Wall clock time and date at job start Tue Mar 31 2020 03:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00244 * 2 1 4 4 C 1.50703 * 120.00089 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47124 * 125.46117 * 4 2 1 6 6 C 1.53002 * 109.46976 * 5.46138 * 4 2 1 7 7 C 1.50697 * 109.46991 * 245.46043 * 4 2 1 8 8 O 1.21274 * 120.00114 * 5.88204 * 7 4 2 9 9 N 1.34774 * 119.99777 * 185.88132 * 7 4 2 10 10 C 1.46500 * 120.00066 * 180.02562 * 9 7 4 11 11 H 1.09006 * 109.44870 * 325.02943 * 10 9 7 12 12 C 1.53039 * 109.46579 * 84.99685 * 10 9 7 13 13 C 1.53188 * 109.34366 * 181.40461 * 12 10 9 14 14 N 1.46921 * 108.77301 * 305.34895 * 13 12 10 15 15 C 1.36944 * 120.62840 * 233.58462 * 14 13 12 16 16 H 1.07997 * 119.99761 * 30.28080 * 15 14 13 17 17 C 1.38816 * 120.00071 * 210.27685 * 15 14 13 18 18 N 1.31622 * 119.99789 * 12.26265 * 17 15 14 19 19 Si 1.86797 * 120.00251 * 192.26376 * 17 15 14 20 20 H 1.48502 * 109.46858 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46998 * 119.99598 * 19 17 15 22 22 H 1.48495 * 109.47160 * 240.00198 * 19 17 15 23 23 C 1.46928 * 118.74239 * 53.61113 * 14 13 12 24 24 C 1.53104 * 109.50590 * 205.05226 * 10 9 7 25 25 H 1.09002 * 109.49143 * 58.67186 * 24 10 9 26 26 O 1.42904 * 109.51530 * 298.59860 * 24 10 9 27 27 H 1.08002 * 119.99873 * 354.27383 * 1 2 3 28 28 H 1.08006 * 120.00016 * 174.28250 * 1 2 3 29 29 H 1.08997 * 109.47525 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47170 * 300.00922 * 3 2 1 31 31 H 1.09003 * 109.46995 * 60.00223 * 3 2 1 32 32 H 1.09003 * 109.47114 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47206 * 299.99799 * 5 4 2 34 34 H 1.08992 * 109.47247 * 59.99971 * 5 4 2 35 35 H 1.08999 * 109.46790 * 299.99861 * 6 4 2 36 36 H 1.09002 * 109.47333 * 60.00212 * 6 4 2 37 37 H 1.09003 * 109.47146 * 179.97438 * 6 4 2 38 38 H 0.97000 * 120.00387 * 359.97438 * 9 7 4 39 39 H 1.08997 * 109.49804 * 61.43006 * 12 10 9 40 40 H 1.08999 * 109.49361 * 301.37602 * 12 10 9 41 41 H 1.09005 * 109.58518 * 65.13667 * 13 12 10 42 42 H 1.09004 * 109.58767 * 185.55753 * 13 12 10 43 43 H 0.96996 * 119.99812 * 179.97438 * 18 17 15 44 44 H 1.08993 * 109.58633 * 66.17605 * 23 14 13 45 45 H 1.09002 * 109.58765 * 186.60717 * 23 14 13 46 46 H 0.96698 * 113.99852 * 180.12549 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 3.0432 -1.3278 -1.1756 6 6 1.0749 -2.4647 -0.1384 7 6 2.8256 -1.4456 1.2918 8 8 2.6803 -0.6260 2.1737 9 7 3.6688 -2.4823 1.4675 10 6 4.4094 -2.6192 2.7241 11 1 4.6707 -1.6304 3.1011 12 6 3.5382 -3.3432 3.7532 13 6 4.3019 -3.4538 5.0765 14 7 5.5971 -4.0993 4.8225 15 6 5.9782 -5.2037 5.5368 16 1 5.2321 -5.8909 5.9076 17 6 7.3236 -5.4400 5.7842 18 7 8.2112 -4.4967 5.5505 19 14 7.8741 -7.0967 6.4488 20 1 6.6915 -7.9776 6.6238 21 1 8.8208 -7.7241 5.4920 22 1 8.5477 -6.9056 7.7583 23 6 6.4758 -3.5370 3.7879 24 6 5.6876 -3.4255 2.4789 25 1 6.2973 -2.9214 1.7290 26 8 5.3456 -4.7332 2.0152 27 1 -0.5400 0.9307 0.0933 28 1 -0.5400 -0.9307 -0.0932 29 1 3.1351 1.1059 -0.0005 30 1 1.8000 1.8767 -0.8899 31 1 1.8002 1.8766 0.8900 32 1 3.5879 -2.2720 -1.1762 33 1 2.4919 -1.2262 -2.1104 34 1 3.7474 -0.5018 -1.0774 35 1 0.3769 -2.4485 0.6987 36 1 0.5236 -2.3631 -1.0732 37 1 1.6199 -3.4087 -0.1393 38 1 3.7848 -3.1381 0.7623 39 1 3.2970 -4.3414 3.3878 40 1 2.6176 -2.7811 3.9103 41 1 4.4645 -2.4580 5.4889 42 1 3.7265 -4.0540 5.7815 43 1 9.1512 -4.6617 5.7237 44 1 6.8157 -2.5481 4.0951 45 1 7.3348 -4.1921 3.6424 46 1 6.1089 -5.3008 1.8409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099947264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:27 Heat of formation + Delta-G solvation = -75.250854 kcal Electronic energy + Delta-G solvation = -25553.949168 eV Core-core repulsion = 22057.481217 eV Total energy + Delta-G solvation = -3496.467951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52471 -39.78953 -37.64239 -36.48982 -35.73930 -34.05319 -32.80385 -31.00536 -30.59516 -29.46115 -27.08689 -26.83585 -24.95871 -23.96378 -23.46837 -21.41043 -21.10407 -19.38714 -18.81853 -17.55146 -17.42063 -17.12793 -16.88865 -16.30174 -15.97120 -15.68304 -15.44982 -15.26356 -15.11354 -14.75486 -14.43372 -13.96345 -13.80774 -13.65789 -13.42086 -13.29002 -13.08574 -13.05710 -13.04040 -12.80183 -12.65395 -12.61405 -12.36410 -12.26559 -12.00053 -11.88161 -11.80836 -11.60327 -11.44034 -10.80001 -10.65205 -10.60703 -9.99181 -9.87856 -8.64431 -7.87356 -5.35954 1.26558 1.47053 1.49896 1.60120 1.67951 2.31102 2.51029 3.26449 3.39959 3.53039 3.63990 3.78890 3.87883 3.94534 4.03367 4.11279 4.34081 4.35926 4.40379 4.59539 4.65145 4.69769 4.73439 4.77032 4.84254 4.85718 4.86164 4.91854 4.95278 5.05560 5.08150 5.13171 5.18544 5.25511 5.29785 5.43030 5.53642 5.57360 5.64563 5.72298 5.96445 6.38639 6.63490 6.91853 7.15265 7.30500 7.81555 8.35758 9.18740 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033989 B = 0.003566 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.596935 B = 7850.489293 C = 7932.494925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.110 4.110 4 C -0.043 4.043 5 C -0.137 4.137 6 C -0.140 4.140 7 C 0.518 3.482 8 O -0.578 6.578 9 N -0.706 5.706 10 C 0.169 3.831 11 H 0.069 0.931 12 C -0.118 4.118 13 C 0.145 3.855 14 N -0.598 5.598 15 C -0.255 4.255 16 H 0.061 0.939 17 C -0.046 4.046 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.296 1.296 23 C 0.151 3.849 24 C 0.092 3.908 25 H 0.068 0.932 26 O -0.560 6.560 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.412 0.588 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.009 0.991 42 H 0.055 0.945 43 H 0.251 0.749 44 H 0.001 0.999 45 H 0.075 0.925 46 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 4.840 -17.281 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.113 4.113 3 C -0.167 4.167 4 C -0.047 4.047 5 C -0.195 4.195 6 C -0.197 4.197 7 C 0.306 3.694 8 O -0.458 6.458 9 N -0.357 5.357 10 C 0.064 3.936 11 H 0.087 0.913 12 C -0.158 4.158 13 C 0.018 3.982 14 N -0.321 5.321 15 C -0.385 4.385 16 H 0.079 0.921 17 C -0.241 4.241 18 N -0.583 5.583 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.223 1.223 23 C 0.024 3.976 24 C 0.031 3.969 25 H 0.085 0.915 26 O -0.367 6.367 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.093 0.907 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.955 5.631 -16.554 21.182 hybrid contribution 1.336 -0.987 0.719 1.810 sum -10.619 4.644 -15.836 19.624 Atomic orbital electron populations 1.23947 0.94949 1.03149 1.01250 1.21374 0.95475 0.94169 1.00235 1.20748 0.99465 0.94646 1.01834 1.19865 0.96427 0.95822 0.92537 1.21891 0.98132 1.02936 0.96496 1.21950 0.98402 0.95912 1.03476 1.21082 0.78929 0.80126 0.89304 1.90670 1.65755 1.43575 1.45769 1.45996 1.43842 1.27678 1.18146 1.20661 0.90788 0.97444 0.84674 0.91313 1.22048 0.97560 1.00249 0.95921 1.20968 0.87211 0.95040 0.94948 1.44068 1.16729 1.31596 1.39684 1.19468 0.91497 0.99366 1.28163 0.92126 1.25796 0.96929 1.00880 1.00469 1.70130 1.01299 1.32932 1.53938 0.85172 0.77887 0.79923 0.77206 1.19506 1.21178 1.22288 1.21329 0.93255 0.96378 0.86618 1.22505 0.94432 0.84148 0.95857 0.91465 1.86313 1.37719 1.24765 1.87900 0.87618 0.86753 0.93250 0.89875 0.92811 0.90831 0.89323 0.92468 0.92802 0.88817 0.91028 0.75079 0.91646 0.92793 0.97336 0.92639 0.93993 0.98058 0.90701 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.64 13.34 67.79 0.90 -2.74 16 2 C -0.11 -2.39 4.28 -16.48 -0.07 -2.46 16 3 C -0.11 -2.33 9.03 71.24 0.64 -1.69 16 4 C -0.04 -0.89 0.69 -53.67 -0.04 -0.93 16 5 C -0.14 -2.13 8.09 71.98 0.58 -1.54 16 6 C -0.14 -2.32 7.09 71.98 0.51 -1.81 16 7 C 0.52 15.08 6.32 87.66 0.55 15.63 16 8 O -0.58 -21.82 15.25 -3.01 -0.05 -21.87 16 9 N -0.71 -19.86 4.89 -442.31 -2.16 -22.02 16 10 C 0.17 5.98 2.20 45.04 0.10 6.08 16 11 H 0.07 2.74 7.58 -2.38 -0.02 2.72 16 12 C -0.12 -4.49 5.51 30.67 0.17 -4.32 16 13 C 0.14 6.45 6.52 86.36 0.56 7.02 16 14 N -0.60 -29.95 2.93 -699.09 -2.05 -32.00 16 15 C -0.25 -13.87 9.59 84.03 0.81 -13.07 16 16 H 0.06 3.29 7.86 -2.91 -0.02 3.27 16 17 C -0.05 -2.48 5.02 84.86 0.43 -2.05 16 18 N -0.94 -53.63 11.06 21.65 0.24 -53.39 16 19 Si 0.97 43.97 29.57 68.60 2.03 46.00 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 23 C 0.15 6.98 4.91 86.36 0.42 7.40 16 24 C 0.09 3.24 3.38 30.70 0.10 3.35 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 O -0.56 -18.50 12.09 -148.98 -1.80 -20.30 16 27 H 0.11 1.76 8.05 -2.91 -0.02 1.74 16 28 H 0.11 1.81 5.71 -2.91 -0.02 1.79 16 29 H 0.05 1.12 6.80 -2.39 -0.02 1.10 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 0.99 7.26 -2.39 -0.02 0.97 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.97 6.88 -2.39 -0.02 0.96 16 35 H 0.05 1.02 7.34 -2.39 -0.02 1.00 16 36 H 0.09 1.11 7.66 -2.39 -0.02 1.09 16 37 H 0.07 1.10 7.99 -2.39 -0.02 1.08 16 38 H 0.41 9.69 7.18 -92.71 -0.67 9.02 16 39 H 0.06 2.56 7.61 -2.39 -0.02 2.54 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.06 2.43 7.93 -2.39 -0.02 2.42 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 46 H 0.39 10.97 9.08 -74.06 -0.67 10.29 16 Total: -1.00 -67.21 359.41 1.53 -65.69 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.36 Total: 29.02 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.68 Total: 8.86 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -3.97 Total: -107.41 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.85 Total: -42.17 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.21 1.53 -65.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099947264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.562 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds