Wall clock time and date at job start Tue Mar 31 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50700 * 119.99776 * 2 1 4 4 C 1.30997 * 119.99829 * 179.97438 * 2 1 3 5 5 C 1.50699 * 119.99802 * 174.09525 * 4 2 1 6 6 C 1.50697 * 120.00132 * 354.09920 * 4 2 1 7 7 C 1.50704 * 109.46964 * 95.00017 * 6 4 2 8 8 O 1.21275 * 120.00276 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99540 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99661 * 179.72470 * 9 7 6 11 11 H 1.09003 * 109.45910 * 325.27370 * 10 9 7 12 12 C 1.53038 * 109.46395 * 85.24579 * 10 9 7 13 13 C 1.53192 * 109.31118 * 58.65203 * 12 10 9 14 14 N 1.46925 * 108.77254 * 54.64063 * 13 12 10 15 15 C 1.36939 * 120.63215 * 126.36937 * 14 13 12 16 16 H 1.08002 * 119.99827 * 324.06370 * 15 14 13 17 17 C 1.38811 * 120.00098 * 144.06403 * 15 14 13 18 18 N 1.31615 * 119.99875 * 342.22044 * 17 15 14 19 19 Si 1.86802 * 120.00029 * 162.22262 * 17 15 14 20 20 H 1.48504 * 109.47038 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47401 * 119.99879 * 19 17 15 22 22 H 1.48501 * 109.47007 * 240.00268 * 19 17 15 23 23 C 1.46929 * 118.73947 * 306.38722 * 14 13 12 24 24 C 1.53040 * 109.45855 * 205.30212 * 10 9 7 25 25 H 1.09001 * 109.49718 * 181.39263 * 24 10 9 26 26 O 1.42903 * 109.50022 * 61.29676 * 24 10 9 27 27 H 1.08998 * 109.47518 * 270.00344 * 1 2 3 28 28 H 1.09000 * 109.47103 * 30.00184 * 1 2 3 29 29 H 1.08997 * 109.47284 * 149.99913 * 1 2 3 30 30 H 1.08996 * 109.47110 * 239.28507 * 3 2 1 31 31 H 1.08993 * 109.47592 * 359.28873 * 3 2 1 32 32 H 1.09002 * 109.47359 * 119.28907 * 3 2 1 33 33 H 1.08999 * 109.47504 * 271.77262 * 5 4 2 34 34 H 1.09005 * 109.47270 * 31.77362 * 5 4 2 35 35 H 1.08999 * 109.47508 * 151.77113 * 5 4 2 36 36 H 1.08997 * 109.47183 * 334.99489 * 6 4 2 37 37 H 1.09005 * 109.46864 * 214.99588 * 6 4 2 38 38 H 0.97001 * 120.00301 * 359.97438 * 9 7 6 39 39 H 1.08998 * 109.49763 * 178.61092 * 12 10 9 40 40 H 1.09003 * 109.49519 * 298.67300 * 12 10 9 41 41 H 1.09000 * 109.58213 * 174.42073 * 13 12 10 42 42 H 1.08995 * 109.58674 * 294.85027 * 13 12 10 43 43 H 0.97008 * 119.99802 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.58811 * 173.39910 * 23 14 13 45 45 H 1.09004 * 109.58253 * 293.82291 * 23 14 13 46 46 H 0.96700 * 114.00088 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 3.6629 -1.1380 -0.1338 6 6 1.4145 -2.4360 0.1353 7 6 1.1462 -3.0054 -1.2341 8 8 1.5244 -2.4124 -2.2221 9 7 0.4852 -4.1731 -1.3607 10 6 0.2191 -4.7235 -2.6920 11 1 0.0346 -3.9083 -3.3917 12 6 1.4304 -5.5331 -3.1605 13 6 1.7076 -6.6567 -2.1567 14 7 0.4825 -7.4491 -1.9838 15 6 0.4998 -8.8074 -2.1567 16 1 1.1283 -9.2469 -2.9172 17 6 -0.2903 -9.6194 -1.3546 18 7 -0.7774 -9.1536 -0.2241 19 14 -0.6622 -11.3731 -1.8798 20 1 -0.0019 -11.6508 -3.1806 21 1 -0.1507 -12.3163 -0.8532 22 1 -2.1300 -11.5460 -2.0235 23 6 -0.7617 -6.7564 -1.6221 24 6 -1.0110 -5.6319 -2.6316 25 1 -1.1949 -6.0613 -3.6165 26 8 -2.1481 -4.8685 -2.2236 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 2.8967 1.3574 -0.8835 31 1 1.5523 2.1336 -0.0128 32 1 2.8775 1.3685 0.8963 33 1 3.9333 -1.1604 -1.1894 34 1 4.0711 -0.2383 0.3268 35 1 4.0703 -2.0178 0.3643 36 1 0.4685 -2.2604 0.6475 37 1 2.0139 -3.1414 0.7109 38 1 0.1824 -4.6472 -0.5705 39 1 1.2235 -5.9633 -4.1403 40 1 2.3009 -4.8804 -3.2261 41 1 2.5057 -7.2957 -2.5348 42 1 2.0031 -6.2270 -1.1996 43 1 -1.3299 -9.7209 0.3362 44 1 -1.5929 -7.4610 -1.6473 45 1 -0.6676 -6.3349 -0.6212 46 1 -2.9654 -5.3819 -2.1632 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099948650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:55 Heat of formation + Delta-G solvation = -87.218060 kcal Electronic energy + Delta-G solvation = -25266.980378 eV Core-core repulsion = 21769.993491 eV Total energy + Delta-G solvation = -3496.986888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27306 -39.60270 -37.86114 -36.85411 -35.57130 -33.73225 -32.19525 -31.32703 -30.62226 -30.05296 -27.60362 -26.95337 -24.83116 -24.01753 -23.46859 -21.97123 -20.25479 -18.87965 -18.22944 -18.07521 -17.79708 -16.84030 -16.80658 -16.38608 -15.90131 -15.69947 -15.48765 -15.25657 -15.12966 -14.77564 -14.43695 -14.35919 -13.85476 -13.62239 -13.53228 -13.26433 -13.14402 -12.99178 -12.91932 -12.82706 -12.74583 -12.69403 -12.59430 -12.14960 -12.13526 -11.99954 -11.87045 -11.60575 -11.24355 -10.98791 -10.80939 -10.60184 -9.96426 -9.32256 -8.62245 -7.91741 -5.45329 1.18906 1.45206 1.49437 1.58821 1.74739 2.40157 2.48810 3.13326 3.24784 3.66831 3.78344 3.89101 4.03339 4.10044 4.15576 4.23924 4.25646 4.35584 4.42866 4.46223 4.58984 4.66476 4.71918 4.74780 4.82445 4.86758 4.92138 4.96060 5.03116 5.08025 5.09239 5.10771 5.13406 5.16404 5.23935 5.27524 5.51531 5.59663 5.66375 5.78580 6.13236 6.38196 6.63777 6.81926 7.12195 7.33443 7.76904 8.34510 9.12543 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027149 B = 0.003602 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.114331 B = 7770.735598 C = 7982.689011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.135 4.135 3 C -0.110 4.110 4 C -0.133 4.133 5 C -0.110 4.110 6 C -0.103 4.103 7 C 0.515 3.485 8 O -0.577 6.577 9 N -0.707 5.707 10 C 0.169 3.831 11 H 0.070 0.930 12 C -0.130 4.130 13 C 0.148 3.852 14 N -0.600 5.600 15 C -0.274 4.274 16 H 0.060 0.940 17 C -0.032 4.032 18 N -0.922 5.922 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.287 1.287 23 C 0.163 3.837 24 C 0.085 3.915 25 H 0.062 0.938 26 O -0.573 6.573 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.404 0.596 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.017 0.983 43 H 0.252 0.748 44 H 0.049 0.951 45 H 0.015 0.985 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 15.430 1.625 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.166 4.166 4 C -0.133 4.133 5 C -0.166 4.166 6 C -0.142 4.142 7 C 0.303 3.697 8 O -0.457 6.457 9 N -0.359 5.359 10 C 0.064 3.936 11 H 0.089 0.911 12 C -0.171 4.171 13 C 0.023 3.977 14 N -0.324 5.324 15 C -0.405 4.405 16 H 0.078 0.922 17 C -0.230 4.230 18 N -0.566 5.566 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.214 1.214 23 C 0.037 3.963 24 C 0.024 3.976 25 H 0.080 0.920 26 O -0.380 6.380 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.241 0.759 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.842 16.242 1.044 16.522 hybrid contribution -0.929 -2.024 0.165 2.234 sum 1.912 14.218 1.209 14.397 Atomic orbital electron populations 1.20865 0.92255 1.01906 1.02348 1.21662 0.95961 0.95316 1.00569 1.20798 0.99880 0.93777 1.02192 1.20948 0.96191 0.92791 1.03394 1.20767 0.91581 1.02926 1.01344 1.20820 1.03013 0.96766 0.93625 1.21053 0.76600 0.79880 0.92136 1.90630 1.52973 1.60916 1.41207 1.46041 1.57568 1.23069 1.09178 1.20646 0.93158 0.94703 0.85106 0.91145 1.22236 0.97396 0.97407 1.00014 1.20958 0.89165 0.91945 0.95635 1.44066 1.03476 1.02878 1.82024 1.19372 1.25961 0.82790 1.12335 0.92205 1.25890 1.01448 1.01191 0.94464 1.70159 1.37335 1.37776 1.11297 0.85328 0.77462 0.80419 0.77886 1.19328 1.21908 1.21388 1.21090 0.89586 0.91856 0.93798 1.22576 0.85467 0.91360 0.98172 0.92017 1.86402 1.19860 1.40129 1.91581 0.90122 0.91266 0.93841 0.92088 0.91271 0.90307 0.92824 0.90147 0.91981 0.87177 0.87192 0.75939 0.90887 0.91268 0.92791 0.96461 0.93859 0.93226 0.96665 0.75947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.94 71.24 0.64 -1.82 16 2 C -0.13 -2.99 6.04 -16.48 -0.10 -3.09 16 3 C -0.11 -1.88 8.67 71.24 0.62 -1.26 16 4 C -0.13 -3.20 4.54 -16.49 -0.07 -3.28 16 5 C -0.11 -2.38 9.51 71.24 0.68 -1.71 16 6 C -0.10 -2.55 5.16 29.10 0.15 -2.40 16 7 C 0.52 16.56 7.33 87.66 0.64 17.20 16 8 O -0.58 -22.14 15.69 -3.02 -0.05 -22.19 16 9 N -0.71 -23.28 4.15 -442.41 -1.84 -25.12 16 10 C 0.17 5.96 2.47 45.02 0.11 6.07 16 11 H 0.07 2.62 7.57 -2.39 -0.02 2.61 16 12 C -0.13 -4.61 5.77 30.67 0.18 -4.44 16 13 C 0.15 6.03 6.26 86.36 0.54 6.57 16 14 N -0.60 -28.18 2.94 -699.16 -2.06 -30.24 16 15 C -0.27 -14.36 9.48 84.03 0.80 -13.56 16 16 H 0.06 3.12 7.89 -2.91 -0.02 3.10 16 17 C -0.03 -1.70 4.84 84.86 0.41 -1.29 16 18 N -0.92 -51.08 11.87 21.65 0.26 -50.83 16 19 Si 0.96 42.63 29.59 68.60 2.03 44.66 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 C 0.16 7.06 4.62 86.35 0.40 7.45 16 24 C 0.09 3.05 3.36 30.66 0.10 3.16 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 O -0.57 -18.46 13.21 -148.98 -1.97 -20.43 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 29 H 0.04 1.09 6.37 -2.39 -0.02 1.07 16 30 H 0.06 1.09 7.97 -2.39 -0.02 1.07 16 31 H 0.07 1.01 7.94 -2.39 -0.02 0.99 16 32 H 0.08 1.12 7.61 -2.39 -0.02 1.10 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.39 6.53 -2.38 -0.02 1.38 16 35 H 0.06 1.26 8.07 -2.39 -0.02 1.24 16 36 H 0.11 2.42 6.55 -2.39 -0.02 2.40 16 37 H 0.11 2.42 8.09 -2.38 -0.02 2.40 16 38 H 0.40 13.25 6.87 -92.71 -0.64 12.61 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 42 H 0.02 0.72 7.74 -2.39 -0.02 0.70 16 43 H 0.25 13.54 8.31 -92.70 -0.77 12.77 16 44 H 0.05 2.39 6.70 -2.39 -0.02 2.38 16 45 H 0.02 0.70 6.64 -2.38 -0.02 0.68 16 46 H 0.39 9.82 9.08 -74.06 -0.67 9.14 16 Total: -1.00 -63.85 362.37 1.14 -62.71 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.33 Total: 33.82 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.09 Total: 7.61 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.64 Total: -106.18 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -2.02 Total: -42.62 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -63.85 1.14 -62.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099948650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.511 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds