Wall clock time and date at job start Tue Mar 31 2020 03:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46761 * 2 1 4 4 O 1.42898 * 109.47247 * 239.99967 * 2 1 3 5 5 C 1.52997 * 109.47000 * 119.99671 * 2 1 3 6 6 C 1.50703 * 109.47054 * 60.00758 * 5 2 1 7 7 O 1.21281 * 119.99786 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00288 * 180.02562 * 6 5 2 9 9 C 1.47194 * 126.69952 * 359.96697 * 8 6 5 10 10 C 1.53744 * 106.43058 * 211.39189 * 9 8 6 11 11 H 1.09006 * 112.72009 * 104.05010 * 10 9 8 12 12 C 1.54449 * 109.01792 * 229.45949 * 10 9 8 13 13 N 1.48336 * 104.32384 * 137.35637 * 12 10 9 14 14 C 1.36938 * 128.19257 * 138.17351 * 13 12 10 15 15 H 1.07997 * 120.00287 * 344.10949 * 14 13 12 16 16 C 1.38811 * 119.99580 * 164.11578 * 14 13 12 17 17 N 1.31621 * 120.00264 * 350.52994 * 16 14 13 18 18 Si 1.86803 * 119.99983 * 170.53454 * 16 14 13 19 19 H 1.48500 * 109.47257 * 89.99982 * 18 16 14 20 20 H 1.48501 * 109.46918 * 209.99573 * 18 16 14 21 21 H 1.48496 * 109.47094 * 329.99422 * 18 16 14 22 22 C 1.48325 * 103.60491 * 318.19540 * 13 12 10 23 23 C 1.54453 * 104.32581 * 41.80420 * 22 13 12 24 24 C 1.53001 * 112.29718 * 97.55253 * 23 22 13 25 25 C 1.47192 * 126.70606 * 180.02562 * 8 6 5 26 26 H 1.08995 * 109.46999 * 300.00210 * 1 2 3 27 27 H 1.09002 * 109.46825 * 60.00450 * 1 2 3 28 28 H 1.08995 * 109.46534 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46528 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47146 * 299.99677 * 3 2 1 31 31 H 1.08997 * 109.46884 * 60.00486 * 3 2 1 32 32 H 0.96699 * 114.00277 * 179.97438 * 4 2 1 33 33 H 1.08989 * 109.47634 * 300.00238 * 5 2 1 34 34 H 1.09001 * 109.47075 * 179.97438 * 5 2 1 35 35 H 1.08999 * 110.06692 * 330.63578 * 9 8 6 36 36 H 1.09007 * 110.06467 * 92.09861 * 9 8 6 37 37 H 1.08997 * 110.46212 * 18.64728 * 12 10 9 38 38 H 1.09001 * 110.46191 * 256.06620 * 12 10 9 39 39 H 0.96995 * 120.00389 * 180.02562 * 17 16 14 40 40 H 1.08998 * 110.46313 * 160.51914 * 22 13 12 41 41 H 1.09004 * 110.46181 * 282.96558 * 22 13 12 42 42 H 1.09007 * 109.47288 * 61.01816 * 24 23 22 43 43 H 1.08997 * 109.47027 * 181.01414 * 24 23 22 44 44 H 1.08993 * 109.47478 * 301.01548 * 24 23 22 45 45 H 1.09001 * 110.06385 * 29.35838 * 25 8 6 46 46 H 1.09004 * 110.10828 * 267.86991 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5378 -2.1421 1.2492 7 8 0.8403 -2.5386 0.3398 8 7 1.8629 -2.9718 2.2603 9 6 2.6942 -2.6482 3.4311 10 6 3.4158 -3.9475 3.8246 11 1 4.4642 -3.9538 3.5261 12 6 3.2367 -4.1834 5.3404 13 7 2.9473 -5.6338 5.4544 14 6 3.4283 -6.5232 6.3780 15 1 4.2883 -6.2660 6.9784 16 6 2.8103 -7.7552 6.5423 17 7 1.6595 -7.9983 5.9516 18 14 3.6120 -9.0682 7.6020 19 1 3.1450 -8.9258 9.0044 20 1 3.2403 -10.4120 7.0907 21 1 5.0878 -8.9108 7.5532 22 6 2.0142 -5.8928 4.3309 23 6 2.6018 -5.0857 3.1523 24 6 3.4500 -5.9533 2.2203 25 6 1.4571 -4.3788 2.4088 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.9704 -0.7115 -1.2331 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 3.4225 -1.8797 3.1718 36 1 2.0655 -2.3051 4.2529 37 1 2.4005 -3.5970 5.7212 38 1 4.1530 -3.9345 5.8757 39 1 1.2275 -8.8591 6.0668 40 1 1.9921 -6.9559 4.0912 41 1 1.0135 -5.5377 4.5771 42 1 2.8302 -6.7422 1.7941 43 1 3.8550 -5.3363 1.4182 44 1 4.2689 -6.3994 2.7843 45 1 1.3122 -4.8318 1.4280 46 1 0.5373 -4.4442 2.9902 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091632747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:21 Heat of formation + Delta-G solvation = -79.189823 kcal Electronic energy + Delta-G solvation = -25401.374050 eV Core-core repulsion = 21904.735293 eV Total energy + Delta-G solvation = -3496.638757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62592 -40.20532 -38.26570 -36.48739 -34.28845 -33.60839 -32.92984 -31.15930 -29.73166 -28.14560 -27.99728 -26.79950 -26.56699 -23.97349 -22.18243 -21.51720 -20.30667 -19.82101 -18.74627 -17.90547 -17.58892 -16.97043 -16.63217 -16.18008 -15.89157 -15.76101 -15.35478 -15.30049 -15.00813 -14.78133 -14.21413 -13.86773 -13.62155 -13.33507 -13.23609 -13.20087 -13.06722 -12.97619 -12.90422 -12.71464 -12.65481 -12.49196 -12.34934 -12.34037 -11.88514 -11.72035 -11.64767 -11.51960 -11.48082 -11.26741 -11.01098 -10.71244 -10.47059 -9.62030 -8.84923 -7.87868 -5.23605 1.47546 1.48713 1.57743 1.72492 2.03875 2.50593 3.32041 3.33923 3.47972 3.54480 3.71232 3.83315 3.93934 3.99469 4.08326 4.22003 4.26204 4.30877 4.41961 4.53934 4.60888 4.62579 4.69725 4.76648 4.80688 4.85608 4.93885 4.94466 4.99292 5.03416 5.07725 5.12943 5.20920 5.24372 5.28950 5.34992 5.48159 5.48926 5.50584 5.56507 5.73859 6.21809 6.67869 7.00399 7.03429 7.28105 7.72309 8.52045 9.25307 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039119 B = 0.003341 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.586760 B = 8379.708054 C = 8582.719647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 C -0.169 4.169 4 O -0.572 6.572 5 C -0.156 4.156 6 C 0.522 3.478 7 O -0.567 6.567 8 N -0.617 5.617 9 C 0.113 3.887 10 C -0.097 4.097 11 H 0.102 0.898 12 C 0.128 3.872 13 N -0.619 5.619 14 C -0.232 4.232 15 H 0.083 0.917 16 C -0.063 4.063 17 N -0.948 5.948 18 Si 0.974 3.026 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.267 1.267 22 C 0.175 3.825 23 C -0.086 4.086 24 C -0.109 4.109 25 C 0.124 3.876 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.382 0.618 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.061 0.939 39 H 0.247 0.753 40 H 0.051 0.949 41 H -0.003 1.003 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 19.292 -8.790 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.099 3.901 3 C -0.226 4.226 4 O -0.379 6.379 5 C -0.196 4.196 6 C 0.313 3.687 7 O -0.446 6.446 8 N -0.350 5.350 9 C -0.009 4.009 10 C -0.118 4.118 11 H 0.120 0.880 12 C 0.003 3.997 13 N -0.342 5.342 14 C -0.361 4.361 15 H 0.101 0.899 16 C -0.257 4.257 17 N -0.596 5.596 18 Si 0.802 3.198 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.192 1.192 22 C 0.049 3.951 23 C -0.089 4.089 24 C -0.166 4.166 25 C 0.000 4.000 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.230 0.770 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.015 0.985 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.990 18.879 -9.324 21.431 hybrid contribution 0.265 -1.427 0.872 1.694 sum 4.255 17.452 -8.452 19.852 Atomic orbital electron populations 1.22003 0.94046 1.03013 1.02217 1.21029 0.94579 0.91234 0.83248 1.22422 1.02482 0.94214 1.03512 1.86681 1.27195 1.80033 1.44022 1.22528 1.04353 0.90477 1.02250 1.20962 0.79843 0.88357 0.79548 1.90675 1.39650 1.77791 1.36522 1.48780 1.51508 1.11675 1.23075 1.22303 0.93995 0.97269 0.87353 1.22995 0.99761 0.93133 0.95891 0.87996 1.22070 0.98617 0.85047 0.94013 1.45341 1.53456 1.04294 1.31129 1.19359 1.08090 0.95493 1.13188 0.89932 1.25677 0.96841 1.01224 1.01945 1.70084 1.17267 1.23175 1.49049 0.85153 0.78378 0.78208 0.78019 1.21336 1.22417 1.19185 1.21519 0.90016 0.98232 0.85329 1.22325 0.95126 0.96002 0.95454 1.21455 0.98872 0.98519 0.97785 1.21878 0.96506 0.82053 0.99556 0.90132 0.92643 0.92650 0.90435 0.92038 0.89997 0.76972 0.85838 0.85847 0.86835 0.90598 0.95218 0.92015 0.94383 0.93035 0.98487 0.93593 0.91692 0.93326 0.91957 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.52 71.98 0.61 -2.79 16 2 C 0.14 2.49 0.98 -10.79 -0.01 2.48 16 3 C -0.17 -1.80 8.82 71.98 0.63 -1.16 16 4 O -0.57 -12.90 11.88 -131.52 -1.56 -14.46 16 5 C -0.16 -2.49 3.93 29.85 0.12 -2.38 16 6 C 0.52 14.11 7.44 87.66 0.65 14.76 16 7 O -0.57 -20.48 13.19 14.42 0.19 -20.29 16 8 N -0.62 -16.94 3.32 -815.44 -2.71 -19.64 16 9 C 0.11 2.50 6.38 86.50 0.55 3.06 16 10 C -0.10 -2.85 3.75 -9.28 -0.03 -2.88 16 11 H 0.10 2.69 7.95 -2.38 -0.02 2.67 16 12 C 0.13 4.65 6.76 86.52 0.58 5.24 16 13 N -0.62 -30.15 3.37 -686.95 -2.32 -32.46 16 14 C -0.23 -12.52 10.37 84.03 0.87 -11.64 16 15 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 16 C -0.06 -3.52 5.40 84.86 0.46 -3.07 16 17 N -0.95 -56.47 10.89 21.65 0.24 -56.24 16 18 Si 0.97 44.81 29.56 68.60 2.03 46.84 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.18 8.29 5.11 86.52 0.44 8.73 16 23 C -0.09 -3.08 1.08 -50.68 -0.05 -3.13 16 24 C -0.11 -3.69 8.61 71.98 0.62 -3.07 16 25 C 0.12 4.22 6.21 86.49 0.54 4.75 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.66 5.51 -2.39 -0.01 1.64 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.38 5.39 9.05 -74.06 -0.67 4.72 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.25 7.86 -2.39 -0.02 1.24 16 35 H 0.11 1.57 7.31 -2.39 -0.02 1.55 16 36 H 0.08 1.66 7.11 -2.38 -0.02 1.64 16 37 H 0.03 1.07 7.17 -2.39 -0.02 1.06 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 40 H 0.05 2.82 6.23 -2.39 -0.01 2.81 16 41 H 0.00 -0.14 7.17 -2.39 -0.02 -0.16 16 42 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.06 2.24 7.61 -2.39 -0.02 2.23 16 46 H 0.05 1.91 7.11 -2.39 -0.02 1.89 16 Total: -1.00 -73.75 354.52 2.15 -71.60 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.29 Total: 15.77 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.98 Total: 8.88 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -4.79 Total: -108.34 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.37 Total: -34.75 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -73.75 2.15 -71.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091632747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.589 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds