Wall clock time and date at job start Tue Mar 31 2020 03:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00640 * 2 1 4 4 H 1.48495 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46779 * 300.00307 * 3 2 1 6 6 H 1.48504 * 109.47072 * 59.99699 * 3 2 1 7 7 C 1.38818 * 119.99342 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99898 * 197.37992 * 7 2 1 9 9 N 1.36935 * 120.00136 * 17.38100 * 7 2 1 10 10 C 1.46928 * 120.62677 * 207.68180 * 9 7 2 11 11 C 1.53191 * 108.77175 * 233.58222 * 10 9 7 12 12 C 1.53042 * 109.34324 * 305.34796 * 11 10 9 13 13 H 1.08999 * 109.46313 * 181.39809 * 12 11 10 14 14 N 1.46493 * 109.46014 * 301.36242 * 12 11 10 15 15 C 1.34774 * 120.00431 * 275.00010 * 14 12 11 16 16 O 1.21291 * 119.99418 * 359.97438 * 15 14 12 17 17 C 1.50692 * 120.00514 * 180.02562 * 15 14 12 18 18 C 1.52997 * 109.47426 * 179.97438 * 17 15 14 19 19 C 1.54270 * 110.03322 * 292.90771 * 18 17 15 20 20 C 1.54965 * 104.16342 * 217.13255 * 19 18 17 21 21 C 1.54897 * 102.77297 * 37.88619 * 20 19 18 22 22 C 1.53871 * 110.03774 * 175.69049 * 18 17 15 23 23 C 1.53111 * 109.50011 * 61.34972 * 12 11 10 24 24 H 1.08994 * 109.51392 * 58.63032 * 23 12 11 25 25 O 1.42892 * 109.48715 * 178.70409 * 23 12 11 26 26 C 1.46928 * 120.63227 * 27.65403 * 9 7 2 27 27 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.58889 * 113.79934 * 10 9 7 29 29 H 1.08996 * 109.58804 * 353.36829 * 10 9 7 30 30 H 1.08998 * 109.49729 * 65.32061 * 11 10 9 31 31 H 1.09005 * 109.49658 * 185.38085 * 11 10 9 32 32 H 0.97008 * 119.99995 * 94.99352 * 14 12 11 33 33 H 1.08993 * 109.47301 * 299.99619 * 17 15 14 34 34 H 1.09003 * 109.47442 * 59.99499 * 17 15 14 35 35 H 1.09003 * 110.01938 * 54.29661 * 18 17 15 36 36 H 1.08997 * 110.48746 * 335.78161 * 19 18 17 37 37 H 1.09003 * 110.48429 * 98.42506 * 19 18 17 38 38 H 1.09004 * 110.72047 * 279.57855 * 20 19 18 39 39 H 1.08997 * 110.92488 * 156.29359 * 20 19 18 40 40 H 1.09006 * 110.48404 * 203.40306 * 21 20 19 41 41 H 1.09006 * 110.59663 * 80.81965 * 21 20 19 42 42 H 1.09000 * 110.03833 * 238.57111 * 22 18 17 43 43 H 1.09008 * 110.03199 * 0.02562 * 22 18 17 44 44 H 0.96704 * 114.00198 * 179.85686 * 25 23 12 45 45 H 1.08996 * 109.58356 * 246.20564 * 26 9 7 46 46 H 1.08993 * 109.58512 * 6.62776 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0532 -1.2236 0.2799 9 7 1.3723 -2.3612 -0.3532 10 6 1.8190 -3.6547 0.1815 11 6 2.0740 -4.6102 -0.9884 12 6 0.8186 -4.6909 -1.8599 13 1 0.9894 -5.3894 -2.6791 14 7 -0.3093 -5.1564 -1.0491 15 6 -0.5082 -6.4767 -0.8661 16 8 0.2464 -7.2796 -1.3732 17 6 -1.6687 -6.9556 -0.0325 18 6 -1.6662 -8.4848 0.0145 19 6 -1.9734 -9.0571 -1.3849 20 6 -2.8462 -10.3056 -1.1008 21 6 -3.7280 -9.8441 0.0861 22 6 -2.7811 -8.9853 0.9495 23 6 0.5006 -3.3050 -2.4278 24 1 1.3489 -2.9472 -3.0111 25 8 -0.6540 -3.3866 -3.2656 26 6 0.2277 -2.3347 -1.2741 27 1 -0.4849 0.8401 -0.0004 28 1 1.0466 -4.0687 0.8297 29 1 2.7397 -3.5174 0.7485 30 1 2.9079 -4.2404 -1.5850 31 1 2.3137 -5.6013 -0.6031 32 1 -0.9129 -4.5142 -0.6438 33 1 -1.5768 -6.5606 0.9791 34 1 -2.6020 -6.6075 -0.4751 35 1 -0.6980 -8.8460 0.3612 36 1 -2.5278 -8.3318 -1.9804 37 1 -1.0512 -9.3425 -1.8911 38 1 -2.2244 -11.1535 -0.8132 39 1 -3.4616 -10.5552 -1.9651 40 1 -4.0860 -10.7040 0.6524 41 1 -4.5674 -9.2464 -0.2695 42 1 -2.3540 -9.5899 1.7496 43 1 -3.3242 -8.1387 1.3695 44 1 -0.9152 -2.5425 -3.6587 45 1 -0.6744 -2.6409 -0.7446 46 1 0.0985 -1.3265 -1.6675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090029392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:47 Heat of formation + Delta-G solvation = -88.042988 kcal Electronic energy + Delta-G solvation = -25218.260380 eV Core-core repulsion = 21721.237721 eV Total energy + Delta-G solvation = -3497.022659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95847 -38.48466 -37.28257 -35.29303 -34.01592 -32.14339 -31.33726 -29.57210 -28.86383 -28.68483 -25.99510 -25.05588 -22.37993 -21.82793 -20.86327 -20.59137 -19.44402 -18.67228 -17.23964 -16.84092 -16.54702 -15.70536 -15.44653 -14.98148 -14.91019 -14.78101 -14.05274 -13.78991 -13.57712 -13.43860 -13.35999 -13.02260 -12.76217 -12.27827 -11.94927 -11.83843 -11.67320 -11.26378 -11.12877 -11.06629 -11.04513 -10.97620 -10.86579 -10.76373 -10.63232 -10.42489 -10.41858 -10.21831 -10.01870 -9.65484 -9.40711 -9.29122 -8.65571 -8.50112 -6.80935 -5.91850 -3.34758 3.04052 3.29268 3.38321 3.40373 3.60408 4.38044 4.54459 4.58251 4.61211 4.70366 5.15265 5.18126 5.23689 5.32050 5.39624 5.41334 5.47940 5.58475 5.60360 5.64666 5.72694 5.78717 5.79321 5.83713 5.86103 5.93086 6.03139 6.03784 6.06051 6.24811 6.25761 6.33541 6.45635 6.47172 6.48828 6.70576 6.80804 7.00928 7.04784 7.38872 7.68722 7.97511 8.08651 8.31840 8.64919 9.06969 9.69900 10.25617 11.16238 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.003407 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.746594 B = 8215.615672 C = 8341.979173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.146 3.854 11 C -0.144 4.144 12 C 0.166 3.834 13 H 0.077 0.923 14 N -0.707 5.707 15 C 0.512 3.488 16 O -0.552 6.552 17 C -0.136 4.136 18 C -0.074 4.074 19 C -0.112 4.112 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.123 4.123 23 C 0.067 3.933 24 H 0.060 0.940 25 O -0.573 6.573 26 C 0.146 3.854 27 H 0.254 0.746 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.403 0.597 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.375 0.625 45 H 0.024 0.976 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 -13.835 -1.430 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.020 3.980 11 C -0.184 4.184 12 C 0.061 3.939 13 H 0.095 0.905 14 N -0.359 5.359 15 C 0.298 3.702 16 O -0.431 6.431 17 C -0.176 4.176 18 C -0.093 4.093 19 C -0.150 4.150 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.160 4.160 23 C 0.006 3.994 24 H 0.078 0.922 25 O -0.377 6.377 26 C 0.020 3.980 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.239 0.761 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.222 0.778 45 H 0.042 0.958 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.379 -14.872 -1.606 15.897 hybrid contribution 0.083 1.983 0.090 1.986 sum -5.296 -12.890 -1.516 14.018 Atomic orbital electron populations 1.70029 1.05252 1.25566 1.53830 1.25052 0.95331 0.98521 1.00723 0.86213 0.79446 0.83737 0.77329 1.20188 1.21515 1.21656 1.19253 0.92901 0.84666 1.41517 0.91375 1.43980 1.35689 1.01758 1.49817 1.20915 0.97837 0.86364 0.92904 1.22392 0.96591 1.00204 0.99245 1.20774 0.86063 0.94313 0.92777 0.90518 1.46037 1.30595 1.06916 1.52310 1.20596 0.86188 0.82375 0.81031 1.90638 1.47888 1.54178 1.50351 1.21844 0.97776 0.97130 1.00831 1.21499 0.99198 0.92773 0.95833 1.22389 0.99797 0.96418 0.96363 1.22543 0.97993 0.98153 0.97817 1.22354 0.97953 0.99116 0.96778 1.22245 0.96457 0.99443 0.97889 1.22950 0.87637 0.95953 0.92878 0.92202 1.86413 1.48255 1.36568 1.66501 1.21392 0.89457 0.98591 0.88595 0.93586 0.96207 0.92547 0.91300 0.91776 0.76088 0.89127 0.89137 0.90358 0.92089 0.90829 0.91770 0.91959 0.92085 0.91783 0.91847 0.91623 0.77809 0.95769 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 11.19 55.49 0.62 -24.08 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.63 9.59 -15.06 -0.14 -6.78 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -13.82 2.99 -172.32 -0.52 -14.34 16 10 C 0.15 2.97 6.26 -3.71 -0.02 2.94 16 11 C -0.14 -2.59 5.77 -26.61 -0.15 -2.75 16 12 C 0.17 2.98 2.47 -67.85 -0.17 2.81 16 13 H 0.08 1.46 7.57 -51.93 -0.39 1.06 16 14 N -0.71 -11.77 4.15 -53.74 -0.22 -12.00 16 15 C 0.51 8.17 7.57 -10.99 -0.08 8.09 16 16 O -0.55 -10.29 14.44 5.55 0.08 -10.21 16 17 C -0.14 -1.66 4.83 -27.89 -0.13 -1.79 16 18 C -0.07 -0.86 2.55 -89.50 -0.23 -1.09 16 19 C -0.11 -1.34 5.40 -25.03 -0.14 -1.47 16 20 C -0.13 -1.23 6.91 -24.69 -0.17 -1.40 16 21 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 22 C -0.12 -1.16 6.46 -25.62 -0.17 -1.33 16 23 C 0.07 1.23 3.36 -26.57 -0.09 1.14 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 O -0.57 -9.75 13.21 -35.23 -0.47 -10.22 16 26 C 0.15 3.19 4.64 -3.71 -0.02 3.17 16 27 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 29 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.40 6.69 6.87 -40.82 -0.28 6.41 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.00 8.02 -51.93 -0.42 0.59 16 35 H 0.08 1.02 7.95 -51.93 -0.41 0.60 16 36 H 0.06 0.75 7.77 -51.93 -0.40 0.35 16 37 H 0.07 1.01 7.63 -51.93 -0.40 0.61 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.58 7.67 -51.92 -0.40 0.18 16 44 H 0.38 5.12 9.08 45.56 0.41 5.53 16 45 H 0.02 0.55 6.64 -51.93 -0.34 0.21 16 46 H 0.09 2.25 6.04 -51.93 -0.31 1.93 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -29.52 354.83 -9.07 -38.59 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.11 Total: 10.86 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.77 Total: 0.25 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.12 Total: -50.41 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.39 Total: -20.43 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.52 -9.07 -38.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090029392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.457 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds