Wall clock time and date at job start Tue Mar 31 2020 03:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 112.85135 * 2 1 4 4 C 1.53777 * 113.61040 * 131.20055 * 2 1 3 5 5 C 1.53782 * 87.08440 * 89.11505 * 4 2 1 6 6 C 1.53003 * 113.61483 * 139.97969 * 5 4 2 7 7 C 1.50694 * 109.46970 * 176.53117 * 6 5 4 8 8 O 1.21279 * 120.00019 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99945 * 180.02562 * 7 6 5 10 10 C 1.46492 * 119.99855 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.89188 * 34.29962 * 10 9 7 12 12 C 1.54919 * 111.00515 * 270.41330 * 10 9 7 13 13 N 1.47466 * 104.81021 * 204.95152 * 12 10 9 14 14 C 1.36934 * 125.62760 * 204.04665 * 13 12 10 15 15 H 1.08005 * 120.00030 * 354.81090 * 14 13 12 16 16 C 1.38813 * 120.00383 * 174.80930 * 14 13 12 17 17 N 1.31625 * 119.99740 * 7.05135 * 16 14 13 18 18 Si 1.86792 * 120.00313 * 187.05522 * 16 14 13 19 19 H 1.48495 * 109.47444 * 94.98617 * 18 16 14 20 20 H 1.48501 * 109.47127 * 214.98578 * 18 16 14 21 21 H 1.48503 * 109.47192 * 334.98233 * 18 16 14 22 22 C 1.47024 * 108.72531 * 24.07299 * 13 12 10 23 23 C 1.54326 * 107.27133 * 358.97321 * 22 13 12 24 24 H 1.09000 * 110.71906 * 219.44872 * 23 22 13 25 25 O 1.42896 * 110.72228 * 96.17123 * 23 22 13 26 26 C 1.53776 * 87.16992 * 25.38985 * 5 4 2 27 27 H 1.08994 * 109.47272 * 288.80455 * 1 2 3 28 28 H 1.08999 * 109.46553 * 48.80207 * 1 2 3 29 29 H 1.09003 * 109.47212 * 168.79820 * 1 2 3 30 30 H 1.09000 * 109.47515 * 191.19091 * 3 2 1 31 31 H 1.08997 * 109.47261 * 311.20069 * 3 2 1 32 32 H 1.09004 * 109.46562 * 71.19644 * 3 2 1 33 33 H 1.09001 * 113.61610 * 334.56628 * 4 2 1 34 34 H 1.09002 * 113.69257 * 203.67755 * 4 2 1 35 35 H 1.08999 * 113.61561 * 270.79880 * 5 4 2 36 36 H 1.08998 * 109.47111 * 56.52965 * 6 5 4 37 37 H 1.08999 * 109.47037 * 296.53112 * 6 5 4 38 38 H 0.97001 * 119.99542 * 359.97438 * 9 7 6 39 39 H 1.08998 * 110.35988 * 323.75700 * 12 10 9 40 40 H 1.08993 * 110.36068 * 86.07735 * 12 10 9 41 41 H 0.96996 * 119.99662 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.87899 * 239.55617 * 22 13 12 43 43 H 1.08999 * 110.01384 * 118.46198 * 22 13 12 44 44 H 0.96701 * 113.99753 * 66.47484 * 25 23 22 45 45 H 1.08998 * 113.61517 * 89.16314 * 26 5 4 46 46 H 1.09000 * 113.61138 * 220.06131 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 2.0929 -2.0426 0.0019 6 6 3.3264 -2.9479 0.0028 7 6 3.1398 -4.0520 -1.0057 8 8 2.1205 -4.1095 -1.6604 9 7 4.1053 -4.9762 -1.1795 10 6 3.9237 -6.0499 -2.1595 11 1 3.3608 -5.6964 -3.0234 12 6 3.2372 -7.2799 -1.5147 13 7 3.6571 -8.4241 -2.3449 14 6 2.9806 -9.6078 -2.4724 15 1 2.1008 -9.7943 -1.8743 16 6 3.4255 -10.5683 -3.3705 17 7 4.5711 -10.4027 -3.9972 18 14 2.3984 -12.0955 -3.6898 19 1 1.5484 -11.8789 -4.8880 20 1 3.2957 -13.2557 -3.9226 21 1 1.5347 -12.3662 -2.5125 22 6 4.9222 -8.0840 -3.0122 23 6 5.2898 -6.6454 -2.5916 24 1 5.7029 -6.0909 -3.4342 25 8 6.2056 -6.6577 -1.4947 26 6 2.1449 -0.9318 -1.0602 27 1 -0.3633 0.3312 0.9728 28 1 -0.3632 0.6769 -0.7733 29 1 -0.3634 -1.0081 -0.1996 30 1 3.1943 1.3533 -0.1994 31 1 1.6415 2.0076 -0.7732 32 1 1.9600 1.8732 0.9729 33 1 1.4944 -1.1069 1.9155 34 1 3.1590 -0.6497 1.3507 35 1 1.1574 -2.6019 0.0033 36 1 3.4590 -3.3803 0.9945 37 1 4.2074 -2.3619 -0.2589 38 1 4.9204 -4.9304 -0.6556 39 1 3.5795 -7.4105 -0.4882 40 1 2.1534 -7.1674 -1.5428 41 1 4.8821 -11.0740 -4.6245 42 1 4.7956 -8.1331 -4.0938 43 1 5.7062 -8.7735 -2.6992 44 1 7.0750 -7.0207 -1.7124 45 1 3.1576 -0.6534 -1.3517 46 1 1.4924 -1.1134 -1.9143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083720988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:43 Heat of formation + Delta-G solvation = -76.223233 kcal Electronic energy + Delta-G solvation = -24433.428395 eV Core-core repulsion = 20936.918279 eV Total energy + Delta-G solvation = -3496.510116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30216 -40.34344 -39.18563 -36.46776 -35.36746 -33.70696 -33.05838 -30.45023 -29.33093 -28.27803 -28.15055 -26.54796 -26.30345 -22.88273 -22.20886 -21.52527 -20.89569 -19.28760 -19.10023 -18.30630 -17.88463 -16.94531 -16.75078 -16.43246 -15.93582 -15.71419 -15.39170 -15.11590 -14.83566 -14.72615 -14.47941 -14.43068 -13.98842 -13.90173 -13.54083 -13.21661 -13.12318 -12.86025 -12.78948 -12.72780 -12.63811 -12.29382 -12.23263 -12.10764 -11.93430 -11.90687 -11.65277 -11.40554 -10.96220 -10.89129 -10.84135 -10.77043 -10.65046 -10.02262 -8.96797 -7.92204 -5.26820 1.43354 1.45872 1.54438 1.72629 2.18181 2.47865 3.17903 3.27683 3.55756 3.64575 3.70796 3.79167 3.81377 3.88670 3.95392 4.12463 4.26288 4.33960 4.46726 4.49029 4.63683 4.65922 4.73469 4.81475 4.81762 4.84190 4.92728 4.96029 5.04996 5.07160 5.08193 5.09001 5.22568 5.34047 5.35178 5.38306 5.43243 5.54159 5.62559 5.63783 5.72625 6.12502 6.69453 6.87577 7.04340 7.37776 7.68497 8.32763 9.18302 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028450 B = 0.002913 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.929659 B = 9610.591368 C =10240.547549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.099 4.099 6 C -0.120 4.120 7 C 0.504 3.496 8 O -0.587 6.587 9 N -0.700 5.700 10 C 0.151 3.849 11 H 0.086 0.914 12 C 0.133 3.867 13 N -0.622 5.622 14 C -0.248 4.248 15 H 0.075 0.925 16 C -0.060 4.060 17 N -0.946 5.946 18 Si 0.979 3.021 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.271 1.271 22 C 0.159 3.841 23 C 0.094 3.906 24 H 0.091 0.909 25 O -0.563 6.563 26 C -0.128 4.128 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.419 0.581 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.250 0.750 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.398 0.602 45 H 0.088 0.912 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 22.535 9.818 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.189 4.189 4 C -0.152 4.152 5 C -0.118 4.118 6 C -0.159 4.159 7 C 0.293 3.707 8 O -0.467 6.467 9 N -0.353 5.353 10 C 0.044 3.956 11 H 0.104 0.896 12 C 0.006 3.994 13 N -0.349 5.349 14 C -0.377 4.377 15 H 0.093 0.907 16 C -0.253 4.253 17 N -0.595 5.595 18 Si 0.807 3.193 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.196 1.196 22 C 0.033 3.967 23 C 0.033 3.967 24 H 0.108 0.892 25 O -0.371 6.371 26 C -0.166 4.166 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.257 0.743 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.249 0.751 45 H 0.107 0.893 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.831 22.574 9.568 24.532 hybrid contribution 0.119 -1.769 -0.750 1.925 sum 0.949 20.804 8.819 22.616 Atomic orbital electron populations 1.21611 0.93681 1.01269 1.02214 1.21802 0.95375 0.95041 0.96777 1.21701 1.00666 0.94496 1.02001 1.23096 1.02174 0.94077 0.95881 1.22226 0.97136 0.94195 0.98219 1.21736 1.01066 0.94522 0.98582 1.21603 0.82217 0.83042 0.83880 1.90686 1.29782 1.76552 1.49717 1.45711 1.21774 1.26562 1.41233 1.21858 0.95109 0.86467 0.92150 0.89637 1.21880 0.96492 0.87133 0.93881 1.44584 1.24321 1.12823 1.53206 1.19403 1.07325 0.92690 1.18303 0.90675 1.25634 0.98666 1.02000 0.99015 1.70122 1.20889 1.36474 1.31990 0.85056 0.77736 0.78439 0.78079 1.21343 1.21511 1.19579 1.21730 0.87763 0.91771 0.95432 1.23099 0.89104 0.95191 0.89289 0.89179 1.86207 1.27397 1.86377 1.37148 1.23182 1.01087 0.95974 0.96326 0.91437 0.92373 0.93834 0.91942 0.92892 0.91782 0.91114 0.88081 0.91140 0.86709 0.86172 0.74326 0.95782 0.95686 0.94053 0.95706 0.95682 0.75090 0.89306 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.07 71.98 0.65 -1.48 16 2 C -0.09 -1.39 1.39 -51.60 -0.07 -1.46 16 3 C -0.13 -1.59 9.20 71.98 0.66 -0.93 16 4 C -0.12 -1.62 6.79 31.12 0.21 -1.40 16 5 C -0.10 -1.97 2.76 -10.27 -0.03 -2.00 16 6 C -0.12 -2.20 5.52 29.85 0.16 -2.03 16 7 C 0.50 14.68 7.83 87.65 0.69 15.37 16 8 O -0.59 -22.77 15.48 -3.03 -0.05 -22.82 16 9 N -0.70 -20.28 5.18 -435.95 -2.26 -22.53 16 10 C 0.15 5.66 3.25 46.39 0.15 5.81 16 11 H 0.09 3.52 7.63 -2.39 -0.02 3.50 16 12 C 0.13 6.08 6.92 86.85 0.60 6.68 16 13 N -0.62 -33.41 3.40 -691.86 -2.35 -35.76 16 14 C -0.25 -14.54 10.26 84.03 0.86 -13.68 16 15 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 16 C -0.06 -3.46 5.48 84.86 0.46 -2.99 16 17 N -0.95 -56.43 10.36 21.65 0.22 -56.20 16 18 Si 0.98 46.61 29.56 68.60 2.03 48.64 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 C 0.16 7.65 5.15 86.73 0.45 8.09 16 23 C 0.09 3.27 4.20 31.79 0.13 3.40 16 24 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 25 O -0.56 -16.44 12.14 -148.98 -1.81 -18.25 16 26 C -0.13 -2.50 6.76 31.18 0.21 -2.29 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.85 7.34 -2.39 -0.02 0.83 16 30 H 0.06 0.68 7.96 -2.39 -0.02 0.66 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 34 H 0.10 1.05 8.06 -2.39 -0.02 1.03 16 35 H 0.07 1.82 7.25 -2.39 -0.02 1.81 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 1.55 7.87 -2.39 -0.02 1.54 16 38 H 0.42 9.95 7.57 -92.71 -0.70 9.25 16 39 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.02 1.34 7.30 -2.39 -0.02 1.32 16 43 H 0.03 1.32 7.54 -2.39 -0.02 1.30 16 44 H 0.40 8.64 9.12 -74.06 -0.68 7.97 16 45 H 0.09 1.50 7.75 -2.39 -0.02 1.48 16 46 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -73.42 364.88 0.53 -72.89 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.41 Total: 22.95 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 5.15 Total: 11.09 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -4.38 Total: -114.49 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.85 Total: -41.07 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.42 0.53 -72.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083720988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.332 kcal (2) G-P(sol) polarization free energy of solvation -73.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds