Wall clock time and date at job start Tue Mar 31 2020 03:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 110.01842 * 2 1 4 4 C 1.54263 * 110.03268 * 121.39718 * 2 1 3 5 5 C 1.54890 * 104.19901 * 95.66988 * 4 2 1 6 6 C 1.54894 * 102.74585 * 37.94213 * 5 4 2 7 7 H 1.09002 * 110.48262 * 80.86785 * 6 5 4 8 8 C 1.50700 * 110.48495 * 203.37592 * 6 5 4 9 9 O 1.21284 * 119.99799 * 118.54979 * 8 6 5 10 10 N 1.34767 * 120.00147 * 298.54807 * 8 6 5 11 11 C 1.46506 * 120.00237 * 179.97438 * 10 8 6 12 12 H 1.09001 * 110.87862 * 31.12177 * 11 10 8 13 13 C 1.55130 * 111.19607 * 267.19147 * 11 10 8 14 14 N 1.47417 * 104.71869 * 279.19029 * 13 11 10 15 15 C 1.36943 * 125.64758 * 155.82057 * 14 13 11 16 16 H 1.07997 * 119.99801 * 4.91780 * 15 14 13 17 17 C 1.38809 * 119.99930 * 184.92067 * 15 14 13 18 18 N 1.31620 * 120.00198 * 352.94035 * 17 15 14 19 19 Si 1.86799 * 120.00043 * 172.66819 * 17 15 14 20 20 H 1.48499 * 109.47359 * 94.98551 * 19 17 15 21 21 H 1.48498 * 109.47250 * 214.98925 * 19 17 15 22 22 H 1.48501 * 109.46948 * 334.98580 * 19 17 15 23 23 C 1.47017 * 108.70515 * 335.55094 * 14 13 11 24 24 C 1.54323 * 107.27059 * 1.29004 * 23 14 13 25 25 H 1.09000 * 110.72067 * 263.64781 * 24 23 14 26 26 O 1.42900 * 110.72128 * 140.55940 * 24 23 14 27 27 C 1.53879 * 110.02694 * 238.56111 * 2 1 3 28 28 H 1.09004 * 109.47092 * 300.06267 * 1 2 3 29 29 H 1.09007 * 109.47151 * 60.05970 * 1 2 3 30 30 H 1.09003 * 109.47629 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47039 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47203 * 299.94244 * 3 2 1 33 33 H 1.09002 * 109.46521 * 59.93724 * 3 2 1 34 34 H 1.09004 * 110.48481 * 336.99289 * 4 2 1 35 35 H 1.08998 * 110.59903 * 214.40907 * 4 2 1 36 36 H 1.09001 * 110.75379 * 279.62936 * 5 4 2 37 37 H 1.09000 * 110.91544 * 156.32940 * 5 4 2 38 38 H 0.97004 * 120.00720 * 0.02562 * 10 8 6 39 39 H 1.09000 * 110.49872 * 160.34535 * 13 11 10 40 40 H 1.09001 * 110.34165 * 37.95112 * 13 11 10 41 41 H 0.97003 * 119.99739 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.88761 * 120.71020 * 23 14 13 43 43 H 1.09007 * 109.88311 * 241.72012 * 23 14 13 44 44 H 0.96699 * 114.00000 * 61.45227 * 26 24 23 45 45 H 1.09004 * 110.03360 * 121.43627 * 27 2 1 46 46 H 1.08994 * 110.03887 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0584 -0.7550 1.2371 5 6 2.3280 -2.1900 0.7199 6 6 2.8873 -1.9410 -0.7029 7 1 3.9445 -1.6793 -0.6567 8 6 2.6836 -3.1567 -1.5698 9 8 1.9996 -3.0815 -2.5686 10 7 3.2615 -4.3274 -1.2354 11 6 3.0630 -5.5094 -2.0779 12 1 2.9358 -5.2250 -3.1225 13 6 1.8604 -6.3552 -1.5832 14 7 2.3964 -7.1488 -0.4624 15 6 1.6615 -7.6748 0.5664 16 1 0.5850 -7.5888 0.5601 17 6 2.3002 -8.3184 1.6174 18 7 3.5952 -8.5463 1.5600 19 14 1.3231 -8.8543 3.1166 20 1 0.9161 -10.2739 2.9607 21 1 2.1636 -8.7109 4.3324 22 1 0.1129 -8.0039 3.2485 23 6 3.8498 -7.2875 -0.6356 24 6 4.2349 -6.5127 -1.9134 25 1 4.2936 -7.1851 -2.7693 26 8 5.4717 -5.8203 -1.7314 27 6 2.0570 -0.7541 -1.2335 28 1 -0.3633 0.5148 0.8895 29 1 -0.3634 0.5129 -0.8906 30 1 -0.3634 -1.0277 0.0005 31 1 3.1437 1.4272 0.0005 32 1 1.6962 1.9545 -0.8904 33 1 1.6944 1.9551 0.8895 34 1 1.3061 -0.7688 2.0257 35 1 2.9806 -0.3004 1.5989 36 1 1.4029 -2.7649 0.6762 37 1 3.0663 -2.6956 1.3423 38 1 3.8083 -4.3877 -0.4364 39 1 1.5036 -7.0120 -2.3766 40 1 1.0566 -5.7052 -1.2375 41 1 4.0416 -8.9958 2.2947 42 1 4.3678 -6.8642 0.2249 43 1 4.1113 -8.3401 -0.7446 44 1 6.2235 -6.3998 -1.5474 45 1 2.6867 -0.0962 -1.8325 46 1 1.2228 -1.1204 -1.8318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083757550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:12 Heat of formation + Delta-G solvation = -102.324141 kcal Electronic energy + Delta-G solvation = -25438.824780 eV Core-core repulsion = 21941.182843 eV Total energy + Delta-G solvation = -3497.641936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38494 -39.93765 -38.71867 -36.62094 -35.25643 -33.79842 -32.97406 -30.30376 -29.80261 -28.81175 -28.12221 -26.51926 -25.58222 -23.24179 -22.24822 -21.50062 -20.84507 -19.54639 -19.02590 -18.32802 -18.00077 -17.28233 -16.71750 -16.29394 -15.92472 -15.74019 -15.52118 -15.06571 -14.76170 -14.49684 -14.39103 -14.09414 -13.95619 -13.84493 -13.69104 -13.17288 -13.11067 -12.98840 -12.78470 -12.59997 -12.48889 -12.34895 -12.09709 -12.05447 -11.89274 -11.73775 -11.61695 -11.40715 -11.39267 -11.30706 -10.87993 -10.74967 -10.69149 -10.00589 -8.90811 -7.88805 -5.22448 1.45653 1.46537 1.55735 1.68497 2.26201 2.46780 3.15369 3.31896 3.52874 3.56171 3.59093 3.77493 3.86552 3.96173 4.15503 4.30527 4.33957 4.34341 4.43566 4.53192 4.57828 4.61866 4.65004 4.65505 4.83162 4.86314 4.90425 4.94728 4.98759 5.06482 5.14737 5.16871 5.22182 5.33805 5.38310 5.42567 5.47818 5.48827 5.58977 5.62032 5.69115 6.14997 6.64084 6.86310 7.07422 7.30020 7.71664 8.35613 9.21278 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.004714 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.468150 B = 5938.250067 C = 7044.864174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.134 4.134 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.106 4.106 7 H 0.119 0.881 8 C 0.515 3.485 9 O -0.587 6.587 10 N -0.689 5.689 11 C 0.146 3.854 12 H 0.099 0.901 13 C 0.124 3.876 14 N -0.615 5.615 15 C -0.244 4.244 16 H 0.075 0.925 17 C -0.053 4.053 18 N -0.943 5.943 19 Si 0.972 3.028 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.274 1.274 23 C 0.161 3.839 24 C 0.087 3.913 25 H 0.087 0.913 26 O -0.561 6.561 27 C -0.098 4.098 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.407 0.593 39 H 0.039 0.961 40 H 0.034 0.966 41 H 0.249 0.751 42 H 0.032 0.968 43 H 0.015 0.985 44 H 0.395 0.605 45 H 0.076 0.924 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 16.164 -2.701 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.191 4.191 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.127 4.127 7 H 0.137 0.863 8 C 0.304 3.696 9 O -0.469 6.469 10 N -0.338 5.338 11 C 0.039 3.961 12 H 0.117 0.883 13 C -0.003 4.003 14 N -0.343 5.343 15 C -0.373 4.373 16 H 0.093 0.907 17 C -0.246 4.246 18 N -0.591 5.591 19 Si 0.800 3.200 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.199 1.199 23 C 0.036 3.964 24 C 0.026 3.974 25 H 0.105 0.895 26 O -0.368 6.368 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.242 0.758 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.033 0.967 44 H 0.245 0.755 45 H 0.094 0.906 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.058 16.623 -3.335 16.987 hybrid contribution 0.008 -1.637 1.178 2.016 sum 1.066 14.986 -2.158 15.178 Atomic orbital electron populations 1.21908 0.94576 1.00939 1.02125 1.21183 0.95525 0.96118 0.94015 1.21876 1.01184 0.93879 1.02166 1.22473 1.01925 0.93107 0.96897 1.22438 1.00451 0.98598 0.93570 1.22179 1.03207 0.92233 0.95084 0.86304 1.21136 0.78024 0.85034 0.85444 1.90613 1.41186 1.85793 1.29260 1.45564 1.51254 1.08516 1.28452 1.22046 0.93941 0.84928 0.95178 0.88349 1.22118 0.95162 0.92553 0.90431 1.44506 1.03858 1.61017 1.24918 1.19330 0.90522 1.29848 0.97563 0.90732 1.25490 0.96965 1.01362 1.00832 1.70116 1.09070 1.47422 1.32521 0.85175 0.77699 0.77782 0.79334 1.21519 1.21673 1.19900 1.21656 0.84457 0.96502 0.93812 1.23222 0.84014 0.92613 0.97551 0.89499 1.86372 1.17935 1.38200 1.94332 1.22187 0.99250 0.94666 0.97524 0.91482 0.92507 0.94403 0.91887 0.92500 0.91746 0.90959 0.89568 0.93390 0.90563 0.75752 0.94338 0.94763 0.94208 0.95003 0.96661 0.75479 0.90559 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.14 71.98 0.59 -2.16 16 2 C -0.07 -1.31 0.94 -51.46 -0.05 -1.36 16 3 C -0.13 -1.97 8.16 71.98 0.59 -1.38 16 4 C -0.11 -2.05 5.90 31.67 0.19 -1.86 16 5 C -0.11 -2.81 6.26 31.89 0.20 -2.61 16 6 C -0.11 -2.72 3.25 -10.46 -0.03 -2.76 16 7 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 8 C 0.52 17.51 7.15 87.66 0.63 18.14 16 9 O -0.59 -23.59 15.10 -3.04 -0.05 -23.63 16 10 N -0.69 -24.02 4.75 -435.61 -2.07 -26.09 16 11 C 0.15 5.37 3.31 46.46 0.15 5.52 16 12 H 0.10 3.55 7.54 -2.39 -0.02 3.53 16 13 C 0.12 5.28 6.95 86.93 0.60 5.88 16 14 N -0.62 -30.64 3.39 -691.58 -2.35 -32.98 16 15 C -0.24 -13.43 10.26 84.03 0.86 -12.57 16 16 H 0.07 4.05 7.84 -2.91 -0.02 4.02 16 17 C -0.05 -2.90 5.48 84.86 0.46 -2.43 16 18 N -0.94 -53.74 10.36 21.65 0.22 -53.51 16 19 Si 0.97 44.74 29.56 68.60 2.03 46.76 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.16 7.35 5.15 86.73 0.45 7.80 16 24 C 0.09 3.02 4.12 31.78 0.13 3.15 16 25 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 26 O -0.56 -17.05 12.67 -148.98 -1.89 -18.94 16 27 C -0.10 -2.35 5.47 31.32 0.17 -2.18 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.34 7.84 -2.38 -0.02 1.32 16 35 H 0.09 1.37 7.86 -2.39 -0.02 1.35 16 36 H 0.05 1.44 8.05 -2.39 -0.02 1.42 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.41 14.08 8.38 -92.71 -0.78 13.30 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.03 1.61 7.21 -2.39 -0.02 1.60 16 43 H 0.02 0.78 7.60 -2.38 -0.02 0.76 16 44 H 0.40 9.03 9.11 -74.06 -0.67 8.35 16 45 H 0.08 1.63 7.67 -2.39 -0.02 1.61 16 46 H 0.06 1.72 6.43 -2.39 -0.02 1.71 16 Total: -1.00 -66.47 361.08 0.36 -66.11 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.48 Total: 31.11 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 4.94 Total: 11.17 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -4.19 Total: -112.58 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -1.93 Total: -42.58 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -66.47 0.36 -66.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083757550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.215 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds