Wall clock time and date at job start Tue Mar 31 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.91760 * 2 1 4 4 C 1.54912 * 111.00501 * 236.09871 * 2 1 3 5 5 N 1.47414 * 104.83310 * 204.91537 * 4 2 1 6 6 C 1.36942 * 125.64780 * 204.09443 * 5 4 2 7 7 H 1.07999 * 119.99838 * 180.02562 * 6 5 4 8 8 C 1.38808 * 119.99895 * 0.04032 * 6 5 4 9 9 N 1.31620 * 120.00410 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99860 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47214 * 60.00539 * 10 8 6 12 12 H 1.48503 * 109.46879 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47529 * 300.00376 * 10 8 6 14 14 C 1.47019 * 108.70803 * 24.12997 * 5 4 2 15 15 C 1.54329 * 107.26572 * 358.94202 * 14 5 4 16 16 H 1.08991 * 110.72375 * 96.34793 * 15 14 5 17 17 C 1.53005 * 110.71778 * 219.44385 * 15 14 5 18 18 N 1.46495 * 109.47195 * 293.54581 * 17 15 14 19 19 C 1.34778 * 120.00467 * 180.02562 * 18 17 15 20 20 O 1.21281 * 119.99571 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00207 * 179.97438 * 19 18 17 22 22 H 1.08996 * 110.60545 * 317.21704 * 21 19 18 23 23 C 1.54104 * 110.54810 * 80.00309 * 21 19 18 24 24 N 1.47054 * 103.86470 * 118.59127 * 23 21 19 25 25 C 1.33945 * 109.17868 * 0.26673 * 24 23 21 26 26 O 1.21582 * 123.04490 * 179.74026 * 25 24 23 27 27 N 1.33951 * 113.91634 * 359.52209 * 25 24 23 28 28 H 1.08999 * 109.47486 * 296.09272 * 1 2 3 29 29 H 1.09004 * 109.47535 * 56.09633 * 1 2 3 30 30 H 1.09005 * 109.47080 * 176.09733 * 1 2 3 31 31 H 1.09007 * 110.36344 * 86.07667 * 4 2 1 32 32 H 1.08997 * 110.36632 * 323.75997 * 4 2 1 33 33 H 0.97001 * 120.00324 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.88667 * 239.52834 * 14 5 4 35 35 H 1.09001 * 110.01669 * 118.42571 * 14 5 4 36 36 H 1.09002 * 109.47066 * 173.54458 * 17 15 14 37 37 H 1.09000 * 109.47209 * 53.54201 * 17 15 14 38 38 H 0.97003 * 120.00001 * 359.97438 * 18 17 15 39 39 H 1.09003 * 110.54793 * 359.97438 * 23 21 19 40 40 H 1.09001 * 110.66763 * 237.24911 * 23 21 19 41 41 H 0.97001 * 125.40780 * 179.97438 * 24 23 21 42 42 H 0.96997 * 125.41254 * 180.21089 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4270 -1.2430 -0.7734 6 6 4.4639 -1.5666 -1.6073 7 1 5.4124 -1.8768 -1.1943 8 6 4.2960 -1.4956 -2.9834 9 7 3.1404 -1.1167 -3.4867 10 14 5.7107 -1.9363 -4.1209 11 1 6.1183 -3.3440 -3.8815 12 1 5.2780 -1.7790 -5.5327 13 1 6.8605 -1.0357 -3.8528 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2021 16 1 1.4478 -1.6632 1.4238 17 6 2.2349 0.0875 2.4338 18 7 2.7615 -0.7013 3.5503 19 6 2.9753 -0.1176 4.7462 20 8 2.7323 1.0609 4.8977 21 6 3.5164 -0.9292 5.8949 22 1 3.0257 -1.9012 5.9425 23 6 5.0426 -1.0993 5.7653 24 7 5.5732 -0.4519 6.9744 25 6 4.5539 0.0180 7.7053 26 8 4.7082 0.5973 8.7630 27 7 3.3492 -0.2039 7.1632 28 1 -0.3634 0.4520 0.9229 29 1 -0.3634 0.5732 -0.8529 30 1 -0.3633 -1.0253 -0.0699 31 1 2.1559 -0.1719 -2.0837 32 1 1.4518 -1.6703 -1.4025 33 1 3.0232 -1.0668 -4.4483 34 1 4.2425 -0.5997 1.0599 35 1 3.6662 -2.2884 1.0423 36 1 1.2618 0.4968 2.7051 37 1 2.9223 0.9030 2.2091 38 1 2.9555 -1.6440 3.4292 39 1 5.4089 -0.5971 4.8699 40 1 5.3118 -2.1554 5.7473 41 1 6.5120 -0.3806 7.2077 42 1 2.5011 0.0670 7.5481 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092928590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:10 Heat of formation + Delta-G solvation = -59.104228 kcal Electronic energy + Delta-G solvation = -24102.582914 eV Core-core repulsion = 20503.274791 eV Total energy + Delta-G solvation = -3599.308124 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.33009 -40.52057 -39.45545 -37.37113 -36.06608 -34.66093 -34.00077 -32.51915 -31.37700 -29.75049 -27.79468 -26.62030 -25.09470 -24.04689 -22.82394 -21.93588 -21.38057 -20.73470 -19.15608 -18.84870 -18.46217 -17.43448 -17.14093 -16.81163 -16.58905 -16.35378 -15.76684 -15.56911 -15.34292 -15.06686 -14.80946 -14.60472 -14.31763 -14.02034 -13.88617 -13.48532 -13.34369 -13.25817 -12.91813 -12.74414 -12.61945 -12.42757 -11.98340 -11.80425 -11.59874 -11.58028 -11.40546 -11.34672 -11.07002 -10.70034 -10.54660 -10.09303 -9.82413 -8.83031 -7.73763 -5.17542 1.43247 1.48820 1.51177 1.57406 1.69692 1.98109 2.23056 2.52248 3.06544 3.32979 3.35879 3.57215 3.70214 3.85695 3.95627 4.02724 4.03251 4.36954 4.42930 4.54722 4.66068 4.66890 4.73192 4.79749 4.87148 4.90772 5.03490 5.13780 5.21201 5.37874 5.43294 5.46850 5.55509 5.76242 5.89011 5.91237 6.21057 6.28184 6.36010 6.55284 7.14923 7.19294 7.51753 7.84130 8.47028 9.27471 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.003228 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.834260 B = 8672.023153 C = 9752.860022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 H 0.062 0.938 4 C 0.162 3.838 5 N -0.630 5.630 6 C -0.236 4.236 7 H 0.083 0.917 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.976 3.024 11 H -0.276 1.276 12 H -0.297 1.297 13 H -0.279 1.279 14 C 0.137 3.863 15 C -0.089 4.089 16 H 0.100 0.900 17 C 0.144 3.856 18 N -0.704 5.704 19 C 0.500 3.500 20 O -0.577 6.577 21 C 0.108 3.892 22 H 0.167 0.833 23 C 0.101 3.899 24 N -0.731 5.731 25 C 0.695 3.305 26 O -0.640 6.640 27 N -0.714 5.714 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.064 0.936 32 H -0.009 1.009 33 H 0.245 0.755 34 H 0.023 0.977 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.420 0.580 39 H 0.087 0.913 40 H 0.143 0.857 41 H 0.440 0.560 42 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -4.959 16.464 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.080 0.920 4 C 0.037 3.963 5 N -0.355 5.355 6 C -0.365 4.365 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.202 1.202 12 H -0.224 1.224 13 H -0.205 1.205 14 C 0.012 3.988 15 C -0.108 4.108 16 H 0.118 0.882 17 C 0.020 3.980 18 N -0.356 5.356 19 C 0.285 3.715 20 O -0.456 6.456 21 C -0.001 4.001 22 H 0.184 0.816 23 C -0.024 4.024 24 N -0.394 5.394 25 C 0.393 3.607 26 O -0.522 6.522 27 N -0.374 5.374 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.009 0.991 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.258 0.742 39 H 0.105 0.895 40 H 0.160 0.840 41 H 0.283 0.717 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -1.602 -3.877 16.847 17.361 hybrid contribution 0.739 -0.172 -1.089 1.328 sum -0.862 -4.049 15.757 16.292 Atomic orbital electron populations 1.21604 0.92956 1.01965 1.02020 1.22430 0.96609 0.98298 0.94949 0.91973 1.21739 0.83902 0.94868 0.95829 1.44796 1.10325 1.79000 1.01416 1.19429 0.92089 1.37049 0.87975 0.89925 1.25599 0.99534 1.02716 0.98251 1.70057 1.24184 1.55000 1.10692 0.85180 0.78571 0.78243 0.77513 1.20210 1.22373 1.20525 1.21538 0.95486 0.98091 0.83677 1.22339 0.96679 0.98567 0.93180 0.88178 1.21173 0.99047 0.93335 0.84436 1.45864 1.65159 1.14775 1.09832 1.21282 0.77798 0.87856 0.84546 1.90757 1.52914 1.18125 1.83770 1.22168 0.98471 0.97340 0.82126 0.81612 1.22605 0.88712 1.02433 0.88615 1.45072 1.08702 1.61907 1.23681 1.16178 0.82636 0.78783 0.83099 1.90952 1.85737 1.50151 1.25386 1.44852 1.07805 1.62306 1.22463 0.90804 0.93139 0.92530 0.91791 0.99133 0.94522 0.95945 0.94459 0.90777 0.93268 0.74249 0.89455 0.83956 0.71718 0.72262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.31 71.98 0.67 -2.73 16 2 C -0.10 -3.41 3.09 -9.40 -0.03 -3.44 16 3 H 0.06 2.18 8.05 -2.39 -0.02 2.16 16 4 C 0.16 7.48 5.36 86.86 0.47 7.94 16 5 N -0.63 -30.15 3.39 -692.00 -2.35 -32.50 16 6 C -0.24 -12.61 10.27 84.03 0.86 -11.74 16 7 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 8 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 9 N -0.95 -55.31 10.09 21.65 0.22 -55.09 16 10 Si 0.98 44.25 29.55 68.60 2.03 46.28 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 14 C 0.14 4.71 6.52 86.73 0.57 5.28 16 15 C -0.09 -2.36 2.48 -9.60 -0.02 -2.39 16 16 H 0.10 2.30 8.04 -2.39 -0.02 2.28 16 17 C 0.14 3.28 4.99 86.38 0.43 3.71 16 18 N -0.70 -11.21 5.40 -463.06 -2.50 -13.71 16 19 C 0.50 9.26 6.95 87.66 0.61 9.87 16 20 O -0.58 -17.03 16.56 -3.03 -0.05 -17.08 16 21 C 0.11 1.18 4.17 44.51 0.19 1.36 16 22 H 0.17 0.29 8.14 -2.39 -0.02 0.27 16 23 C 0.10 0.86 7.70 86.65 0.67 1.52 16 24 N -0.73 -10.95 6.37 -477.34 -3.04 -14.00 16 25 C 0.69 16.22 8.92 179.57 1.60 17.82 16 26 O -0.64 -21.38 18.05 -3.97 -0.07 -21.45 16 27 N -0.71 -12.65 5.60 -460.34 -2.58 -15.23 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.06 1.47 8.07 -2.38 -0.02 1.45 16 31 H 0.06 3.51 5.87 -2.38 -0.01 3.49 16 32 H -0.01 -0.46 7.98 -2.39 -0.02 -0.48 16 33 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.02 0.79 7.76 -2.39 -0.02 0.77 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.37 8.06 -2.39 -0.02 1.35 16 38 H 0.42 4.03 8.33 -92.71 -0.77 3.26 16 39 H 0.09 0.86 7.72 -2.39 -0.02 0.84 16 40 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.44 5.22 8.96 -92.71 -0.83 4.39 16 42 H 0.43 7.36 8.96 -92.71 -0.83 6.53 16 Total: -1.00 -82.03 344.41 -3.25 -85.27 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -1.37 Total: 13.59 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.47 Total: 23.90 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -10.25 Total: -130.52 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.12 Total: -38.53 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -82.03 -3.25 -85.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092928590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.169 kcal (2) G-P(sol) polarization free energy of solvation -82.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds