Wall clock time and date at job start Tue Mar 31 2020 03:31:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86800 * 120.00194 * 2 1
4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1
5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1
6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1
7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1
9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1
10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2
11 11 H 1.09004 * 112.85025 * 334.94024 * 10 9 7
12 12 C 1.53777 * 113.61716 * 106.13991 * 10 9 7
13 13 C 1.54051 * 86.98700 * 89.15735 * 12 10 9
14 14 H 1.08993 * 113.61998 * 270.88788 * 13 12 10
15 15 C 1.53006 * 113.61750 * 139.97847 * 13 12 10
16 16 N 1.46500 * 109.46868 * 87.50744 * 15 13 12
17 17 C 1.34777 * 119.99768 * 179.97438 * 16 15 13
18 18 O 1.21282 * 120.00071 * 0.02562 * 17 16 15
19 19 C 1.50698 * 119.99620 * 180.02562 * 17 16 15
20 20 H 1.09000 * 109.54477 * 299.99943 * 19 17 16
21 21 C 1.54214 * 109.53687 * 179.83696 * 19 17 16
22 22 C 1.46281 * 111.98794 * 162.60705 * 21 19 17
23 23 C 1.54116 * 112.20285 * 61.41169 * 22 21 19
24 24 O 1.40320 * 108.71049 * 280.44154 * 23 22 21
25 25 C 1.43984 * 116.57794 * 95.04052 * 24 23 22
26 26 C 1.50621 * 109.53999 * 60.17005 * 19 17 16
27 27 C 1.53780 * 113.61505 * 203.74669 * 10 9 7
28 28 H 0.96998 * 120.00381 * 359.97438 * 1 2 3
29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2
30 30 H 1.08998 * 113.61893 * 203.66386 * 12 10 9
31 31 H 1.09002 * 113.61386 * 334.56623 * 12 10 9
32 32 H 1.08997 * 109.47115 * 207.50916 * 15 13 12
33 33 H 1.09005 * 109.47206 * 327.51091 * 15 13 12
34 34 H 0.97001 * 119.99725 * 0.02562 * 16 15 13
35 35 H 1.08996 * 108.97491 * 283.25108 * 21 19 17
36 36 H 1.09003 * 108.97523 * 42.04492 * 21 19 17
37 37 H 1.08993 * 108.93884 * 182.12015 * 22 21 19
38 38 H 1.09005 * 108.93690 * 300.80599 * 22 21 19
39 39 H 1.08996 * 109.59712 * 40.20859 * 23 22 21
40 40 H 1.09002 * 109.59736 * 160.67517 * 23 22 21
41 41 H 1.08997 * 108.69713 * 78.91250 * 25 24 23
42 42 H 1.09000 * 108.69585 * 197.01138 * 25 24 23
43 43 H 1.08996 * 108.88438 * 330.97217 * 26 19 17
44 44 H 1.09004 * 108.88774 * 89.42728 * 26 19 17
45 45 H 1.09001 * 113.61616 * 25.43376 * 27 10 9
46 46 H 1.09002 * 113.61769 * 156.25290 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4976 2.0466 -1.4000
5 1 1.4476 2.6526 0.7002
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 1.4702 -2.1375 -0.0005
9 7 3.3796 -1.2021 -0.0011
10 6 4.1120 -2.4708 0.0046
11 1 3.5358 -3.2904 0.4341
12 6 4.7587 -2.8149 -1.3475
13 6 5.9963 -2.0368 -0.8615
14 1 5.9665 -0.9743 -1.1024
15 6 7.3234 -2.6967 -1.2415
16 7 7.7331 -2.2390 -2.5715
17 6 8.8802 -2.6909 -3.1160
18 8 9.5731 -3.4768 -2.5050
19 6 9.3018 -2.2196 -4.4839
20 1 8.5397 -2.4915 -5.2142
21 6 10.6417 -2.8802 -4.8666
22 6 10.9021 -2.7980 -6.3037
23 6 11.0025 -1.3407 -6.7949
24 8 9.7058 -0.8265 -6.9466
25 6 9.1735 -0.0830 -5.8344
26 6 9.4752 -0.7235 -4.4700
27 6 5.5372 -2.3569 0.5709
28 1 -0.4850 0.8400 0.0004
29 1 3.8646 -0.3621 -0.0007
30 1 4.9398 -3.8807 -1.4864
31 1 4.2592 -2.3548 -2.2001
32 1 8.0865 -2.4242 -0.5125
33 1 7.2009 -3.7798 -1.2518
34 1 7.1790 -1.6102 -3.0600
35 1 11.4489 -2.3807 -4.3310
36 1 10.6167 -3.9293 -4.5715
37 1 11.8385 -3.3107 -6.5234
38 1 10.0930 -3.2953 -6.8388
39 1 11.5487 -0.7452 -6.0635
40 1 11.5213 -1.3129 -7.7532
41 1 9.5967 0.9213 -5.8509
42 1 8.0922 -0.0076 -5.9500
43 1 8.8047 -0.2976 -3.7237
44 1 10.5030 -0.4900 -4.1920
45 1 5.6657 -1.5273 1.2662
46 1 5.9303 -3.2974 0.9569
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086353285.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:31:54
Heat of formation + Delta-G solvation = -84.284314 kcal
Electronic energy + Delta-G solvation = -24191.020073 eV
Core-core repulsion = 20694.160402 eV
Total energy + Delta-G solvation = -3496.859671 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.46919 -40.27312 -39.48877 -36.14862 -35.70263 -35.02731 -33.58183 -32.60123
-29.31889 -27.94347 -26.72293 -26.46638 -25.32676 -23.31545 -22.54012 -21.77592
-20.99062 -20.08932 -19.56344 -18.39316 -17.81405 -17.23999 -16.85339 -16.52263
-16.29347 -16.05180 -15.98118 -15.26068 -15.23319 -14.81703 -14.67470 -14.64503
-14.40013 -14.05148 -13.91649 -13.38417 -13.18906 -13.05561 -12.97631 -12.67362
-12.58998 -12.24672 -12.17182 -11.90533 -11.76374 -11.68102 -11.63503 -11.52137
-11.37917 -11.04936 -10.91662 -10.73744 -10.33224 -10.06668 -9.30002 -8.02677
-5.36692 1.37588 1.41871 1.49331 1.59330 2.16821 2.48386 2.93948
3.27703 3.50572 3.55207 3.59911 3.71831 3.78744 3.85618 4.00316
4.01898 4.05152 4.26180 4.30366 4.36652 4.37147 4.52446 4.59499
4.66358 4.69992 4.77822 4.81183 4.91969 4.95874 4.96703 5.03289
5.07851 5.08881 5.16947 5.23572 5.27732 5.32179 5.37556 5.49823
5.54267 5.80617 6.22521 6.47277 6.52745 7.07803 7.21195 7.84309
8.03310 9.18908
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.019486 B = 0.003048 C = 0.002762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1436.582939 B = 9182.722436 C =10136.479985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.985 5.985
2 C -0.066 4.066
3 Si 0.957 3.043
4 H -0.275 1.275
5 H -0.298 1.298
6 H -0.250 1.250
7 C -0.233 4.233
8 H 0.055 0.945
9 N -0.733 5.733
10 C 0.145 3.855
11 H 0.055 0.945
12 C -0.155 4.155
13 C -0.104 4.104
14 H 0.093 0.907
15 C 0.138 3.862
16 N -0.718 5.718
17 C 0.515 3.485
18 O -0.583 6.583
19 C -0.098 4.098
20 H 0.109 0.891
21 C -0.097 4.097
22 C -0.147 4.147
23 C 0.062 3.938
24 O -0.402 6.402
25 C 0.063 3.937
26 C -0.144 4.144
27 C -0.133 4.133
28 H 0.258 0.742
29 H 0.367 0.633
30 H 0.088 0.912
31 H 0.054 0.946
32 H 0.065 0.935
33 H 0.063 0.937
34 H 0.412 0.588
35 H 0.062 0.938
36 H 0.057 0.943
37 H 0.085 0.915
38 H 0.065 0.935
39 H 0.060 0.940
40 H 0.096 0.904
41 H 0.067 0.933
42 H 0.097 0.903
43 H 0.088 0.912
44 H 0.075 0.925
45 H 0.067 0.933
46 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.838 -1.394 -12.102 28.566
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.635 5.635
2 C -0.257 4.257
3 Si 0.784 3.216
4 H -0.201 1.201
5 H -0.225 1.225
6 H -0.174 1.174
7 C -0.364 4.364
8 H 0.073 0.927
9 N -0.375 5.375
10 C 0.036 3.964
11 H 0.073 0.927
12 C -0.195 4.195
13 C -0.122 4.122
14 H 0.111 0.889
15 C 0.015 3.985
16 N -0.370 5.370
17 C 0.302 3.698
18 O -0.463 6.463
19 C -0.119 4.119
20 H 0.127 0.873
21 C -0.135 4.135
22 C -0.184 4.184
23 C -0.015 4.015
24 O -0.322 6.322
25 C -0.013 4.013
26 C -0.182 4.182
27 C -0.172 4.172
28 H 0.067 0.933
29 H 0.201 0.799
30 H 0.107 0.893
31 H 0.072 0.928
32 H 0.083 0.917
33 H 0.081 0.919
34 H 0.248 0.752
35 H 0.081 0.919
36 H 0.076 0.924
37 H 0.104 0.896
38 H 0.083 0.917
39 H 0.078 0.922
40 H 0.114 0.886
41 H 0.085 0.915
42 H 0.115 0.885
43 H 0.107 0.893
44 H 0.093 0.907
45 H 0.086 0.914
46 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 25.988 -2.058 -11.792 28.613
hybrid contribution -0.427 1.123 0.286 1.235
sum 25.561 -0.935 -11.507 28.047
Atomic orbital electron populations
1.69888 1.07270 1.26750 1.59630 1.25545 0.96137 1.01432 1.02620
0.85379 0.78628 0.79338 0.78247 1.20055 1.22523 1.17448 1.19054
0.82625 0.93423 1.41303 0.92709 1.42420 1.02222 1.03488 1.89387
1.21336 0.91595 0.87782 0.95729 0.92724 1.23749 0.96647 1.00044
0.99090 1.22622 0.92420 0.99891 0.97296 0.88920 1.21296 0.95105
0.98642 0.83485 1.46033 1.23570 1.47879 1.19468 1.21057 0.80290
0.80058 0.88380 1.90670 1.54647 1.36526 1.64492 1.21058 1.00489
0.97270 0.93088 0.87319 1.20398 0.94967 1.01124 0.97031 1.21118
1.03315 0.98656 0.95341 1.22492 0.84227 0.92759 1.01978 1.87458
1.32211 1.72483 1.40014 1.23021 1.00183 0.93950 0.84186 1.21938
1.04146 0.92846 0.99292 1.23343 0.95375 1.02942 0.95578 0.93327
0.79906 0.89308 0.92754 0.91678 0.91872 0.75179 0.91884 0.92399
0.89604 0.91674 0.92171 0.88600 0.91517 0.88450 0.89333 0.90677
0.91432 0.87677
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -62.61 13.97 21.65 0.30 -62.31 16
2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16
3 Si 0.96 43.99 27.73 68.60 1.90 45.90 16
4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16
5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16
6 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16
7 C -0.23 -13.03 10.45 84.03 0.88 -12.15 16
8 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16
9 N -0.73 -32.60 5.11 -320.45 -1.64 -34.24 16
10 C 0.14 5.12 4.55 45.52 0.21 5.33 16
11 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16
12 C -0.15 -4.47 7.45 31.21 0.23 -4.24 16
13 C -0.10 -2.47 3.65 -10.17 -0.04 -2.50 16
14 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
15 C 0.14 3.00 5.51 86.38 0.48 3.48 16
16 N -0.72 -13.96 5.18 -463.05 -2.40 -16.36 16
17 C 0.51 11.37 7.07 87.66 0.62 11.99 16
18 O -0.58 -17.59 15.64 -3.04 -0.05 -17.63 16
19 C -0.10 -1.59 2.22 -11.90 -0.03 -1.61 16
20 H 0.11 1.70 7.83 -2.39 -0.02 1.68 16
21 C -0.10 -1.60 4.30 28.94 0.12 -1.47 16
22 C -0.15 -1.88 5.47 28.90 0.16 -1.72 16
23 C 0.06 0.74 6.38 72.36 0.46 1.20 16
24 O -0.40 -6.24 10.17 -143.44 -1.46 -7.70 16
25 C 0.06 0.74 6.66 72.23 0.48 1.22 16
26 C -0.14 -1.77 4.80 30.07 0.14 -1.63 16
27 C -0.13 -3.51 7.38 31.12 0.23 -3.28 16
28 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16
29 H 0.37 15.42 5.76 -92.71 -0.53 14.88 16
30 H 0.09 2.29 7.90 -2.39 -0.02 2.27 16
31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16
32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16
33 H 0.06 1.47 7.85 -2.38 -0.02 1.46 16
34 H 0.41 6.39 7.94 -92.71 -0.74 5.65 16
35 H 0.06 1.03 7.60 -2.39 -0.02 1.01 16
36 H 0.06 1.18 7.42 -2.39 -0.02 1.16 16
37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
38 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16
39 H 0.06 0.61 6.98 -2.39 -0.02 0.59 16
40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16
41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
43 H 0.09 0.98 6.96 -2.39 -0.02 0.97 16
44 H 0.07 0.90 6.85 -2.39 -0.02 0.89 16
45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
46 H 0.10 2.32 8.10 -2.39 -0.02 2.30 16
Total: -1.00 -71.61 358.89 0.72 -70.89
By element:
Atomic # 1 Polarization: 30.56 SS G_CDS: -0.36 Total: 30.20 kcal
Atomic # 6 Polarization: -13.17 SS G_CDS: 4.42 Total: -8.75 kcal
Atomic # 7 Polarization: -109.17 SS G_CDS: -3.73 Total: -112.90 kcal
Atomic # 8 Polarization: -23.83 SS G_CDS: -1.51 Total: -25.34 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 1.90 Total: 45.90 kcal
Total: -71.61 0.72 -70.89 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086353285.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.396 kcal
(2) G-P(sol) polarization free energy of solvation -71.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.006 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.284 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds