Wall clock time and date at job start Tue Mar 31 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.50971 * 2 1 4 4 N 1.46498 * 109.47545 * 60.09503 * 3 2 1 5 5 C 1.34776 * 119.99807 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99989 * 180.02562 * 5 4 3 8 8 C 1.52992 * 109.47569 * 179.97438 * 7 5 4 9 9 C 1.53781 * 113.61494 * 274.13594 * 8 7 5 10 10 C 1.53947 * 87.02034 * 220.04292 * 9 8 7 11 11 C 1.53783 * 113.61855 * 176.52602 * 8 7 5 12 12 C 1.53287 * 109.55718 * 239.86745 * 2 1 3 13 13 N 1.47153 * 108.38789 * 292.35525 * 12 2 1 14 14 C 1.36937 * 120.98613 * 129.47389 * 13 12 2 15 15 H 1.07995 * 120.00015 * 206.22343 * 14 13 12 16 16 C 1.38806 * 120.00007 * 26.22376 * 14 13 12 17 17 N 1.31622 * 119.99877 * 16.91983 * 16 14 13 18 18 Si 1.86797 * 120.00177 * 196.92146 * 16 14 13 19 19 H 1.48502 * 109.46913 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47373 * 120.00013 * 18 16 14 21 21 H 1.48507 * 109.47015 * 240.00248 * 18 16 14 22 22 C 1.47170 * 118.07200 * 309.49637 * 13 12 2 23 23 C 1.53304 * 108.37356 * 50.45227 * 22 13 12 24 24 O 1.42956 * 109.26662 * 307.77128 * 23 22 13 25 25 H 1.08998 * 109.47066 * 299.89922 * 1 2 3 26 26 H 1.08994 * 109.46830 * 59.90486 * 1 2 3 27 27 H 1.09001 * 109.46507 * 179.90122 * 1 2 3 28 28 H 1.09001 * 109.46753 * 180.10301 * 3 2 1 29 29 H 1.09007 * 109.46506 * 300.09275 * 3 2 1 30 30 H 0.97000 * 119.99701 * 0.02562 * 4 3 2 31 31 H 1.09003 * 109.46871 * 300.00146 * 7 5 4 32 32 H 1.09007 * 109.47282 * 59.99487 * 7 5 4 33 33 H 1.09004 * 112.84798 * 45.32834 * 8 7 5 34 34 H 1.08995 * 113.61544 * 334.56958 * 9 8 7 35 35 H 1.08999 * 113.61319 * 105.46695 * 9 8 7 36 36 H 1.09000 * 113.54468 * 270.81275 * 10 9 8 37 37 H 1.09001 * 113.74574 * 139.94019 * 10 9 8 38 38 H 1.08998 * 113.61290 * 254.53411 * 11 8 7 39 39 H 1.08998 * 113.61147 * 25.43531 * 11 8 7 40 40 H 1.09003 * 109.68179 * 52.07309 * 12 2 1 41 41 H 1.08998 * 109.68531 * 172.62536 * 12 2 1 42 42 H 0.97000 * 119.99981 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.64593 * 290.76022 * 22 13 12 44 44 H 1.08997 * 109.72920 * 170.19618 * 22 13 12 45 45 H 1.09009 * 109.50759 * 187.82772 * 23 22 13 46 46 H 1.08992 * 109.51384 * 67.72704 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5551 2.1325 1.1973 5 6 1.8815 3.4227 1.4104 6 8 2.5772 4.0122 0.6108 7 6 1.3822 4.1327 2.6423 8 6 1.8930 5.5748 2.6422 9 6 3.2951 5.7317 3.2541 10 6 2.7770 7.0254 3.9083 11 6 1.3686 6.4143 3.8190 12 6 2.0432 -0.7251 -1.2492 13 7 1.6981 -2.1509 -1.1330 14 6 1.0645 -2.8083 -2.1535 15 1 0.4519 -3.6720 -1.9413 16 6 1.2096 -2.3647 -3.4607 17 7 2.1913 -1.5452 -3.7724 18 14 0.0116 -2.9305 -4.7775 19 1 -0.9929 -3.8425 -4.1739 20 1 -0.6770 -1.7509 -5.3602 21 1 0.7528 -3.6485 -5.8455 22 6 2.0532 -2.8501 0.1123 23 6 1.5406 -2.0206 1.2953 24 8 2.0075 -0.6757 1.1660 25 1 -0.3633 0.5123 0.8909 26 1 -0.3633 0.5153 -0.8891 27 1 -0.3632 -1.0277 -0.0018 28 1 3.1311 1.4414 -0.0018 29 1 1.6766 1.9567 -0.8892 30 1 0.9984 1.6610 1.8366 31 1 0.2921 4.1330 2.6447 32 1 1.7473 3.6183 3.5313 33 1 1.7821 6.0631 1.6739 34 1 3.5484 4.9509 3.9711 35 1 4.0781 5.8987 2.5145 36 1 2.9089 7.9108 3.2865 37 1 3.1259 7.1704 4.9308 38 1 0.5986 7.1315 3.5348 39 1 1.0942 5.8204 4.6909 40 1 1.5716 -0.3046 -2.1375 41 1 3.1252 -0.6138 -1.3199 42 1 2.2930 -1.2355 -4.6860 43 1 3.1363 -2.9535 0.1785 44 1 1.5883 -3.8358 0.1263 45 1 1.9123 -2.4470 2.2271 46 1 0.4507 -2.0288 1.3005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107840693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:12 Heat of formation + Delta-G solvation = -46.260753 kcal Electronic energy + Delta-G solvation = -24896.633745 eV Core-core repulsion = 21401.422900 eV Total energy + Delta-G solvation = -3495.210845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00305 -39.09139 -38.09380 -34.87447 -34.31205 -31.93116 -31.27349 -30.37503 -27.96219 -26.47176 -25.75155 -25.58893 -23.45037 -23.21966 -21.22878 -20.19874 -19.48369 -18.69680 -17.23618 -16.83399 -16.05725 -15.66305 -15.55139 -15.22461 -14.76955 -14.47916 -14.33558 -14.07332 -13.71433 -13.49271 -13.23083 -13.00902 -12.72372 -12.59581 -12.40415 -11.96906 -11.87489 -11.59569 -11.52606 -11.20524 -11.03136 -10.84580 -10.76845 -10.67529 -10.44969 -10.33046 -10.31777 -10.24702 -10.00360 -9.67045 -9.49759 -9.04806 -8.76067 -8.55568 -6.75743 -5.86046 -3.29467 2.85869 3.31831 3.39603 3.41721 3.42098 4.24012 4.42253 4.45574 4.49712 4.58515 4.72995 5.02060 5.15551 5.23899 5.32707 5.37839 5.46032 5.48847 5.51468 5.55791 5.61519 5.67716 5.72031 5.79246 5.90588 5.92888 5.97015 6.03014 6.09843 6.13375 6.14974 6.31526 6.39080 6.46143 6.58354 6.70410 6.76767 6.81090 7.06025 7.45628 7.69566 7.75281 7.87201 8.31348 8.45631 9.09248 9.72368 10.29453 11.21924 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.003218 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.753800 B = 8698.153361 C = 9193.837978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.140 3.860 4 N -0.720 5.720 5 C 0.508 3.492 6 O -0.545 6.545 7 C -0.132 4.132 8 C -0.093 4.093 9 C -0.134 4.134 10 C -0.143 4.143 11 C -0.139 4.139 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.290 1.290 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.384 6.384 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.401 0.599 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.029 0.971 42 H 0.255 0.745 43 H 0.025 0.975 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 10.783 15.509 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.016 3.984 4 N -0.371 5.371 5 C 0.294 3.706 6 O -0.423 6.423 7 C -0.172 4.172 8 C -0.112 4.112 9 C -0.172 4.172 10 C -0.181 4.181 11 C -0.176 4.176 12 C 0.033 3.967 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.304 6.304 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.236 0.764 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.692 11.319 14.870 18.881 hybrid contribution -0.960 -0.816 -0.670 1.427 sum -3.652 10.502 14.200 18.035 Atomic orbital electron populations 1.22200 0.95789 1.03174 1.00704 1.22554 0.93533 0.90755 0.89451 1.21327 0.99808 0.89871 0.87423 1.46032 1.53575 1.11805 1.25731 1.20662 0.80461 0.81836 0.87671 1.90688 1.38100 1.66188 1.47278 1.21695 1.02299 0.96376 0.96830 1.22313 0.96373 0.93527 0.98962 1.22961 0.97136 0.97418 0.99664 1.22827 0.96708 0.97714 1.00812 1.22984 0.96970 0.99160 0.98510 1.21286 0.97797 0.83894 0.93687 1.44015 1.68706 1.04974 1.13779 1.19194 1.21625 1.12115 0.85371 0.91377 1.25044 0.97319 1.00109 0.97115 1.70027 1.29210 1.36816 1.18457 0.86224 0.80730 0.78027 0.81804 1.20261 1.21454 1.21641 1.21602 0.97554 0.95213 0.87374 1.23030 0.98286 0.83161 0.98709 1.87812 1.72987 1.25773 1.43805 0.93935 0.91933 0.90858 0.91027 0.90240 0.76434 0.89038 0.89041 0.88307 0.90410 0.91186 0.90321 0.91666 0.91552 0.90155 0.88571 0.95296 0.93469 0.95670 0.92043 0.90217 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 7.92 37.16 0.29 -2.44 16 2 C 0.08 1.45 0.76 -90.47 -0.07 1.38 16 3 C 0.14 2.42 4.82 -4.04 -0.02 2.40 16 4 N -0.72 -10.25 5.15 -60.29 -0.31 -10.56 16 5 C 0.51 7.27 7.83 -10.99 -0.09 7.18 16 6 O -0.54 -9.94 15.79 5.56 0.09 -9.85 16 7 C -0.13 -1.32 5.52 -27.89 -0.15 -1.47 16 8 C -0.09 -0.95 3.11 -89.81 -0.28 -1.23 16 9 C -0.13 -1.35 7.65 -25.83 -0.20 -1.54 16 10 C -0.14 -1.17 8.09 -25.83 -0.21 -1.38 16 11 C -0.14 -1.10 7.65 -25.92 -0.20 -1.29 16 12 C 0.16 3.73 4.12 -3.54 -0.01 3.71 16 13 N -0.59 -14.35 2.57 -171.81 -0.44 -14.79 16 14 C -0.25 -6.72 9.65 -15.06 -0.15 -6.87 16 15 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 16 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 17 N -0.90 -25.65 11.14 55.49 0.62 -25.03 16 18 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.11 2.22 6.74 -3.52 -0.02 2.20 16 23 C 0.05 0.79 6.59 37.31 0.25 1.03 16 24 O -0.38 -7.02 9.97 -35.23 -0.35 -7.37 16 25 H 0.04 0.59 6.87 -51.93 -0.36 0.24 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.36 6.12 -51.93 -0.32 1.04 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.40 4.94 7.20 -40.82 -0.29 4.64 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.78 7.87 -51.93 -0.41 0.37 16 33 H 0.10 1.18 7.73 -51.93 -0.40 0.78 16 34 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 45 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 46 H 0.05 0.79 6.26 -51.93 -0.32 0.46 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -30.64 358.83 -8.83 -39.47 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.87 Total: 4.87 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.94 Total: 1.67 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.13 Total: -50.38 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.26 Total: -17.22 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.64 -8.83 -39.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107840693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.795 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds