Wall clock time and date at job start Tue Mar 31 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00640 * 2 1 4 4 H 1.48495 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46779 * 300.00307 * 3 2 1 6 6 H 1.48504 * 109.47072 * 59.99699 * 3 2 1 7 7 C 1.38818 * 119.99342 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99898 * 197.37992 * 7 2 1 9 9 N 1.36935 * 120.00136 * 17.38100 * 7 2 1 10 10 C 1.46928 * 120.62677 * 207.68180 * 9 7 2 11 11 C 1.53191 * 108.77175 * 233.58222 * 10 9 7 12 12 C 1.53042 * 109.34324 * 305.34796 * 11 10 9 13 13 H 1.08999 * 109.46313 * 181.39809 * 12 11 10 14 14 N 1.46493 * 109.46014 * 301.36242 * 12 11 10 15 15 C 1.34774 * 120.00431 * 275.00010 * 14 12 11 16 16 O 1.21291 * 119.99418 * 359.97438 * 15 14 12 17 17 C 1.50692 * 120.00514 * 180.02562 * 15 14 12 18 18 C 1.52997 * 109.47426 * 179.97438 * 17 15 14 19 19 C 1.54270 * 110.03322 * 292.90771 * 18 17 15 20 20 C 1.54965 * 104.16342 * 217.13255 * 19 18 17 21 21 C 1.54897 * 102.77297 * 37.88619 * 20 19 18 22 22 C 1.53871 * 110.03774 * 175.69049 * 18 17 15 23 23 C 1.53111 * 109.50011 * 61.34972 * 12 11 10 24 24 H 1.08994 * 109.51392 * 58.63032 * 23 12 11 25 25 O 1.42892 * 109.48715 * 178.70409 * 23 12 11 26 26 C 1.46928 * 120.63227 * 27.65403 * 9 7 2 27 27 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.58889 * 113.79934 * 10 9 7 29 29 H 1.08996 * 109.58804 * 353.36829 * 10 9 7 30 30 H 1.08998 * 109.49729 * 65.32061 * 11 10 9 31 31 H 1.09005 * 109.49658 * 185.38085 * 11 10 9 32 32 H 0.97008 * 119.99995 * 94.99352 * 14 12 11 33 33 H 1.08993 * 109.47301 * 299.99619 * 17 15 14 34 34 H 1.09003 * 109.47442 * 59.99499 * 17 15 14 35 35 H 1.09003 * 110.01938 * 54.29661 * 18 17 15 36 36 H 1.08997 * 110.48746 * 335.78161 * 19 18 17 37 37 H 1.09003 * 110.48429 * 98.42506 * 19 18 17 38 38 H 1.09004 * 110.72047 * 279.57855 * 20 19 18 39 39 H 1.08997 * 110.92488 * 156.29359 * 20 19 18 40 40 H 1.09006 * 110.48404 * 203.40306 * 21 20 19 41 41 H 1.09006 * 110.59663 * 80.81965 * 21 20 19 42 42 H 1.09000 * 110.03833 * 238.57111 * 22 18 17 43 43 H 1.09008 * 110.03199 * 0.02562 * 22 18 17 44 44 H 0.96704 * 114.00198 * 179.85686 * 25 23 12 45 45 H 1.08996 * 109.58356 * 246.20564 * 26 9 7 46 46 H 1.08993 * 109.58512 * 6.62776 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0532 -1.2236 0.2799 9 7 1.3723 -2.3612 -0.3532 10 6 1.8190 -3.6547 0.1815 11 6 2.0740 -4.6102 -0.9884 12 6 0.8186 -4.6909 -1.8599 13 1 0.9894 -5.3894 -2.6791 14 7 -0.3093 -5.1564 -1.0491 15 6 -0.5082 -6.4767 -0.8661 16 8 0.2464 -7.2796 -1.3732 17 6 -1.6687 -6.9556 -0.0325 18 6 -1.6662 -8.4848 0.0145 19 6 -1.9734 -9.0571 -1.3849 20 6 -2.8462 -10.3056 -1.1008 21 6 -3.7280 -9.8441 0.0861 22 6 -2.7811 -8.9853 0.9495 23 6 0.5006 -3.3050 -2.4278 24 1 1.3489 -2.9472 -3.0111 25 8 -0.6540 -3.3866 -3.2656 26 6 0.2277 -2.3347 -1.2741 27 1 -0.4849 0.8401 -0.0004 28 1 1.0466 -4.0687 0.8297 29 1 2.7397 -3.5174 0.7485 30 1 2.9079 -4.2404 -1.5850 31 1 2.3137 -5.6013 -0.6031 32 1 -0.9129 -4.5142 -0.6438 33 1 -1.5768 -6.5606 0.9791 34 1 -2.6020 -6.6075 -0.4751 35 1 -0.6980 -8.8460 0.3612 36 1 -2.5278 -8.3318 -1.9804 37 1 -1.0512 -9.3425 -1.8911 38 1 -2.2244 -11.1535 -0.8132 39 1 -3.4616 -10.5552 -1.9651 40 1 -4.0860 -10.7040 0.6524 41 1 -4.5674 -9.2464 -0.2695 42 1 -2.3540 -9.5899 1.7496 43 1 -3.3242 -8.1387 1.3695 44 1 -0.9152 -2.5425 -3.6587 45 1 -0.6744 -2.6409 -0.7446 46 1 0.0985 -1.3265 -1.6675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090029392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:46 Heat of formation + Delta-G solvation = -107.180490 kcal Electronic energy + Delta-G solvation = -25219.090244 eV Core-core repulsion = 21721.237721 eV Total energy + Delta-G solvation = -3497.852523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28877 -39.74606 -38.43432 -36.86223 -35.60572 -33.74066 -32.51998 -31.16857 -30.44328 -29.49138 -27.43440 -26.46017 -24.03083 -23.48420 -22.06256 -21.47808 -20.38211 -20.20465 -18.86121 -18.23067 -18.07344 -16.94806 -16.74272 -16.59007 -16.13618 -15.79004 -15.68877 -15.47375 -15.07061 -14.69517 -14.44120 -14.16467 -14.12025 -13.79946 -13.51274 -13.26978 -12.96685 -12.83624 -12.68783 -12.68188 -12.15046 -12.07143 -11.97510 -11.90001 -11.82970 -11.80215 -11.62883 -11.48434 -11.25951 -11.25581 -10.96809 -10.64661 -10.59074 -9.94069 -8.71535 -7.90520 -5.35696 1.46154 1.50136 1.59164 1.77058 2.32126 2.49654 3.14022 3.26595 3.66163 3.67674 3.75700 3.83393 3.92411 4.11064 4.16203 4.26395 4.35812 4.38358 4.45100 4.46543 4.61706 4.65741 4.72266 4.75594 4.87061 4.92245 4.93822 4.96280 5.00228 5.08229 5.14210 5.16134 5.17510 5.29200 5.32120 5.42088 5.52797 5.57988 5.58765 5.62085 5.65415 6.34400 6.65532 6.82050 7.11931 7.35274 7.79683 8.31333 9.15163 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.003407 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.746594 B = 8215.615672 C = 8341.979173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.043 4.043 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.148 3.852 11 C -0.131 4.131 12 C 0.168 3.832 13 H 0.070 0.930 14 N -0.707 5.707 15 C 0.508 3.492 16 O -0.580 6.580 17 C -0.130 4.130 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.119 4.119 23 C 0.084 3.916 24 H 0.059 0.941 25 O -0.573 6.573 26 C 0.159 3.841 27 H 0.251 0.749 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.404 0.596 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.391 0.609 45 H 0.013 0.987 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 -14.485 -1.138 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.239 4.239 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.221 1.221 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.171 4.171 12 C 0.063 3.937 13 H 0.088 0.912 14 N -0.358 5.358 15 C 0.297 3.703 16 O -0.461 6.461 17 C -0.169 4.169 18 C -0.093 4.093 19 C -0.151 4.151 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.156 4.156 23 C 0.023 3.977 24 H 0.077 0.923 25 O -0.380 6.380 26 C 0.032 3.968 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.241 0.759 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.240 0.760 45 H 0.031 0.969 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.034 -15.534 -1.320 16.717 hybrid contribution 0.292 2.154 -0.016 2.174 sum -5.742 -13.380 -1.336 14.621 Atomic orbital electron populations 1.70148 1.06335 1.25892 1.54956 1.25699 0.96051 1.01143 1.01019 0.85275 0.78621 0.80136 0.76782 1.19461 1.21539 1.22087 1.19508 0.93064 0.85848 1.41069 0.91616 1.44181 1.35887 1.02159 1.50524 1.20960 0.97609 0.85499 0.93698 1.22240 0.96796 0.99741 0.98331 1.20652 0.86590 0.93666 0.92787 0.91202 1.46050 1.30246 1.07368 1.52185 1.21268 0.86690 0.81669 0.80700 1.90629 1.49178 1.54711 1.51567 1.21896 0.96575 0.97528 1.00920 1.21492 0.99330 0.92291 0.96166 1.22350 0.98992 0.97505 0.96299 1.22533 0.97889 0.97061 0.98721 1.22357 0.97662 0.99609 0.96232 1.22226 0.95776 1.00033 0.97587 1.22608 0.88016 0.95306 0.91778 0.92350 1.86392 1.47599 1.37910 1.66090 1.21196 0.88635 0.97832 0.89130 0.93947 0.96220 0.92641 0.90991 0.91153 0.75949 0.87536 0.87538 0.92128 0.92696 0.93391 0.91581 0.91165 0.90610 0.91240 0.91151 0.90561 0.76004 0.96877 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.09 11.19 21.65 0.24 -50.85 16 2 C -0.04 -2.27 4.91 84.86 0.42 -1.85 16 3 Si 0.96 42.79 29.59 68.60 2.03 44.82 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.26 -13.81 9.59 84.04 0.81 -13.00 16 8 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 9 N -0.60 -28.25 2.99 -699.09 -2.09 -30.35 16 10 C 0.15 5.92 6.26 86.36 0.54 6.46 16 11 C -0.13 -4.61 5.77 30.67 0.18 -4.43 16 12 C 0.17 5.93 2.47 45.04 0.11 6.05 16 13 H 0.07 2.61 7.57 -2.39 -0.02 2.59 16 14 N -0.71 -22.98 4.15 -442.31 -1.84 -24.82 16 15 C 0.51 15.85 7.57 87.65 0.66 16.52 16 16 O -0.58 -21.57 14.44 -3.06 -0.04 -21.61 16 17 C -0.13 -2.96 4.83 29.84 0.14 -2.82 16 18 C -0.07 -1.63 2.55 -10.07 -0.03 -1.66 16 19 C -0.11 -2.65 5.40 31.70 0.17 -2.48 16 20 C -0.12 -2.21 6.91 31.91 0.22 -1.99 16 21 C -0.12 -1.82 6.83 31.67 0.22 -1.60 16 22 C -0.12 -1.96 6.46 31.32 0.20 -1.75 16 23 C 0.08 3.05 3.36 30.70 0.10 3.15 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 O -0.57 -18.88 13.21 -148.98 -1.97 -20.85 16 26 C 0.16 6.91 4.64 86.36 0.40 7.31 16 27 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 28 H 0.02 0.80 7.74 -2.38 -0.02 0.78 16 29 H 0.06 2.20 7.93 -2.39 -0.02 2.19 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.40 13.07 6.87 -92.70 -0.64 12.43 16 33 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.11 2.13 8.02 -2.39 -0.02 2.11 16 35 H 0.06 1.55 7.95 -2.39 -0.02 1.53 16 36 H 0.05 1.32 7.77 -2.39 -0.02 1.30 16 37 H 0.05 1.34 7.63 -2.39 -0.02 1.32 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.12 7.67 -2.38 -0.02 1.10 16 44 H 0.39 10.20 9.08 -74.05 -0.67 9.53 16 45 H 0.01 0.60 6.64 -2.39 -0.02 0.59 16 46 H 0.06 3.19 6.04 -2.39 -0.01 3.18 16 Total: -1.00 -62.29 354.83 0.14 -62.15 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.34 Total: 33.60 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 4.15 Total: 7.91 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -3.69 Total: -106.02 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -2.01 Total: -42.46 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -62.29 0.14 -62.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090029392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.028 kcal (2) G-P(sol) polarization free energy of solvation -62.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds