Wall clock time and date at job start Tue Mar 31 2020 03:31:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86800 * 120.00194 * 2 1
4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1
5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1
6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1
7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1
9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1
10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2
11 11 H 1.09004 * 112.85025 * 334.94024 * 10 9 7
12 12 C 1.53777 * 113.61716 * 106.13991 * 10 9 7
13 13 C 1.54051 * 86.98700 * 89.15735 * 12 10 9
14 14 H 1.08993 * 113.61998 * 270.88788 * 13 12 10
15 15 C 1.53006 * 113.61750 * 139.97847 * 13 12 10
16 16 N 1.46500 * 109.46868 * 87.50744 * 15 13 12
17 17 C 1.34777 * 119.99768 * 179.97438 * 16 15 13
18 18 O 1.21282 * 120.00071 * 0.02562 * 17 16 15
19 19 C 1.50698 * 119.99620 * 180.02562 * 17 16 15
20 20 H 1.09000 * 109.54477 * 299.99943 * 19 17 16
21 21 C 1.54214 * 109.53687 * 179.83696 * 19 17 16
22 22 C 1.46281 * 111.98794 * 162.60705 * 21 19 17
23 23 C 1.54116 * 112.20285 * 61.41169 * 22 21 19
24 24 O 1.40320 * 108.71049 * 280.44154 * 23 22 21
25 25 C 1.43984 * 116.57794 * 95.04052 * 24 23 22
26 26 C 1.50621 * 109.53999 * 60.17005 * 19 17 16
27 27 C 1.53780 * 113.61505 * 203.74669 * 10 9 7
28 28 H 0.96998 * 120.00381 * 359.97438 * 1 2 3
29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2
30 30 H 1.08998 * 113.61893 * 203.66386 * 12 10 9
31 31 H 1.09002 * 113.61386 * 334.56623 * 12 10 9
32 32 H 1.08997 * 109.47115 * 207.50916 * 15 13 12
33 33 H 1.09005 * 109.47206 * 327.51091 * 15 13 12
34 34 H 0.97001 * 119.99725 * 0.02562 * 16 15 13
35 35 H 1.08996 * 108.97491 * 283.25108 * 21 19 17
36 36 H 1.09003 * 108.97523 * 42.04492 * 21 19 17
37 37 H 1.08993 * 108.93884 * 182.12015 * 22 21 19
38 38 H 1.09005 * 108.93690 * 300.80599 * 22 21 19
39 39 H 1.08996 * 109.59712 * 40.20859 * 23 22 21
40 40 H 1.09002 * 109.59736 * 160.67517 * 23 22 21
41 41 H 1.08997 * 108.69713 * 78.91250 * 25 24 23
42 42 H 1.09000 * 108.69585 * 197.01138 * 25 24 23
43 43 H 1.08996 * 108.88438 * 330.97217 * 26 19 17
44 44 H 1.09004 * 108.88774 * 89.42728 * 26 19 17
45 45 H 1.09001 * 113.61616 * 25.43376 * 27 10 9
46 46 H 1.09002 * 113.61769 * 156.25290 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4976 2.0466 -1.4000
5 1 1.4476 2.6526 0.7002
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 1.4702 -2.1375 -0.0005
9 7 3.3796 -1.2021 -0.0011
10 6 4.1120 -2.4708 0.0046
11 1 3.5358 -3.2904 0.4341
12 6 4.7587 -2.8149 -1.3475
13 6 5.9963 -2.0368 -0.8615
14 1 5.9665 -0.9743 -1.1024
15 6 7.3234 -2.6967 -1.2415
16 7 7.7331 -2.2390 -2.5715
17 6 8.8802 -2.6909 -3.1160
18 8 9.5731 -3.4768 -2.5050
19 6 9.3018 -2.2196 -4.4839
20 1 8.5397 -2.4915 -5.2142
21 6 10.6417 -2.8802 -4.8666
22 6 10.9021 -2.7980 -6.3037
23 6 11.0025 -1.3407 -6.7949
24 8 9.7058 -0.8265 -6.9466
25 6 9.1735 -0.0830 -5.8344
26 6 9.4752 -0.7235 -4.4700
27 6 5.5372 -2.3569 0.5709
28 1 -0.4850 0.8400 0.0004
29 1 3.8646 -0.3621 -0.0007
30 1 4.9398 -3.8807 -1.4864
31 1 4.2592 -2.3548 -2.2001
32 1 8.0865 -2.4242 -0.5125
33 1 7.2009 -3.7798 -1.2518
34 1 7.1790 -1.6102 -3.0600
35 1 11.4489 -2.3807 -4.3310
36 1 10.6167 -3.9293 -4.5715
37 1 11.8385 -3.3107 -6.5234
38 1 10.0930 -3.2953 -6.8388
39 1 11.5487 -0.7452 -6.0635
40 1 11.5213 -1.3129 -7.7532
41 1 9.5967 0.9213 -5.8509
42 1 8.0922 -0.0076 -5.9500
43 1 8.8047 -0.2976 -3.7237
44 1 10.5030 -0.4900 -4.1920
45 1 5.6657 -1.5273 1.2662
46 1 5.9303 -3.2974 0.9569
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001086353285.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:31:55
Heat of formation + Delta-G solvation = -61.933348 kcal
Electronic energy + Delta-G solvation = -24190.050862 eV
Core-core repulsion = 20694.160402 eV
Total energy + Delta-G solvation = -3495.890460 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.63855 -39.22397 -38.50675 -35.10458 -34.79775 -33.41292 -32.83561 -30.70217
-28.29731 -27.16488 -25.99740 -25.21573 -23.53211 -22.09718 -21.63494 -21.18277
-20.10066 -18.65669 -17.74092 -17.50324 -17.20442 -16.28779 -15.98682 -15.44486
-15.31438 -14.93471 -14.56489 -14.32172 -14.00713 -13.83705 -13.58557 -13.56049
-13.30927 -12.86997 -12.61911 -12.36202 -12.07290 -12.00507 -11.59261 -11.57660
-11.39517 -11.11264 -11.02578 -10.96183 -10.83349 -10.56227 -10.36355 -10.15578
-9.96311 -9.74884 -9.66069 -9.51675 -9.09902 -8.95208 -7.34758 -5.83667
-3.20111 2.51206 3.04789 3.30885 3.32963 3.39580 3.47181 4.18975
4.31665 4.45395 4.51861 4.57999 4.63219 4.84155 4.86705 4.89224
4.97514 5.06734 5.10523 5.12467 5.27842 5.34333 5.34945 5.40069
5.46616 5.53768 5.62738 5.65233 5.70669 5.73510 5.81826 5.88615
5.92421 5.99654 6.08499 6.18913 6.31122 6.44997 6.58198 6.69748
6.84829 7.00124 7.40319 7.94146 8.11295 8.35989 9.13595 9.85742
10.04911 11.34473
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.019486 B = 0.003048 C = 0.002762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1436.582939 B = 9182.722436 C =10136.479985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.006 3.994
3 Si 0.884 3.116
4 H -0.284 1.284
5 H -0.290 1.290
6 H -0.277 1.277
7 C -0.247 4.247
8 H 0.092 0.908
9 N -0.730 5.730
10 C 0.172 3.828
11 H 0.070 0.930
12 C -0.166 4.166
13 C -0.123 4.123
14 H 0.089 0.911
15 C 0.131 3.869
16 N -0.725 5.725
17 C 0.515 3.485
18 O -0.544 6.544
19 C -0.104 4.104
20 H 0.105 0.895
21 C -0.101 4.101
22 C -0.151 4.151
23 C 0.065 3.935
24 O -0.384 6.384
25 C 0.064 3.936
26 C -0.150 4.150
27 C -0.148 4.148
28 H 0.260 0.740
29 H 0.362 0.638
30 H 0.072 0.928
31 H 0.069 0.931
32 H 0.063 0.937
33 H 0.068 0.932
34 H 0.401 0.599
35 H 0.063 0.937
36 H 0.077 0.923
37 H 0.073 0.927
38 H 0.072 0.928
39 H 0.052 0.948
40 H 0.084 0.916
41 H 0.055 0.945
42 H 0.092 0.908
43 H 0.081 0.919
44 H 0.072 0.928
45 H 0.067 0.933
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.154 -2.516 -11.434 25.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.190 4.190
3 Si 0.714 3.286
4 H -0.210 1.210
5 H -0.216 1.216
6 H -0.204 1.204
7 C -0.377 4.377
8 H 0.110 0.890
9 N -0.370 5.370
10 C 0.061 3.939
11 H 0.088 0.912
12 C -0.207 4.207
13 C -0.142 4.142
14 H 0.107 0.893
15 C 0.007 3.993
16 N -0.376 5.376
17 C 0.301 3.699
18 O -0.421 6.421
19 C -0.126 4.126
20 H 0.123 0.877
21 C -0.139 4.139
22 C -0.188 4.188
23 C -0.013 4.013
24 O -0.302 6.302
25 C -0.012 4.012
26 C -0.188 4.188
27 C -0.188 4.188
28 H 0.070 0.930
29 H 0.195 0.805
30 H 0.091 0.909
31 H 0.087 0.913
32 H 0.081 0.919
33 H 0.086 0.914
34 H 0.236 0.764
35 H 0.082 0.918
36 H 0.096 0.904
37 H 0.091 0.909
38 H 0.091 0.909
39 H 0.070 0.930
40 H 0.102 0.898
41 H 0.073 0.927
42 H 0.110 0.890
43 H 0.100 0.900
44 H 0.091 0.909
45 H 0.085 0.915
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 23.255 -3.157 -11.109 25.965
hybrid contribution 0.436 1.634 0.065 1.692
sum 23.691 -1.523 -11.044 26.183
Atomic orbital electron populations
1.69692 1.05103 1.25924 1.57166 1.24683 0.95250 0.97218 1.01884
0.86563 0.79231 0.85038 0.77767 1.21039 1.21626 1.20360 1.19111
0.80398 0.94849 1.43327 0.89023 1.42513 1.03958 1.01587 1.88979
1.21000 0.90054 0.89855 0.93014 0.91177 1.23898 0.96347 0.98748
1.01692 1.22800 0.92815 0.99985 0.98609 0.89271 1.21468 0.95910
0.99073 0.82802 1.46095 1.23676 1.48022 1.19853 1.20586 0.80713
0.80857 0.87711 1.90684 1.53431 1.34716 1.63272 1.21071 1.00407
0.96086 0.94987 0.87727 1.20423 0.95013 1.02422 0.96006 1.21160
1.02942 0.98094 0.96654 1.22391 0.84639 0.93192 1.01048 1.87479
1.31391 1.72177 1.39183 1.22940 0.99738 0.93676 0.84893 1.21976
1.03764 0.94284 0.98767 1.23444 0.98818 1.01641 0.94891 0.92952
0.80542 0.90946 0.91251 0.91864 0.91414 0.76415 0.91820 0.90430
0.90886 0.90922 0.92973 0.89808 0.92673 0.88978 0.90002 0.90935
0.91463 0.89980
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.78 13.97 55.49 0.78 -28.00 16
2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16
3 Si 0.88 21.46 27.73 -169.99 -4.71 16.74 16
4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16
7 C -0.25 -6.79 10.45 -15.06 -0.16 -6.95 16
8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16
9 N -0.73 -16.56 5.11 -52.64 -0.27 -16.83 16
10 C 0.17 3.14 4.55 -67.12 -0.31 2.83 16
11 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16
12 C -0.17 -2.55 7.45 -25.78 -0.19 -2.74 16
13 C -0.12 -1.65 3.65 -89.66 -0.33 -1.98 16
14 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16
15 C 0.13 1.60 5.51 -4.04 -0.02 1.57 16
16 N -0.73 -7.93 5.18 -60.29 -0.31 -8.25 16
17 C 0.52 6.13 7.07 -10.99 -0.08 6.05 16
18 O -0.54 -8.47 15.64 5.56 0.09 -8.38 16
19 C -0.10 -0.93 2.22 -92.33 -0.21 -1.14 16
20 H 0.10 0.91 7.83 -51.93 -0.41 0.50 16
21 C -0.10 -0.89 4.30 -29.29 -0.13 -1.01 16
22 C -0.15 -1.09 5.47 -29.34 -0.16 -1.25 16
23 C 0.06 0.45 6.38 37.74 0.24 0.69 16
24 O -0.38 -3.39 10.17 -33.68 -0.34 -3.73 16
25 C 0.06 0.46 6.66 37.53 0.25 0.71 16
26 C -0.15 -1.10 4.80 -27.55 -0.13 -1.24 16
27 C -0.15 -2.16 7.38 -25.92 -0.19 -2.35 16
28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
29 H 0.36 8.02 5.76 -40.82 -0.24 7.78 16
30 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16
31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16
34 H 0.40 3.69 7.94 -40.82 -0.32 3.37 16
35 H 0.06 0.56 7.60 -51.93 -0.39 0.17 16
36 H 0.08 0.80 7.42 -51.93 -0.39 0.42 16
37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
38 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16
39 H 0.05 0.33 6.98 -51.93 -0.36 -0.03 16
40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
43 H 0.08 0.57 6.96 -51.93 -0.36 0.21 16
44 H 0.07 0.53 6.85 -51.93 -0.36 0.17 16
45 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
46 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16
LS Contribution 358.89 15.07 5.41 5.41
Total: -1.00 -32.52 358.89 -8.75 -41.27
By element:
Atomic # 1 Polarization: 16.38 SS G_CDS: -7.88 Total: 8.50 kcal
Atomic # 6 Polarization: -5.23 SS G_CDS: -1.50 Total: -6.73 kcal
Atomic # 7 Polarization: -53.28 SS G_CDS: 0.19 Total: -53.08 kcal
Atomic # 8 Polarization: -11.86 SS G_CDS: -0.26 Total: -12.11 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.74 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -32.52 -8.75 -41.27 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086353285.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.662 kcal
(2) G-P(sol) polarization free energy of solvation -32.520 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.182 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds