Wall clock time and date at job start Tue Mar 31 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50700 * 119.99776 * 2 1 4 4 C 1.30997 * 119.99829 * 179.97438 * 2 1 3 5 5 C 1.50699 * 119.99802 * 174.09525 * 4 2 1 6 6 C 1.50697 * 120.00132 * 354.09920 * 4 2 1 7 7 C 1.50704 * 109.46964 * 95.00017 * 6 4 2 8 8 O 1.21275 * 120.00276 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99540 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99661 * 179.72470 * 9 7 6 11 11 H 1.09003 * 109.45910 * 325.27370 * 10 9 7 12 12 C 1.53038 * 109.46395 * 85.24579 * 10 9 7 13 13 C 1.53192 * 109.31118 * 58.65203 * 12 10 9 14 14 N 1.46925 * 108.77254 * 54.64063 * 13 12 10 15 15 C 1.36939 * 120.63215 * 126.36937 * 14 13 12 16 16 H 1.08002 * 119.99827 * 324.06370 * 15 14 13 17 17 C 1.38811 * 120.00098 * 144.06403 * 15 14 13 18 18 N 1.31615 * 119.99875 * 342.22044 * 17 15 14 19 19 Si 1.86802 * 120.00029 * 162.22262 * 17 15 14 20 20 H 1.48504 * 109.47038 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47401 * 119.99879 * 19 17 15 22 22 H 1.48501 * 109.47007 * 240.00268 * 19 17 15 23 23 C 1.46929 * 118.73947 * 306.38722 * 14 13 12 24 24 C 1.53040 * 109.45855 * 205.30212 * 10 9 7 25 25 H 1.09001 * 109.49718 * 181.39263 * 24 10 9 26 26 O 1.42903 * 109.50022 * 61.29676 * 24 10 9 27 27 H 1.08998 * 109.47518 * 270.00344 * 1 2 3 28 28 H 1.09000 * 109.47103 * 30.00184 * 1 2 3 29 29 H 1.08997 * 109.47284 * 149.99913 * 1 2 3 30 30 H 1.08996 * 109.47110 * 239.28507 * 3 2 1 31 31 H 1.08993 * 109.47592 * 359.28873 * 3 2 1 32 32 H 1.09002 * 109.47359 * 119.28907 * 3 2 1 33 33 H 1.08999 * 109.47504 * 271.77262 * 5 4 2 34 34 H 1.09005 * 109.47270 * 31.77362 * 5 4 2 35 35 H 1.08999 * 109.47508 * 151.77113 * 5 4 2 36 36 H 1.08997 * 109.47183 * 334.99489 * 6 4 2 37 37 H 1.09005 * 109.46864 * 214.99588 * 6 4 2 38 38 H 0.97001 * 120.00301 * 359.97438 * 9 7 6 39 39 H 1.08998 * 109.49763 * 178.61092 * 12 10 9 40 40 H 1.09003 * 109.49519 * 298.67300 * 12 10 9 41 41 H 1.09000 * 109.58213 * 174.42073 * 13 12 10 42 42 H 1.08995 * 109.58674 * 294.85027 * 13 12 10 43 43 H 0.97008 * 119.99802 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.58811 * 173.39910 * 23 14 13 45 45 H 1.09004 * 109.58253 * 293.82291 * 23 14 13 46 46 H 0.96700 * 114.00088 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 3.6629 -1.1380 -0.1338 6 6 1.4145 -2.4360 0.1353 7 6 1.1462 -3.0054 -1.2341 8 8 1.5244 -2.4124 -2.2221 9 7 0.4852 -4.1731 -1.3607 10 6 0.2191 -4.7235 -2.6920 11 1 0.0346 -3.9083 -3.3917 12 6 1.4304 -5.5331 -3.1605 13 6 1.7076 -6.6567 -2.1567 14 7 0.4825 -7.4491 -1.9838 15 6 0.4998 -8.8074 -2.1567 16 1 1.1283 -9.2469 -2.9172 17 6 -0.2903 -9.6194 -1.3546 18 7 -0.7774 -9.1536 -0.2241 19 14 -0.6622 -11.3731 -1.8798 20 1 -0.0019 -11.6508 -3.1806 21 1 -0.1507 -12.3163 -0.8532 22 1 -2.1300 -11.5460 -2.0235 23 6 -0.7617 -6.7564 -1.6221 24 6 -1.0110 -5.6319 -2.6316 25 1 -1.1949 -6.0613 -3.6165 26 8 -2.1481 -4.8685 -2.2236 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 2.8967 1.3574 -0.8835 31 1 1.5523 2.1336 -0.0128 32 1 2.8775 1.3685 0.8963 33 1 3.9333 -1.1604 -1.1894 34 1 4.0711 -0.2383 0.3268 35 1 4.0703 -2.0178 0.3643 36 1 0.4685 -2.2604 0.6475 37 1 2.0139 -3.1414 0.7109 38 1 0.1824 -4.6472 -0.5705 39 1 1.2235 -5.9633 -4.1403 40 1 2.3009 -4.8804 -3.2261 41 1 2.5057 -7.2957 -2.5348 42 1 2.0031 -6.2270 -1.1996 43 1 -1.3299 -9.7209 0.3362 44 1 -1.5929 -7.4610 -1.6473 45 1 -0.6676 -6.3349 -0.6212 46 1 -2.9654 -5.3819 -2.1632 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099948650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:56 Heat of formation + Delta-G solvation = -67.158511 kcal Electronic energy + Delta-G solvation = -25266.110531 eV Core-core repulsion = 21769.993491 eV Total energy + Delta-G solvation = -3496.117040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.90408 -38.22407 -36.77519 -35.29515 -33.97330 -32.05389 -31.04551 -29.94746 -29.24953 -28.74600 -26.55211 -25.25031 -23.83943 -22.39165 -21.80817 -20.62313 -18.70198 -17.28206 -16.81326 -16.74442 -16.54219 -15.69400 -15.12591 -14.96303 -14.59948 -14.31777 -14.04886 -13.97895 -13.73306 -13.34006 -13.26320 -12.79300 -12.68259 -12.35383 -12.29779 -12.12467 -11.98098 -11.87180 -11.74712 -11.60087 -11.25587 -11.09583 -11.04264 -10.87132 -10.71475 -10.41581 -10.26260 -10.07422 -9.67361 -9.49475 -9.33445 -8.63042 -8.52352 -8.39235 -6.70379 -5.93109 -3.43401 2.13478 3.03857 3.28104 3.37482 3.39914 3.69852 4.37393 4.58317 4.72051 4.92697 5.08690 5.20834 5.25865 5.32296 5.40219 5.44105 5.47730 5.50945 5.63248 5.67700 5.69893 5.73105 5.82495 5.86642 5.89095 5.91878 5.95733 5.99459 6.02389 6.12496 6.25841 6.45456 6.46950 6.67749 6.74361 6.81498 6.96160 7.02553 7.04143 7.26589 7.71996 7.97201 8.06024 8.36724 8.65111 9.06658 9.67859 10.29468 11.14064 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027149 B = 0.003602 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.114331 B = 7770.735598 C = 7982.689011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C -0.110 4.110 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.108 4.108 7 C 0.516 3.484 8 O -0.547 6.547 9 N -0.708 5.708 10 C 0.167 3.833 11 H 0.077 0.923 12 C -0.144 4.144 13 C 0.146 3.854 14 N -0.585 5.585 15 C -0.264 4.264 16 H 0.064 0.936 17 C 0.013 3.987 18 N -0.894 5.894 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.151 3.849 24 C 0.067 3.933 25 H 0.061 0.939 26 O -0.573 6.573 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.403 0.597 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 14.515 1.457 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.135 4.135 3 C -0.167 4.167 4 C -0.109 4.109 5 C -0.169 4.169 6 C -0.148 4.148 7 C 0.302 3.698 8 O -0.425 6.425 9 N -0.360 5.360 10 C 0.062 3.938 11 H 0.095 0.905 12 C -0.184 4.184 13 C 0.020 3.980 14 N -0.309 5.309 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.188 4.188 18 N -0.537 5.537 19 Si 0.729 3.271 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.214 1.214 23 C 0.024 3.976 24 C 0.006 3.994 25 H 0.079 0.921 26 O -0.377 6.377 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.239 0.761 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.045 0.955 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.820 15.318 0.878 15.600 hybrid contribution -0.907 -1.796 0.206 2.023 sum 1.913 13.522 1.085 13.700 Atomic orbital electron populations 1.20842 0.92455 1.02545 1.01430 1.21314 0.95496 0.94496 1.02179 1.20756 0.99643 0.94632 1.01636 1.20799 0.95537 0.92776 1.01770 1.20793 0.92078 1.01746 1.02324 1.20797 1.01991 0.96276 0.95743 1.20457 0.77703 0.80563 0.91094 1.90650 1.51785 1.60209 1.39807 1.46033 1.57444 1.22789 1.09702 1.20753 0.93453 0.95152 0.84462 0.90516 1.22396 0.97072 0.98327 1.00641 1.20934 0.90233 0.91662 0.95147 1.43868 1.01997 1.03160 1.81904 1.19131 1.26192 0.81360 1.12659 0.91835 1.25241 1.01258 0.97845 0.94422 1.70052 1.36565 1.36640 1.10406 0.86281 0.77904 0.84620 0.78285 1.20041 1.21543 1.21447 1.21269 0.91108 0.91774 0.93431 1.22932 0.84634 0.92391 0.99417 0.92099 1.86424 1.19453 1.40088 1.91755 0.91845 0.92082 0.91797 0.91797 0.92438 0.91812 0.91033 0.91996 0.92361 0.88468 0.88473 0.76066 0.91327 0.91791 0.92521 0.96209 0.93559 0.90628 0.95482 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.94 36.01 0.32 -0.99 16 2 C -0.13 -1.61 6.04 -101.07 -0.61 -2.22 16 3 C -0.11 -1.06 8.67 36.01 0.31 -0.75 16 4 C -0.11 -1.38 4.54 -101.07 -0.46 -1.84 16 5 C -0.11 -1.29 9.51 36.00 0.34 -0.95 16 6 C -0.11 -1.41 5.16 -29.03 -0.15 -1.56 16 7 C 0.52 8.46 7.33 -10.98 -0.08 8.38 16 8 O -0.55 -10.59 15.69 5.56 0.09 -10.50 16 9 N -0.71 -11.87 4.15 -53.77 -0.22 -12.09 16 10 C 0.17 3.00 2.47 -67.89 -0.17 2.83 16 11 H 0.08 1.46 7.57 -51.93 -0.39 1.07 16 12 C -0.14 -2.61 5.77 -26.61 -0.15 -2.76 16 13 C 0.15 3.00 6.26 -3.71 -0.02 2.97 16 14 N -0.58 -13.74 2.94 -172.34 -0.51 -14.25 16 15 C -0.26 -6.90 9.48 -15.06 -0.14 -7.05 16 16 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 17 C 0.01 0.34 4.84 -17.43 -0.08 0.25 16 18 N -0.89 -24.59 11.87 55.49 0.66 -23.94 16 19 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.15 3.26 4.62 -3.72 -0.02 3.24 16 24 C 0.07 1.22 3.36 -26.63 -0.09 1.13 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 O -0.57 -9.57 13.21 -35.23 -0.47 -10.04 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 29 H 0.06 0.83 6.37 -51.93 -0.33 0.50 16 30 H 0.06 0.63 7.97 -51.93 -0.41 0.21 16 31 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 32 H 0.06 0.54 7.61 -51.93 -0.40 0.14 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.59 6.53 -51.93 -0.34 0.25 16 35 H 0.06 0.62 8.07 -51.93 -0.42 0.21 16 36 H 0.10 1.14 6.55 -51.93 -0.34 0.80 16 37 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 38 H 0.40 6.71 6.87 -40.82 -0.28 6.43 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 43 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.08 1.81 6.70 -51.93 -0.35 1.46 16 45 H 0.03 0.61 6.64 -51.93 -0.34 0.27 16 46 H 0.37 4.95 9.08 45.56 0.41 5.36 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -30.39 362.37 -7.94 -38.32 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.92 Total: 10.64 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.00 Total: 0.69 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.07 Total: -50.28 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.38 Total: -20.54 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.39 -7.94 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099948650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.835 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds