Wall clock time and date at job start Tue Mar 31 2020 03:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00244 * 2 1 4 4 C 1.50703 * 120.00089 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47124 * 125.46117 * 4 2 1 6 6 C 1.53002 * 109.46976 * 5.46138 * 4 2 1 7 7 C 1.50697 * 109.46991 * 245.46043 * 4 2 1 8 8 O 1.21274 * 120.00114 * 5.88204 * 7 4 2 9 9 N 1.34774 * 119.99777 * 185.88132 * 7 4 2 10 10 C 1.46500 * 120.00066 * 180.02562 * 9 7 4 11 11 H 1.09006 * 109.44870 * 325.02943 * 10 9 7 12 12 C 1.53039 * 109.46579 * 84.99685 * 10 9 7 13 13 C 1.53188 * 109.34366 * 181.40461 * 12 10 9 14 14 N 1.46921 * 108.77301 * 305.34895 * 13 12 10 15 15 C 1.36944 * 120.62840 * 233.58462 * 14 13 12 16 16 H 1.07997 * 119.99761 * 30.28080 * 15 14 13 17 17 C 1.38816 * 120.00071 * 210.27685 * 15 14 13 18 18 N 1.31622 * 119.99789 * 12.26265 * 17 15 14 19 19 Si 1.86797 * 120.00251 * 192.26376 * 17 15 14 20 20 H 1.48502 * 109.46858 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46998 * 119.99598 * 19 17 15 22 22 H 1.48495 * 109.47160 * 240.00198 * 19 17 15 23 23 C 1.46928 * 118.74239 * 53.61113 * 14 13 12 24 24 C 1.53104 * 109.50590 * 205.05226 * 10 9 7 25 25 H 1.09002 * 109.49143 * 58.67186 * 24 10 9 26 26 O 1.42904 * 109.51530 * 298.59860 * 24 10 9 27 27 H 1.08002 * 119.99873 * 354.27383 * 1 2 3 28 28 H 1.08006 * 120.00016 * 174.28250 * 1 2 3 29 29 H 1.08997 * 109.47525 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47170 * 300.00922 * 3 2 1 31 31 H 1.09003 * 109.46995 * 60.00223 * 3 2 1 32 32 H 1.09003 * 109.47114 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47206 * 299.99799 * 5 4 2 34 34 H 1.08992 * 109.47247 * 59.99971 * 5 4 2 35 35 H 1.08999 * 109.46790 * 299.99861 * 6 4 2 36 36 H 1.09002 * 109.47333 * 60.00212 * 6 4 2 37 37 H 1.09003 * 109.47146 * 179.97438 * 6 4 2 38 38 H 0.97000 * 120.00387 * 359.97438 * 9 7 4 39 39 H 1.08997 * 109.49804 * 61.43006 * 12 10 9 40 40 H 1.08999 * 109.49361 * 301.37602 * 12 10 9 41 41 H 1.09005 * 109.58518 * 65.13667 * 13 12 10 42 42 H 1.09004 * 109.58767 * 185.55753 * 13 12 10 43 43 H 0.96996 * 119.99812 * 179.97438 * 18 17 15 44 44 H 1.08993 * 109.58633 * 66.17605 * 23 14 13 45 45 H 1.09002 * 109.58765 * 186.60717 * 23 14 13 46 46 H 0.96698 * 113.99852 * 180.12549 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 3.0432 -1.3278 -1.1756 6 6 1.0749 -2.4647 -0.1384 7 6 2.8256 -1.4456 1.2918 8 8 2.6803 -0.6260 2.1737 9 7 3.6688 -2.4823 1.4675 10 6 4.4094 -2.6192 2.7241 11 1 4.6707 -1.6304 3.1011 12 6 3.5382 -3.3432 3.7532 13 6 4.3019 -3.4538 5.0765 14 7 5.5971 -4.0993 4.8225 15 6 5.9782 -5.2037 5.5368 16 1 5.2321 -5.8909 5.9076 17 6 7.3236 -5.4400 5.7842 18 7 8.2112 -4.4967 5.5505 19 14 7.8741 -7.0967 6.4488 20 1 6.6915 -7.9776 6.6238 21 1 8.8208 -7.7241 5.4920 22 1 8.5477 -6.9056 7.7583 23 6 6.4758 -3.5370 3.7879 24 6 5.6876 -3.4255 2.4789 25 1 6.2973 -2.9214 1.7290 26 8 5.3456 -4.7332 2.0152 27 1 -0.5400 0.9307 0.0933 28 1 -0.5400 -0.9307 -0.0932 29 1 3.1351 1.1059 -0.0005 30 1 1.8000 1.8767 -0.8899 31 1 1.8002 1.8766 0.8900 32 1 3.5879 -2.2720 -1.1762 33 1 2.4919 -1.2262 -2.1104 34 1 3.7474 -0.5018 -1.0774 35 1 0.3769 -2.4485 0.6987 36 1 0.5236 -2.3631 -1.0732 37 1 1.6199 -3.4087 -0.1393 38 1 3.7848 -3.1381 0.7623 39 1 3.2970 -4.3414 3.3878 40 1 2.6176 -2.7811 3.9103 41 1 4.4645 -2.4580 5.4889 42 1 3.7265 -4.0540 5.7815 43 1 9.1512 -4.6617 5.7237 44 1 6.8157 -2.5481 4.0951 45 1 7.3348 -4.1921 3.6424 46 1 6.1089 -5.3008 1.8409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099947264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:28 Heat of formation + Delta-G solvation = -53.662276 kcal Electronic energy + Delta-G solvation = -25553.013017 eV Core-core repulsion = 22057.481217 eV Total energy + Delta-G solvation = -3495.531800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.34442 -38.30969 -36.55671 -34.78869 -34.33795 -32.51745 -31.54791 -29.28521 -28.98869 -28.67305 -26.09338 -25.25667 -23.79801 -22.34885 -21.85096 -20.20426 -19.52134 -18.06600 -17.19158 -16.42766 -16.24315 -15.63095 -15.23519 -15.04749 -14.75812 -14.30203 -13.94129 -13.74990 -13.71247 -13.25815 -13.11936 -12.88643 -12.56768 -12.40018 -12.34395 -12.18367 -12.07770 -11.97906 -11.84114 -11.24928 -11.13488 -11.05988 -10.82653 -10.80863 -10.56865 -10.47121 -10.15465 -10.01336 -9.74967 -9.50613 -9.19737 -9.00026 -8.64515 -8.50675 -6.64450 -5.81748 -3.26516 2.12077 2.85648 3.34050 3.42772 3.45377 3.50809 4.38893 4.46532 4.63378 4.74759 4.85467 5.00427 5.14226 5.32352 5.36626 5.40941 5.46061 5.47803 5.53896 5.57387 5.59173 5.60451 5.67025 5.83052 5.92559 5.97268 5.99509 6.04501 6.06464 6.23817 6.31972 6.47905 6.53705 6.58527 6.79105 6.80709 6.90225 7.01071 7.18480 7.45951 7.76718 7.82016 8.24449 8.44348 8.48706 9.18379 9.80071 10.38111 11.26741 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033989 B = 0.003566 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.596935 B = 7850.489293 C = 7932.494925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.050 4.050 5 C -0.139 4.139 6 C -0.142 4.142 7 C 0.521 3.479 8 O -0.537 6.537 9 N -0.717 5.717 10 C 0.163 3.837 11 H 0.089 0.911 12 C -0.135 4.135 13 C 0.148 3.852 14 N -0.583 5.583 15 C -0.242 4.242 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.909 5.909 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.146 3.854 24 C 0.073 3.927 25 H 0.042 0.958 26 O -0.560 6.560 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.097 0.903 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 5.762 -15.144 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.088 4.088 3 C -0.169 4.169 4 C -0.053 4.053 5 C -0.197 4.197 6 C -0.199 4.199 7 C 0.306 3.694 8 O -0.414 6.414 9 N -0.367 5.367 10 C 0.059 3.941 11 H 0.107 0.893 12 C -0.176 4.176 13 C 0.021 3.979 14 N -0.305 5.305 15 C -0.371 4.371 16 H 0.083 0.917 17 C -0.198 4.198 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.019 3.981 24 C 0.012 3.988 25 H 0.060 0.940 26 O -0.366 6.366 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.235 0.765 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.115 0.885 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.844 6.571 -14.374 19.167 hybrid contribution 1.041 -1.329 0.009 1.689 sum -9.804 5.241 -14.365 18.164 Atomic orbital electron populations 1.23730 0.95216 1.02141 1.03016 1.21228 0.94890 0.94042 0.98667 1.20764 1.00128 0.94425 1.01562 1.19863 0.96104 0.95106 0.94245 1.21866 0.98468 1.02664 0.96668 1.21921 0.98812 0.96491 1.02674 1.20302 0.79505 0.81208 0.88346 1.90686 1.64519 1.42200 1.43951 1.46209 1.44217 1.27178 1.19105 1.20997 0.90759 0.98784 0.83556 0.89344 1.22287 0.97815 1.00351 0.97100 1.20901 0.87784 0.95906 0.93306 1.43857 1.15886 1.31748 1.39037 1.19237 0.91263 0.98724 1.27922 0.91720 1.25111 0.96970 0.97826 0.99903 1.69977 1.01299 1.31269 1.52916 0.86176 0.78374 0.83668 0.78292 1.20270 1.21662 1.21739 1.21451 0.93377 0.98550 0.84727 1.22865 0.94764 0.83317 0.97886 0.94024 1.86341 1.36893 1.25008 1.88311 0.88406 0.87938 0.92192 0.91998 0.91240 0.91798 0.91436 0.91778 0.91659 0.91273 0.91659 0.76542 0.91302 0.93013 0.96295 0.92505 0.93689 0.95529 0.88506 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 13.34 29.02 0.39 -1.74 16 2 C -0.09 -1.01 4.28 -101.06 -0.43 -1.45 16 3 C -0.11 -1.24 9.03 36.01 0.33 -0.91 16 4 C -0.05 -0.57 0.69 -156.81 -0.11 -0.68 16 5 C -0.14 -1.28 8.09 37.16 0.30 -0.98 16 6 C -0.14 -1.38 7.09 37.16 0.26 -1.12 16 7 C 0.52 7.87 6.32 -10.99 -0.07 7.80 16 8 O -0.54 -10.12 15.25 5.56 0.08 -10.03 16 9 N -0.72 -10.63 4.89 -53.74 -0.26 -10.90 16 10 C 0.16 2.91 2.20 -67.86 -0.15 2.77 16 11 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 12 C -0.14 -2.60 5.51 -26.61 -0.15 -2.75 16 13 C 0.15 3.24 6.52 -3.72 -0.02 3.22 16 14 N -0.58 -14.39 2.93 -172.32 -0.51 -14.90 16 15 C -0.24 -6.53 9.59 -15.05 -0.14 -6.67 16 16 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 17 C 0.00 -0.01 5.02 -17.43 -0.09 -0.10 16 18 N -0.91 -25.63 11.06 55.49 0.61 -25.02 16 19 Si 0.90 21.34 29.57 -169.99 -5.03 16.31 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.15 3.32 4.91 -3.71 -0.02 3.30 16 24 C 0.07 1.32 3.38 -26.58 -0.09 1.23 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 O -0.56 -9.78 12.09 -35.23 -0.43 -10.21 16 27 H 0.10 0.92 8.05 -52.49 -0.42 0.49 16 28 H 0.10 0.96 5.71 -52.48 -0.30 0.66 16 29 H 0.06 0.69 6.80 -51.93 -0.35 0.34 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.54 7.26 -51.93 -0.38 0.16 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.61 6.88 -51.93 -0.36 0.25 16 35 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 36 H 0.07 0.54 7.66 -51.93 -0.40 0.15 16 37 H 0.06 0.61 7.99 -51.93 -0.42 0.19 16 38 H 0.40 5.23 7.18 -40.82 -0.29 4.93 16 39 H 0.07 1.39 7.61 -51.93 -0.40 0.99 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 46 H 0.37 5.68 9.08 45.56 0.41 6.09 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -30.99 359.41 -7.01 -38.00 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.91 Total: 9.39 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 0.01 Total: 1.94 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.15 Total: -50.81 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.34 Total: -20.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.99 -7.01 -38.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099947264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.666 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds