Wall clock time and date at job start Tue Mar 31 2020 03:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47403 * 2 1 4 4 C 1.50700 * 109.47250 * 120.00208 * 2 1 3 5 5 O 1.21283 * 119.99839 * 119.99735 * 4 2 1 6 6 N 1.34770 * 120.00121 * 299.99834 * 4 2 1 7 7 C 1.46497 * 120.00253 * 180.02562 * 6 4 2 8 8 H 1.08995 * 109.46003 * 34.97192 * 7 6 4 9 9 C 1.53037 * 109.46003 * 274.99812 * 7 6 4 10 10 C 1.53197 * 109.31260 * 178.61220 * 9 7 6 11 11 N 1.46921 * 108.77398 * 54.64007 * 10 9 7 12 12 C 1.36935 * 120.63466 * 126.36893 * 11 10 9 13 13 H 1.07997 * 120.00014 * 209.56132 * 12 11 10 14 14 C 1.38813 * 119.99670 * 29.55510 * 12 11 10 15 15 N 1.31619 * 120.00194 * 198.89589 * 14 12 11 16 16 Si 1.86803 * 120.00123 * 18.90383 * 14 12 11 17 17 H 1.48504 * 109.46919 * 273.06864 * 16 14 12 18 18 H 1.48498 * 109.46986 * 33.06325 * 16 14 12 19 19 H 1.48492 * 109.47331 * 153.06995 * 16 14 12 20 20 C 1.46932 * 118.73709 * 306.64347 * 11 10 9 21 21 C 1.52758 * 109.01102 * 53.30812 * 20 11 10 22 22 H 1.08998 * 109.59285 * 185.53582 * 21 20 11 23 23 O 1.42907 * 109.35711 * 65.49926 * 21 20 11 24 24 C 1.53000 * 109.46936 * 240.00127 * 2 1 3 25 25 C 1.53004 * 117.50126 * 128.74559 * 24 2 1 26 26 C 1.52999 * 117.50226 * 60.08947 * 24 2 1 27 27 H 1.08996 * 109.46841 * 299.99673 * 1 2 3 28 28 H 1.09001 * 109.47005 * 60.00189 * 1 2 3 29 29 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47294 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46829 * 300.00283 * 3 2 1 32 32 H 1.08999 * 109.46870 * 59.99805 * 3 2 1 33 33 H 0.97007 * 119.99792 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.49591 * 58.66348 * 9 7 6 35 35 H 1.08993 * 109.52665 * 298.58181 * 9 7 6 36 36 H 1.08995 * 109.58894 * 294.84966 * 10 9 7 37 37 H 1.09005 * 109.58534 * 174.42709 * 10 9 7 38 38 H 0.97000 * 120.00123 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.58277 * 173.14686 * 20 11 10 40 40 H 1.09004 * 109.58325 * 293.56407 * 20 11 10 41 41 H 0.96697 * 113.99711 * 60.16221 * 23 21 20 42 42 H 1.09005 * 115.55255 * 274.41637 * 24 2 1 43 43 H 1.09001 * 117.49310 * 0.02562 * 25 24 2 44 44 H 1.09004 * 117.50176 * 145.01466 * 25 24 2 45 45 H 1.08998 * 117.49902 * 214.98086 * 26 24 2 46 46 H 1.08999 * 117.49548 * 359.97166 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9403 3.6506 8 1 3.1947 -1.3325 3.4608 9 6 1.2517 -2.0947 3.9946 10 6 1.7846 -2.8355 5.2252 11 7 1.9756 -1.8675 6.3138 12 6 1.4029 -2.0747 7.5402 13 1 1.1249 -1.2319 8.1557 14 6 1.1794 -3.3680 7.9923 15 7 0.3182 -3.5861 8.9634 16 14 2.1012 -4.7988 7.2225 17 1 1.3582 -5.2828 6.0313 18 1 3.4565 -4.3513 6.8124 19 1 2.2216 -5.8997 8.2118 20 6 2.7879 -0.6698 6.0597 21 6 2.2485 0.0438 4.8215 22 1 2.9022 0.8779 4.5664 23 8 0.9336 0.5338 5.0924 24 6 2.0399 -0.7212 -1.2493 25 6 3.0763 0.0040 -2.1102 26 6 1.6374 -0.1483 -2.6096 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.1488 0.5385 2.5435 34 1 1.1964 -2.7831 3.1513 35 1 0.2580 -1.7014 4.2088 36 1 2.7373 -3.3068 4.9839 37 1 1.0665 -3.5953 5.5337 38 1 0.1624 -4.4898 9.2795 39 1 2.7317 -0.0012 6.9187 40 1 3.8242 -0.9609 5.8879 41 1 0.8919 1.1641 5.8245 42 1 2.1253 -1.8046 -1.1648 43 1 3.3950 0.9947 -1.7863 44 1 3.8432 -0.6023 -2.5923 45 1 1.4582 -0.8547 -3.4201 46 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090502909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:25 Heat of formation + Delta-G solvation = -39.919648 kcal Electronic energy + Delta-G solvation = -25557.815946 eV Core-core repulsion = 22062.880071 eV Total energy + Delta-G solvation = -3494.935874 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51869 -38.77042 -37.41616 -35.14804 -34.47270 -33.28704 -31.80820 -30.08055 -29.27542 -27.72248 -25.33718 -24.43699 -22.77118 -22.43367 -22.26397 -20.86561 -19.89513 -18.63718 -17.37670 -17.01945 -16.41288 -16.04625 -15.67049 -15.02823 -14.75941 -14.60353 -14.33338 -14.19613 -13.96611 -13.48347 -13.08768 -12.94031 -12.74550 -12.43821 -12.38213 -12.33053 -11.99474 -11.92926 -11.75528 -11.45489 -11.32957 -11.07501 -10.97405 -10.83000 -10.52111 -10.24273 -10.18327 -10.14121 -9.98641 -9.65014 -9.50976 -9.42719 -8.75570 -8.54371 -6.94290 -5.94421 -3.32506 2.76790 3.22234 3.35379 3.50509 3.53852 3.68744 4.33551 4.49254 4.54375 4.61120 4.68419 4.82909 4.87225 4.95024 5.01383 5.12869 5.25377 5.27038 5.32814 5.42272 5.42692 5.50695 5.57872 5.60807 5.64816 5.70615 5.76651 5.90670 5.92239 5.98624 6.00223 6.13378 6.16809 6.27083 6.29762 6.41435 6.50081 6.68914 6.77855 6.98630 7.70134 7.93041 8.04906 8.32401 8.38830 8.92422 9.71503 10.08742 11.21527 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.003936 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.144776 B = 7111.936882 C = 7552.907471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C -0.144 4.144 4 C 0.521 3.479 5 O -0.541 6.541 6 N -0.717 5.717 7 C 0.161 3.839 8 H 0.090 0.910 9 C -0.136 4.136 10 C 0.127 3.873 11 N -0.596 5.596 12 C -0.257 4.257 13 H 0.084 0.916 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.885 3.115 17 H -0.286 1.286 18 H -0.272 1.272 19 H -0.303 1.303 20 C 0.121 3.879 21 C 0.082 3.918 22 H 0.050 0.950 23 O -0.554 6.554 24 C -0.128 4.128 25 C -0.182 4.182 26 C -0.179 4.179 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.401 0.599 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.078 0.922 38 H 0.263 0.737 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.375 0.625 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 12.127 -19.528 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.054 4.054 3 C -0.201 4.201 4 C 0.307 3.693 5 O -0.417 6.417 6 N -0.367 5.367 7 C 0.057 3.943 8 H 0.108 0.892 9 C -0.177 4.177 10 C 0.001 3.999 11 N -0.320 5.320 12 C -0.386 4.386 13 H 0.101 0.899 14 C -0.174 4.174 15 N -0.552 5.552 16 Si 0.715 3.285 17 H -0.213 1.213 18 H -0.198 1.198 19 H -0.231 1.231 20 C -0.007 4.007 21 C 0.021 3.979 22 H 0.067 0.933 23 O -0.359 6.359 24 C -0.147 4.147 25 C -0.219 4.219 26 C -0.216 4.216 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.222 0.778 42 H 0.133 0.867 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.814 10.897 -19.945 22.901 hybrid contribution 0.355 -0.220 0.163 0.448 sum 3.169 10.677 -19.782 22.702 Atomic orbital electron populations 1.21831 0.92183 1.02992 1.02555 1.20248 0.97031 0.95783 0.92370 1.21988 1.01773 0.93724 1.02610 1.20396 0.80025 0.84409 0.84469 1.90681 1.38069 1.26281 1.86707 1.46130 1.53278 1.32019 1.05289 1.20957 0.98851 0.92431 0.82061 0.89169 1.22297 1.00285 0.96612 0.98474 1.21395 0.98163 0.92822 0.87528 1.44182 1.57141 1.21558 1.09077 1.18842 1.33569 0.93217 0.92928 0.89880 1.25295 0.98272 0.97442 0.96394 1.69816 1.33953 1.21111 1.30345 0.86974 0.81572 0.82606 0.77336 1.21328 1.19767 1.23147 1.21499 0.93606 0.90328 0.95220 1.22504 0.84818 0.94756 0.95854 0.93264 1.86446 1.28419 1.64954 1.56088 1.22057 1.03289 0.99916 0.89409 1.23127 0.92467 1.02358 1.03924 1.22974 0.98210 1.03168 0.97207 0.91867 0.91467 0.91855 0.91680 0.91427 0.91929 0.76394 0.92640 0.90590 0.95769 0.90442 0.92741 0.91089 0.95104 0.77781 0.86718 0.88297 0.89001 0.88877 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.21 37.16 0.31 -0.97 16 2 C -0.05 -0.54 0.72 -155.66 -0.11 -0.65 16 3 C -0.14 -1.19 6.97 37.16 0.26 -0.93 16 4 C 0.52 7.49 6.45 -10.99 -0.07 7.42 16 5 O -0.54 -9.90 15.31 5.56 0.09 -9.82 16 6 N -0.72 -9.90 4.84 -53.77 -0.26 -10.16 16 7 C 0.16 2.68 2.20 -67.89 -0.15 2.53 16 8 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 9 C -0.14 -2.66 5.51 -26.61 -0.15 -2.81 16 10 C 0.13 2.89 4.20 -3.71 -0.02 2.87 16 11 N -0.60 -14.00 2.69 -172.58 -0.46 -14.46 16 12 C -0.26 -7.11 10.03 -15.06 -0.15 -7.26 16 13 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 14 C 0.02 0.72 5.25 -17.43 -0.09 0.63 16 15 N -0.91 -27.97 13.97 55.49 0.78 -27.19 16 16 Si 0.88 22.87 24.35 -169.99 -4.14 18.73 16 17 H -0.29 -7.19 6.40 56.52 0.36 -6.83 16 18 H -0.27 -6.97 6.93 56.52 0.39 -6.58 16 19 H -0.30 -7.94 7.11 56.52 0.40 -7.53 16 20 C 0.12 2.25 6.12 -3.93 -0.02 2.22 16 21 C 0.08 1.26 3.37 -26.83 -0.09 1.17 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 O -0.55 -8.55 12.08 -35.23 -0.43 -8.98 16 24 C -0.13 -1.37 4.75 -90.62 -0.43 -1.80 16 25 C -0.18 -1.64 9.57 -26.70 -0.26 -1.90 16 26 C -0.18 -1.45 9.38 -26.70 -0.25 -1.70 16 27 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 28 H 0.07 0.50 7.29 -51.93 -0.38 0.12 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.57 6.97 -51.93 -0.36 0.21 16 31 H 0.07 0.45 7.07 -51.92 -0.37 0.09 16 32 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 33 H 0.40 4.78 7.09 -40.82 -0.29 4.49 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.57 7.61 -51.93 -0.40 1.17 16 36 H 0.02 0.56 7.21 -51.93 -0.37 0.18 16 37 H 0.08 1.94 4.52 -51.93 -0.23 1.70 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.38 4.62 9.08 45.56 0.41 5.04 16 42 H 0.11 1.48 7.47 -51.93 -0.39 1.09 16 43 H 0.10 0.80 5.85 -51.93 -0.30 0.50 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.65 7.07 -51.93 -0.37 0.29 16 LS Contribution 349.50 15.07 5.27 5.27 Total: -1.00 -33.09 349.50 -7.17 -40.26 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.78 Total: 7.53 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.22 Total: -1.17 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.05 Total: -51.81 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.34 Total: -18.80 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.14 Total: 18.73 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.09 -7.17 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090502909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.339 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds