93 -0.41 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.10 1.26 7.25 -51.93 -0.38 0.88 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.41 5.45 7.57 -40.82 -0.31 5.14 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.06 1.46 7.30 -51.93 -0.38 1.09 16 43 H 0.05 1.30 7.54 -51.93 -0.39 0.91 16 44 H 0.38 4.65 9.12 45.56 0.42 5.07 16 45 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 46 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -32.64 364.88 -8.34 -40.99 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.23 Total: 6.82 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.98 Total: 2.94 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.27 Total: -53.89 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.34 Total: -19.71 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.64 -8.34 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083720988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.880 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds