Wall clock time and date at job start Tue Mar 31 2020 03:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47403 * 2 1 4 4 C 1.50700 * 109.47250 * 120.00208 * 2 1 3 5 5 O 1.21283 * 119.99839 * 119.99735 * 4 2 1 6 6 N 1.34770 * 120.00121 * 299.99834 * 4 2 1 7 7 C 1.46497 * 120.00253 * 180.02562 * 6 4 2 8 8 H 1.08995 * 109.46003 * 34.97192 * 7 6 4 9 9 C 1.53037 * 109.46003 * 274.99812 * 7 6 4 10 10 C 1.53197 * 109.31260 * 178.61220 * 9 7 6 11 11 N 1.46921 * 108.77398 * 54.64007 * 10 9 7 12 12 C 1.36935 * 120.63466 * 126.36893 * 11 10 9 13 13 H 1.07997 * 120.00014 * 209.56132 * 12 11 10 14 14 C 1.38813 * 119.99670 * 29.55510 * 12 11 10 15 15 N 1.31619 * 120.00194 * 198.89589 * 14 12 11 16 16 Si 1.86803 * 120.00123 * 18.90383 * 14 12 11 17 17 H 1.48504 * 109.46919 * 273.06864 * 16 14 12 18 18 H 1.48498 * 109.46986 * 33.06325 * 16 14 12 19 19 H 1.48492 * 109.47331 * 153.06995 * 16 14 12 20 20 C 1.46932 * 118.73709 * 306.64347 * 11 10 9 21 21 C 1.52758 * 109.01102 * 53.30812 * 20 11 10 22 22 H 1.08998 * 109.59285 * 185.53582 * 21 20 11 23 23 O 1.42907 * 109.35711 * 65.49926 * 21 20 11 24 24 C 1.53000 * 109.46936 * 240.00127 * 2 1 3 25 25 C 1.53004 * 117.50126 * 128.74559 * 24 2 1 26 26 C 1.52999 * 117.50226 * 60.08947 * 24 2 1 27 27 H 1.08996 * 109.46841 * 299.99673 * 1 2 3 28 28 H 1.09001 * 109.47005 * 60.00189 * 1 2 3 29 29 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47294 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46829 * 300.00283 * 3 2 1 32 32 H 1.08999 * 109.46870 * 59.99805 * 3 2 1 33 33 H 0.97007 * 119.99792 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.49591 * 58.66348 * 9 7 6 35 35 H 1.08993 * 109.52665 * 298.58181 * 9 7 6 36 36 H 1.08995 * 109.58894 * 294.84966 * 10 9 7 37 37 H 1.09005 * 109.58534 * 174.42709 * 10 9 7 38 38 H 0.97000 * 120.00123 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.58277 * 173.14686 * 20 11 10 40 40 H 1.09004 * 109.58325 * 293.56407 * 20 11 10 41 41 H 0.96697 * 113.99711 * 60.16221 * 23 21 20 42 42 H 1.09005 * 115.55255 * 274.41637 * 24 2 1 43 43 H 1.09001 * 117.49310 * 0.02562 * 25 24 2 44 44 H 1.09004 * 117.50176 * 145.01466 * 25 24 2 45 45 H 1.08998 * 117.49902 * 214.98086 * 26 24 2 46 46 H 1.08999 * 117.49548 * 359.97166 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9403 3.6506 8 1 3.1947 -1.3325 3.4608 9 6 1.2517 -2.0947 3.9946 10 6 1.7846 -2.8355 5.2252 11 7 1.9756 -1.8675 6.3138 12 6 1.4029 -2.0747 7.5402 13 1 1.1249 -1.2319 8.1557 14 6 1.1794 -3.3680 7.9923 15 7 0.3182 -3.5861 8.9634 16 14 2.1012 -4.7988 7.2225 17 1 1.3582 -5.2828 6.0313 18 1 3.4565 -4.3513 6.8124 19 1 2.2216 -5.8997 8.2118 20 6 2.7879 -0.6698 6.0597 21 6 2.2485 0.0438 4.8215 22 1 2.9022 0.8779 4.5664 23 8 0.9336 0.5338 5.0924 24 6 2.0399 -0.7212 -1.2493 25 6 3.0763 0.0040 -2.1102 26 6 1.6374 -0.1483 -2.6096 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.1488 0.5385 2.5435 34 1 1.1964 -2.7831 3.1513 35 1 0.2580 -1.7014 4.2088 36 1 2.7373 -3.3068 4.9839 37 1 1.0665 -3.5953 5.5337 38 1 0.1624 -4.4898 9.2795 39 1 2.7317 -0.0012 6.9187 40 1 3.8242 -0.9609 5.8879 41 1 0.8919 1.1641 5.8245 42 1 2.1253 -1.8046 -1.1648 43 1 3.3950 0.9947 -1.7863 44 1 3.8432 -0.6023 -2.5923 45 1 1.4582 -0.8547 -3.4201 46 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090502909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:24 Heat of formation + Delta-G solvation = -65.001202 kcal Electronic energy + Delta-G solvation = -25558.903564 eV Core-core repulsion = 22062.880071 eV Total energy + Delta-G solvation = -3496.023492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59805 -40.05693 -38.46330 -36.74088 -35.74796 -34.36868 -33.62739 -31.68606 -30.78479 -28.37512 -27.00773 -25.40252 -24.37148 -23.88715 -23.07096 -22.05628 -21.33037 -19.68298 -18.99879 -18.14373 -17.70163 -17.55679 -17.01879 -16.29113 -16.05357 -15.90910 -15.72505 -15.47080 -15.20754 -14.97153 -14.66362 -13.98778 -13.93870 -13.72856 -13.67158 -13.56494 -13.16942 -13.13290 -13.01215 -12.76844 -12.46713 -12.44130 -12.16638 -11.97642 -11.92249 -11.77291 -11.69289 -11.44195 -11.25404 -11.09338 -10.92082 -10.68001 -10.51647 -10.01773 -8.90280 -8.18004 -5.50620 1.27613 1.37170 1.45363 1.65671 2.13432 2.39458 2.95350 3.00954 3.26257 3.40576 3.59089 3.67894 3.76946 3.92411 3.98111 4.09634 4.15598 4.18446 4.22340 4.33366 4.40912 4.49851 4.61133 4.71147 4.72461 4.77238 4.80461 4.87580 4.88354 4.92669 4.94547 4.97345 4.99154 5.05467 5.24226 5.28452 5.31508 5.34265 5.39082 5.50707 5.86158 6.12347 6.61120 6.85000 6.99586 7.28737 7.59311 8.01293 9.01756 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.003936 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.144776 B = 7111.936882 C = 7552.907471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 C -0.141 4.141 4 C 0.516 3.484 5 O -0.585 6.585 6 N -0.704 5.704 7 C 0.165 3.835 8 H 0.080 0.920 9 C -0.124 4.124 10 C 0.125 3.875 11 N -0.608 5.608 12 C -0.237 4.237 13 H 0.062 0.938 14 C -0.031 4.031 15 N -0.955 5.955 16 Si 0.937 3.063 17 H -0.281 1.281 18 H -0.267 1.267 19 H -0.309 1.309 20 C 0.111 3.889 21 C 0.098 3.902 22 H 0.092 0.908 23 O -0.565 6.565 24 C -0.155 4.155 25 C -0.182 4.182 26 C -0.157 4.157 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.050 0.950 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 14.790 -21.913 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.045 4.045 3 C -0.198 4.198 4 C 0.304 3.696 5 O -0.465 6.465 6 N -0.355 5.355 7 C 0.059 3.941 8 H 0.098 0.902 9 C -0.164 4.164 10 C -0.001 4.001 11 N -0.332 5.332 12 C -0.367 4.367 13 H 0.080 0.920 14 C -0.226 4.226 15 N -0.602 5.602 16 Si 0.767 3.233 17 H -0.208 1.208 18 H -0.192 1.192 19 H -0.237 1.237 20 C -0.014 4.014 21 C 0.037 3.963 22 H 0.109 0.891 23 O -0.373 6.373 24 C -0.173 4.173 25 C -0.219 4.219 26 C -0.193 4.193 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.240 0.760 42 H 0.099 0.901 43 H 0.130 0.870 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.301 13.620 -22.366 26.394 hybrid contribution 0.208 -0.986 0.871 1.332 sum 3.509 12.634 -21.495 25.179 Atomic orbital electron populations 1.21859 0.91092 1.02307 1.04146 1.20237 0.97700 0.96671 0.89914 1.22014 1.01491 0.91932 1.04382 1.21212 0.79017 0.83852 0.85504 1.90663 1.40136 1.28383 1.87344 1.45944 1.53182 1.32029 1.04389 1.20726 0.97426 0.92077 0.83839 0.90210 1.22089 1.00203 0.97442 0.96655 1.21320 0.97500 0.92685 0.88597 1.44281 1.57974 1.23159 1.07830 1.18858 1.31710 0.92313 0.93792 0.92037 1.25843 0.99471 0.99827 0.97463 1.69926 1.36118 1.21397 1.32741 0.86096 0.80623 0.80010 0.76523 1.20786 1.19166 1.23735 1.21816 0.93549 0.88721 0.97349 1.22314 0.85435 0.95182 0.93398 0.89051 1.86414 1.28404 1.65519 1.56950 1.21963 1.05929 0.98420 0.91019 1.23223 0.92872 1.02579 1.03239 1.23069 0.97621 1.03429 0.95221 0.91177 0.88972 0.93706 0.92196 0.89090 0.90775 0.74867 0.93156 0.91776 0.95728 0.93199 0.93030 0.90220 0.93990 0.75991 0.90050 0.86954 0.89457 0.88414 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.21 71.98 0.59 -1.57 16 2 C -0.04 -0.79 0.72 -52.93 -0.04 -0.83 16 3 C -0.14 -1.80 6.97 71.98 0.50 -1.30 16 4 C 0.52 14.20 6.45 87.66 0.56 14.76 16 5 O -0.59 -21.54 15.31 -3.04 -0.05 -21.58 16 6 N -0.70 -17.95 4.84 -442.42 -2.14 -20.09 16 7 C 0.16 5.19 2.20 45.02 0.10 5.28 16 8 H 0.08 2.75 7.58 -2.39 -0.02 2.73 16 9 C -0.12 -4.77 5.51 30.67 0.17 -4.60 16 10 C 0.12 5.66 4.20 86.37 0.36 6.02 16 11 N -0.61 -28.17 2.69 -699.91 -1.88 -30.06 16 12 C -0.24 -13.21 10.03 84.03 0.84 -12.37 16 13 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 14 C -0.03 -1.84 5.25 84.86 0.45 -1.40 16 15 N -0.96 -60.38 13.97 21.65 0.30 -60.07 16 16 Si 0.94 48.22 24.35 68.60 1.67 49.90 16 17 H -0.28 -14.03 6.40 99.48 0.64 -13.40 16 18 H -0.27 -13.29 6.93 99.48 0.69 -12.60 16 19 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 20 C 0.11 3.90 6.12 86.22 0.53 4.43 16 21 C 0.10 2.71 3.37 30.53 0.10 2.81 16 22 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 23 O -0.57 -15.84 12.08 -148.98 -1.80 -17.64 16 24 C -0.15 -3.11 4.75 -10.79 -0.05 -3.16 16 25 C -0.18 -2.91 9.57 30.62 0.29 -2.61 16 26 C -0.16 -2.10 9.38 30.62 0.29 -1.81 16 27 H 0.07 1.01 7.56 -2.39 -0.02 0.99 16 28 H 0.09 1.01 7.29 -2.39 -0.02 0.99 16 29 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.85 6.97 -2.39 -0.02 0.83 16 31 H 0.09 0.77 7.07 -2.38 -0.02 0.75 16 32 H 0.07 0.79 7.56 -2.39 -0.02 0.77 16 33 H 0.41 8.52 7.09 -92.70 -0.66 7.87 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.62 7.61 -2.39 -0.02 2.60 16 36 H 0.02 1.12 7.21 -2.39 -0.02 1.10 16 37 H 0.05 2.52 4.52 -2.38 -0.01 2.51 16 38 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.08 2.64 7.93 -2.39 -0.02 2.63 16 40 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.39 8.42 9.08 -74.06 -0.67 7.75 16 42 H 0.08 2.18 7.47 -2.38 -0.02 2.16 16 43 H 0.11 1.48 5.85 -2.39 -0.01 1.46 16 44 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.11 1.07 7.07 -2.39 -0.02 1.06 16 Total: -1.00 -74.01 349.50 0.37 -73.64 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.43 Total: 22.25 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 4.70 Total: 3.66 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -3.72 Total: -110.22 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.85 Total: -39.22 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.67 Total: 49.90 kcal Total: -74.01 0.37 -73.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090502909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.635 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds