Wall clock time and date at job start Tue Mar 31 2020 03:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46761 * 2 1 4 4 O 1.42898 * 109.47247 * 239.99967 * 2 1 3 5 5 C 1.52997 * 109.47000 * 119.99671 * 2 1 3 6 6 C 1.50703 * 109.47054 * 60.00758 * 5 2 1 7 7 O 1.21281 * 119.99786 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00288 * 180.02562 * 6 5 2 9 9 C 1.47194 * 126.69952 * 359.96697 * 8 6 5 10 10 C 1.53744 * 106.43058 * 211.39189 * 9 8 6 11 11 H 1.09006 * 112.72009 * 104.05010 * 10 9 8 12 12 C 1.54449 * 109.01792 * 229.45949 * 10 9 8 13 13 N 1.48336 * 104.32384 * 137.35637 * 12 10 9 14 14 C 1.36938 * 128.19257 * 138.17351 * 13 12 10 15 15 H 1.07997 * 120.00287 * 344.10949 * 14 13 12 16 16 C 1.38811 * 119.99580 * 164.11578 * 14 13 12 17 17 N 1.31621 * 120.00264 * 350.52994 * 16 14 13 18 18 Si 1.86803 * 119.99983 * 170.53454 * 16 14 13 19 19 H 1.48500 * 109.47257 * 89.99982 * 18 16 14 20 20 H 1.48501 * 109.46918 * 209.99573 * 18 16 14 21 21 H 1.48496 * 109.47094 * 329.99422 * 18 16 14 22 22 C 1.48325 * 103.60491 * 318.19540 * 13 12 10 23 23 C 1.54453 * 104.32581 * 41.80420 * 22 13 12 24 24 C 1.53001 * 112.29718 * 97.55253 * 23 22 13 25 25 C 1.47192 * 126.70606 * 180.02562 * 8 6 5 26 26 H 1.08995 * 109.46999 * 300.00210 * 1 2 3 27 27 H 1.09002 * 109.46825 * 60.00450 * 1 2 3 28 28 H 1.08995 * 109.46534 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46528 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47146 * 299.99677 * 3 2 1 31 31 H 1.08997 * 109.46884 * 60.00486 * 3 2 1 32 32 H 0.96699 * 114.00277 * 179.97438 * 4 2 1 33 33 H 1.08989 * 109.47634 * 300.00238 * 5 2 1 34 34 H 1.09001 * 109.47075 * 179.97438 * 5 2 1 35 35 H 1.08999 * 110.06692 * 330.63578 * 9 8 6 36 36 H 1.09007 * 110.06467 * 92.09861 * 9 8 6 37 37 H 1.08997 * 110.46212 * 18.64728 * 12 10 9 38 38 H 1.09001 * 110.46191 * 256.06620 * 12 10 9 39 39 H 0.96995 * 120.00389 * 180.02562 * 17 16 14 40 40 H 1.08998 * 110.46313 * 160.51914 * 22 13 12 41 41 H 1.09004 * 110.46181 * 282.96558 * 22 13 12 42 42 H 1.09007 * 109.47288 * 61.01816 * 24 23 22 43 43 H 1.08997 * 109.47027 * 181.01414 * 24 23 22 44 44 H 1.08993 * 109.47478 * 301.01548 * 24 23 22 45 45 H 1.09001 * 110.06385 * 29.35838 * 25 8 6 46 46 H 1.09004 * 110.10828 * 267.86991 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5378 -2.1421 1.2492 7 8 0.8403 -2.5386 0.3398 8 7 1.8629 -2.9718 2.2603 9 6 2.6942 -2.6482 3.4311 10 6 3.4158 -3.9475 3.8246 11 1 4.4642 -3.9538 3.5261 12 6 3.2367 -4.1834 5.3404 13 7 2.9473 -5.6338 5.4544 14 6 3.4283 -6.5232 6.3780 15 1 4.2883 -6.2660 6.9784 16 6 2.8103 -7.7552 6.5423 17 7 1.6595 -7.9983 5.9516 18 14 3.6120 -9.0682 7.6020 19 1 3.1450 -8.9258 9.0044 20 1 3.2403 -10.4120 7.0907 21 1 5.0878 -8.9108 7.5532 22 6 2.0142 -5.8928 4.3309 23 6 2.6018 -5.0857 3.1523 24 6 3.4500 -5.9533 2.2203 25 6 1.4571 -4.3788 2.4088 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.9704 -0.7115 -1.2331 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 3.4225 -1.8797 3.1718 36 1 2.0655 -2.3051 4.2529 37 1 2.4005 -3.5970 5.7212 38 1 4.1530 -3.9345 5.8757 39 1 1.2275 -8.8591 6.0668 40 1 1.9921 -6.9559 4.0912 41 1 1.0135 -5.5377 4.5771 42 1 2.8302 -6.7422 1.7941 43 1 3.8550 -5.3363 1.4182 44 1 4.2689 -6.3994 2.7843 45 1 1.3122 -4.8318 1.4280 46 1 0.5373 -4.4442 2.9902 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091632747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:21 Heat of formation + Delta-G solvation = -57.652382 kcal Electronic energy + Delta-G solvation = -25400.440116 eV Core-core repulsion = 21904.735293 eV Total energy + Delta-G solvation = -3495.704824 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39882 -39.02835 -37.23566 -34.94399 -32.86379 -32.47671 -31.38522 -29.61539 -28.75114 -27.44326 -26.33370 -25.32748 -25.09520 -22.46068 -20.74465 -20.49251 -19.16130 -18.41214 -17.08761 -16.65413 -16.54938 -15.85282 -15.07285 -14.94002 -14.67898 -14.61420 -14.15279 -13.85467 -13.59596 -13.35071 -12.84546 -12.68368 -12.43096 -12.33245 -12.22239 -12.09474 -11.92224 -11.79409 -11.56148 -11.44620 -11.35590 -10.90893 -10.88734 -10.79494 -10.73065 -10.23025 -10.13431 -10.03880 -9.97581 -9.86641 -9.62999 -9.33108 -8.70942 -8.39056 -6.89233 -5.82173 -3.17078 2.80873 3.16012 3.35738 3.41705 3.43335 4.12067 4.43121 4.47671 4.54728 4.77037 4.86075 4.90703 5.10414 5.18315 5.24337 5.32460 5.39688 5.42336 5.55803 5.62325 5.64989 5.67518 5.72547 5.74210 5.85468 5.93812 5.96174 6.05654 6.13009 6.23711 6.29889 6.33645 6.42247 6.48694 6.65805 6.70564 6.76143 6.93081 7.26050 7.50552 7.62322 7.69052 7.80034 8.17439 8.39257 9.06840 9.70490 10.48494 11.31543 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039119 B = 0.003341 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.586760 B = 8379.708054 C = 8582.719647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 C -0.178 4.178 4 O -0.543 6.543 5 C -0.166 4.166 6 C 0.527 3.473 7 O -0.526 6.526 8 N -0.617 5.617 9 C 0.108 3.892 10 C -0.109 4.109 11 H 0.083 0.917 12 C 0.131 3.869 13 N -0.593 5.593 14 C -0.227 4.227 15 H 0.076 0.924 16 C -0.004 4.004 17 N -0.913 5.913 18 Si 0.910 3.090 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.167 3.833 23 C -0.095 4.095 24 C -0.116 4.116 25 C 0.117 3.883 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.367 0.633 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.048 0.952 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.024 0.976 42 H 0.053 0.947 43 H 0.040 0.960 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 16.274 -8.907 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.103 3.897 3 C -0.236 4.236 4 O -0.347 6.347 5 C -0.206 4.206 6 C 0.316 3.684 7 O -0.402 6.402 8 N -0.351 5.351 9 C -0.016 4.016 10 C -0.130 4.130 11 H 0.102 0.898 12 C 0.004 3.996 13 N -0.316 5.316 14 C -0.355 4.355 15 H 0.093 0.907 16 C -0.201 4.201 17 N -0.560 5.560 18 Si 0.740 3.260 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.041 3.959 23 C -0.097 4.097 24 C -0.174 4.174 25 C -0.005 4.005 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.213 0.787 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.573 15.806 -9.448 18.481 hybrid contribution 1.060 -0.514 0.922 1.496 sum 2.633 15.292 -8.526 17.705 Atomic orbital electron populations 1.21993 0.92337 1.05308 1.01318 1.20903 0.95654 0.89457 0.83637 1.22521 1.01321 0.96747 1.02983 1.86713 1.25621 1.79427 1.42987 1.22457 1.02594 0.94179 1.01383 1.20036 0.80793 0.86857 0.80712 1.90669 1.37877 1.76730 1.34936 1.48724 1.51247 1.12869 1.22226 1.22241 0.93486 0.98013 0.87850 1.23070 0.98724 0.92572 0.98637 0.89817 1.21856 0.98055 0.88089 0.91581 1.45049 1.53467 1.01976 1.31102 1.18958 1.08237 0.94923 1.13395 0.90660 1.24886 0.96143 0.99036 1.00082 1.69880 1.15708 1.23229 1.47134 0.86157 0.78684 0.81273 0.79837 1.21499 1.21561 1.20594 1.21768 0.90767 0.99907 0.83461 1.22529 0.94503 0.95729 0.96961 1.21535 0.99684 0.98514 0.97624 1.22194 0.97518 0.80077 1.00743 0.92073 0.92405 0.88898 0.92365 0.91517 0.91521 0.78670 0.88353 0.89007 0.91472 0.91148 0.95582 0.93329 0.93540 0.89109 0.95850 0.92804 0.94069 0.91926 0.90851 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.52 37.16 0.32 -1.45 16 2 C 0.14 1.50 0.98 -90.62 -0.09 1.41 16 3 C -0.18 -1.32 8.82 37.16 0.33 -0.99 16 4 O -0.54 -6.64 11.88 -53.49 -0.64 -7.27 16 5 C -0.17 -1.69 3.93 -27.88 -0.11 -1.80 16 6 C 0.53 7.72 7.44 -10.98 -0.08 7.64 16 7 O -0.53 -9.54 13.19 -12.70 -0.17 -9.71 16 8 N -0.62 -9.18 3.32 -171.67 -0.57 -9.75 16 9 C 0.11 1.41 6.38 -3.28 -0.02 1.39 16 10 C -0.11 -1.75 3.75 -88.28 -0.33 -2.08 16 11 H 0.08 1.28 7.95 -51.93 -0.41 0.87 16 12 C 0.13 2.50 6.76 -2.27 -0.02 2.48 16 13 N -0.59 -14.34 3.37 -168.48 -0.57 -14.91 16 14 C -0.23 -6.07 10.37 -15.06 -0.16 -6.23 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 16 C 0.00 -0.11 5.40 -17.43 -0.09 -0.21 16 17 N -0.91 -26.10 10.89 55.49 0.60 -25.49 16 18 Si 0.91 21.44 29.56 -169.99 -5.03 16.42 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.17 3.80 5.11 -2.27 -0.01 3.79 16 23 C -0.09 -1.70 1.08 -152.19 -0.16 -1.86 16 24 C -0.12 -1.99 8.61 37.16 0.32 -1.67 16 25 C 0.12 1.99 6.21 -3.29 -0.02 1.97 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.38 5.51 -51.93 -0.29 1.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.37 3.07 9.05 45.56 0.41 3.49 16 33 H 0.10 0.84 8.14 -51.94 -0.42 0.42 16 34 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 35 H 0.07 0.69 7.31 -51.93 -0.38 0.31 16 36 H 0.07 0.91 7.11 -51.93 -0.37 0.54 16 37 H 0.03 0.50 7.17 -51.93 -0.37 0.12 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.09 2.34 6.23 -51.93 -0.32 2.02 16 41 H 0.02 0.57 7.17 -51.93 -0.37 0.19 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.29 7.61 -51.93 -0.40 0.89 16 46 H 0.07 1.22 7.11 -51.93 -0.37 0.85 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -31.98 354.52 -8.20 -40.18 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.05 Total: 2.79 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.13 Total: 2.40 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.53 Total: -50.15 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.80 Total: -16.98 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.98 -8.20 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091632747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.476 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds