Wall clock time and date at job start Tue Mar 31 2020 03:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47145 * 2 1 4 4 C 1.50703 * 109.47040 * 120.00278 * 2 1 3 5 5 O 1.21278 * 120.00316 * 120.00145 * 4 2 1 6 6 N 1.34777 * 119.99628 * 299.99449 * 4 2 1 7 7 C 1.46500 * 119.99830 * 179.97438 * 6 4 2 8 8 H 1.08994 * 109.46363 * 325.03728 * 7 6 4 9 9 C 1.53039 * 109.45589 * 85.00793 * 7 6 4 10 10 C 1.53192 * 109.31278 * 181.38473 * 9 7 6 11 11 N 1.46923 * 108.77671 * 305.36559 * 10 9 7 12 12 C 1.36940 * 120.62789 * 233.58710 * 11 10 9 13 13 H 1.07997 * 120.00158 * 27.68411 * 12 11 10 14 14 C 1.38809 * 119.99695 * 207.67945 * 12 11 10 15 15 N 1.31615 * 120.00148 * 17.37256 * 14 12 11 16 16 Si 1.86808 * 120.00179 * 197.36602 * 14 12 11 17 17 H 1.48497 * 109.46891 * 60.00093 * 16 14 12 18 18 H 1.48490 * 109.47438 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47010 * 300.00853 * 16 14 12 20 20 C 1.46922 * 118.73875 * 53.60327 * 11 10 9 21 21 C 1.53042 * 109.45956 * 205.07129 * 7 6 4 22 22 H 1.09005 * 109.49928 * 298.56562 * 21 7 6 23 23 O 1.42901 * 109.49894 * 58.66718 * 21 7 6 24 24 C 1.52999 * 109.47007 * 239.99912 * 2 1 3 25 25 C 1.53005 * 117.49802 * 128.62458 * 24 2 1 26 26 C 1.52999 * 117.49980 * 60.00350 * 24 2 1 27 27 H 1.08995 * 109.46972 * 300.00117 * 1 2 3 28 28 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46651 * 59.99824 * 1 2 3 30 30 H 1.08995 * 109.46766 * 60.00184 * 3 2 1 31 31 H 1.09000 * 109.46914 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47088 * 299.99759 * 3 2 1 33 33 H 0.96998 * 120.00038 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.50076 * 301.33370 * 9 7 6 35 35 H 1.08996 * 109.50120 * 61.39930 * 9 7 6 36 36 H 1.09002 * 109.58589 * 65.15136 * 10 9 7 37 37 H 1.08999 * 109.58917 * 185.43169 * 10 9 7 38 38 H 0.97003 * 120.00241 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.58606 * 66.18779 * 20 11 10 40 40 H 1.09004 * 109.58649 * 186.60599 * 20 11 10 41 41 H 0.96696 * 113.99823 * 179.97438 * 23 21 7 42 42 H 1.08998 * 115.55125 * 274.32879 * 24 2 1 43 43 H 1.08994 * 117.50040 * 359.97438 * 25 24 2 44 44 H 1.08999 * 117.49495 * 145.01865 * 25 24 2 45 45 H 1.09003 * 117.49711 * 214.98256 * 26 24 2 46 46 H 1.08996 * 117.50029 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1946 -0.9409 3.6507 8 1 2.2314 -2.0136 3.4609 9 6 3.5977 -0.4357 3.9947 10 6 4.1184 -1.1849 5.2252 11 7 3.1421 -1.0424 6.3139 12 6 3.5286 -0.5722 7.5406 13 1 4.3744 0.0944 7.6214 14 6 2.8331 -0.9524 8.6801 15 7 2.0415 -2.0034 8.6480 16 14 3.0210 0.0274 10.2595 17 1 2.5892 1.4290 10.0266 18 1 2.1801 -0.5800 11.3219 19 1 4.4435 0.0121 10.6853 20 6 1.7433 -1.4144 6.0614 21 6 1.2491 -0.6626 4.8215 22 1 1.2311 0.4076 5.0281 23 8 -0.0673 -1.1068 4.4875 24 6 2.0400 -0.7213 -1.2492 25 6 3.0742 0.0051 -2.1117 26 6 1.6358 -0.1495 -2.6096 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.1489 0.5385 2.5435 34 1 4.2651 -0.6131 3.1514 35 1 3.5575 0.6323 4.2084 36 1 4.2452 -2.2403 4.9839 37 1 5.0753 -0.7628 5.5322 38 1 1.5552 -2.2689 9.4443 39 1 1.6763 -2.4884 5.8884 40 1 1.1318 -1.1420 6.9217 41 1 -0.7203 -0.9618 5.1858 42 1 2.1267 -1.8045 -1.1642 43 1 3.3909 0.9970 -1.7893 44 1 3.8416 -0.6002 -2.5941 45 1 1.4568 -0.8566 -3.4196 46 1 1.0062 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090502912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:29 Heat of formation + Delta-G solvation = -48.626426 kcal Electronic energy + Delta-G solvation = -25376.740292 eV Core-core repulsion = 21881.426864 eV Total energy + Delta-G solvation = -3495.313429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39316 -38.49950 -37.22736 -35.26501 -34.38066 -33.28321 -31.86447 -29.35225 -28.80538 -27.64723 -25.32484 -24.43325 -22.60097 -22.36142 -21.96048 -20.76136 -19.65162 -18.54037 -17.33421 -16.77357 -16.55494 -16.16346 -15.40694 -14.92992 -14.79578 -14.52925 -14.04406 -13.79114 -13.60238 -13.34822 -13.02080 -12.87584 -12.58437 -12.37249 -12.27556 -12.17668 -11.93061 -11.67286 -11.66185 -11.26158 -11.21006 -10.90651 -10.81934 -10.78713 -10.46302 -10.39873 -10.22203 -10.10563 -10.01061 -9.73005 -9.45908 -9.23460 -8.69458 -8.51766 -6.78647 -5.87533 -3.30963 2.90348 3.32148 3.35680 3.39430 3.40190 3.76120 4.40478 4.41189 4.55915 4.68167 4.75876 4.89900 4.95550 5.09341 5.28492 5.31484 5.39636 5.40975 5.45776 5.49341 5.57178 5.62279 5.67557 5.72176 5.78179 5.92059 5.98177 5.99097 6.01942 6.06288 6.10263 6.21659 6.26786 6.46036 6.50362 6.71006 6.89761 6.91779 7.12073 7.45354 7.70983 7.81756 8.09832 8.35520 8.51779 9.10767 9.73689 10.30038 11.20826 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033034 B = 0.003487 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.400737 B = 8027.638729 C = 8289.694063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 C -0.144 4.144 4 C 0.524 3.476 5 O -0.542 6.542 6 N -0.713 5.713 7 C 0.162 3.838 8 H 0.086 0.914 9 C -0.138 4.138 10 C 0.145 3.855 11 N -0.589 5.589 12 C -0.257 4.257 13 H 0.068 0.932 14 C 0.003 3.997 15 N -0.902 5.902 16 Si 0.904 3.096 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.148 3.852 21 C 0.072 3.928 22 H 0.051 0.949 23 O -0.572 6.572 24 C -0.127 4.127 25 C -0.182 4.182 26 C -0.180 4.180 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.060 0.940 38 H 0.256 0.744 39 H 0.029 0.971 40 H 0.094 0.906 41 H 0.375 0.625 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 7.364 -17.571 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.055 4.055 3 C -0.201 4.201 4 C 0.309 3.691 5 O -0.419 6.419 6 N -0.363 5.363 7 C 0.058 3.942 8 H 0.104 0.896 9 C -0.179 4.179 10 C 0.018 3.982 11 N -0.313 5.313 12 C -0.386 4.386 13 H 0.086 0.914 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.734 3.266 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.208 1.208 20 C 0.021 3.979 21 C 0.012 3.988 22 H 0.069 0.931 23 O -0.377 6.377 24 C -0.145 4.145 25 C -0.219 4.219 26 C -0.217 4.217 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.112 0.888 41 H 0.222 0.778 42 H 0.133 0.867 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.331 6.395 -18.042 19.429 hybrid contribution -0.479 0.952 1.478 1.822 sum -3.809 7.347 -16.564 18.516 Atomic orbital electron populations 1.21810 0.92275 1.02915 1.02368 1.20255 0.96969 0.95778 0.92498 1.21985 1.01877 0.93742 1.02486 1.20312 0.80061 0.84331 0.84396 1.90670 1.38093 1.26416 1.86683 1.46084 1.52921 1.31696 1.05569 1.20965 0.92825 0.97969 0.82414 0.89557 1.22402 0.95114 1.00851 0.99504 1.20934 0.93138 0.96693 0.87425 1.43997 1.02362 1.76068 1.08853 1.19171 1.14906 1.21514 0.83033 0.91402 1.25072 1.00583 0.96306 0.97626 1.70021 1.32178 1.23579 1.28813 0.86344 0.77750 0.79685 0.82854 1.20995 1.21582 1.20770 1.21415 0.86751 0.95887 0.93815 1.22971 0.81805 0.98035 0.96035 0.93148 1.86416 1.19315 1.86623 1.45347 1.22050 1.03233 0.99904 0.89358 1.23117 0.92449 1.02382 1.03916 1.22963 0.98267 1.03160 0.97271 0.91943 0.91894 0.91633 0.91995 0.91615 0.91514 0.77122 0.91873 0.92100 0.95884 0.92155 0.93429 0.95276 0.88840 0.77818 0.86731 0.88288 0.89003 0.88928 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.21 37.16 0.31 -1.02 16 2 C -0.05 -0.58 0.72 -155.66 -0.11 -0.70 16 3 C -0.14 -1.32 6.97 37.16 0.26 -1.06 16 4 C 0.52 8.07 6.45 -10.98 -0.07 8.00 16 5 O -0.54 -10.51 15.31 5.56 0.09 -10.42 16 6 N -0.71 -10.73 4.70 -53.77 -0.25 -10.98 16 7 C 0.16 2.95 2.12 -67.89 -0.14 2.81 16 8 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 9 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 10 C 0.14 3.08 6.51 -3.71 -0.02 3.06 16 11 N -0.59 -14.44 2.99 -172.32 -0.52 -14.95 16 12 C -0.26 -6.86 9.59 -15.06 -0.14 -7.00 16 13 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 14 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 15 N -0.90 -25.47 11.19 55.49 0.62 -24.85 16 16 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.15 3.43 4.94 -3.71 -0.02 3.41 16 21 C 0.07 1.35 3.14 -26.61 -0.08 1.26 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 O -0.57 -9.71 13.16 -35.23 -0.46 -10.17 16 24 C -0.13 -1.44 4.76 -90.62 -0.43 -1.87 16 25 C -0.18 -1.76 9.57 -26.73 -0.26 -2.01 16 26 C -0.18 -1.55 9.38 -26.73 -0.25 -1.80 16 27 H 0.06 0.58 7.56 -51.93 -0.39 0.18 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 30 H 0.06 0.53 7.56 -51.93 -0.39 0.13 16 31 H 0.06 0.65 6.97 -51.93 -0.36 0.29 16 32 H 0.07 0.50 7.07 -51.93 -0.37 0.13 16 33 H 0.40 5.06 7.44 -40.82 -0.30 4.75 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 1.24 7.94 -51.93 -0.41 0.82 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 41 H 0.38 5.09 9.08 45.56 0.41 5.50 16 42 H 0.11 1.55 7.47 -51.93 -0.39 1.16 16 43 H 0.10 0.88 5.85 -51.93 -0.30 0.58 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.70 7.07 -51.93 -0.37 0.33 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -31.15 357.43 -8.27 -39.42 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.89 Total: 10.16 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.21 Total: 0.39 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.15 Total: -50.79 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.38 Total: -20.59 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.15 -8.27 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090502912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.209 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds