Wall clock time and date at job start Tue Mar 31 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.50971 * 2 1 4 4 N 1.46498 * 109.47545 * 60.09503 * 3 2 1 5 5 C 1.34776 * 119.99807 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99989 * 180.02562 * 5 4 3 8 8 C 1.52992 * 109.47569 * 179.97438 * 7 5 4 9 9 C 1.53781 * 113.61494 * 274.13594 * 8 7 5 10 10 C 1.53947 * 87.02034 * 220.04292 * 9 8 7 11 11 C 1.53783 * 113.61855 * 176.52602 * 8 7 5 12 12 C 1.53287 * 109.55718 * 239.86745 * 2 1 3 13 13 N 1.47153 * 108.38789 * 292.35525 * 12 2 1 14 14 C 1.36937 * 120.98613 * 129.47389 * 13 12 2 15 15 H 1.07995 * 120.00015 * 206.22343 * 14 13 12 16 16 C 1.38806 * 120.00007 * 26.22376 * 14 13 12 17 17 N 1.31622 * 119.99877 * 16.91983 * 16 14 13 18 18 Si 1.86797 * 120.00177 * 196.92146 * 16 14 13 19 19 H 1.48502 * 109.46913 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47373 * 120.00013 * 18 16 14 21 21 H 1.48507 * 109.47015 * 240.00248 * 18 16 14 22 22 C 1.47170 * 118.07200 * 309.49637 * 13 12 2 23 23 C 1.53304 * 108.37356 * 50.45227 * 22 13 12 24 24 O 1.42956 * 109.26662 * 307.77128 * 23 22 13 25 25 H 1.08998 * 109.47066 * 299.89922 * 1 2 3 26 26 H 1.08994 * 109.46830 * 59.90486 * 1 2 3 27 27 H 1.09001 * 109.46507 * 179.90122 * 1 2 3 28 28 H 1.09001 * 109.46753 * 180.10301 * 3 2 1 29 29 H 1.09007 * 109.46506 * 300.09275 * 3 2 1 30 30 H 0.97000 * 119.99701 * 0.02562 * 4 3 2 31 31 H 1.09003 * 109.46871 * 300.00146 * 7 5 4 32 32 H 1.09007 * 109.47282 * 59.99487 * 7 5 4 33 33 H 1.09004 * 112.84798 * 45.32834 * 8 7 5 34 34 H 1.08995 * 113.61544 * 334.56958 * 9 8 7 35 35 H 1.08999 * 113.61319 * 105.46695 * 9 8 7 36 36 H 1.09000 * 113.54468 * 270.81275 * 10 9 8 37 37 H 1.09001 * 113.74574 * 139.94019 * 10 9 8 38 38 H 1.08998 * 113.61290 * 254.53411 * 11 8 7 39 39 H 1.08998 * 113.61147 * 25.43531 * 11 8 7 40 40 H 1.09003 * 109.68179 * 52.07309 * 12 2 1 41 41 H 1.08998 * 109.68531 * 172.62536 * 12 2 1 42 42 H 0.97000 * 119.99981 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.64593 * 290.76022 * 22 13 12 44 44 H 1.08997 * 109.72920 * 170.19618 * 22 13 12 45 45 H 1.09009 * 109.50759 * 187.82772 * 23 22 13 46 46 H 1.08992 * 109.51384 * 67.72704 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5551 2.1325 1.1973 5 6 1.8815 3.4227 1.4104 6 8 2.5772 4.0122 0.6108 7 6 1.3822 4.1327 2.6423 8 6 1.8930 5.5748 2.6422 9 6 3.2951 5.7317 3.2541 10 6 2.7770 7.0254 3.9083 11 6 1.3686 6.4143 3.8190 12 6 2.0432 -0.7251 -1.2492 13 7 1.6981 -2.1509 -1.1330 14 6 1.0645 -2.8083 -2.1535 15 1 0.4519 -3.6720 -1.9413 16 6 1.2096 -2.3647 -3.4607 17 7 2.1913 -1.5452 -3.7724 18 14 0.0116 -2.9305 -4.7775 19 1 -0.9929 -3.8425 -4.1739 20 1 -0.6770 -1.7509 -5.3602 21 1 0.7528 -3.6485 -5.8455 22 6 2.0532 -2.8501 0.1123 23 6 1.5406 -2.0206 1.2953 24 8 2.0075 -0.6757 1.1660 25 1 -0.3633 0.5123 0.8909 26 1 -0.3633 0.5153 -0.8891 27 1 -0.3632 -1.0277 -0.0018 28 1 3.1311 1.4414 -0.0018 29 1 1.6766 1.9567 -0.8892 30 1 0.9984 1.6610 1.8366 31 1 0.2921 4.1330 2.6447 32 1 1.7473 3.6183 3.5313 33 1 1.7821 6.0631 1.6739 34 1 3.5484 4.9509 3.9711 35 1 4.0781 5.8987 2.5145 36 1 2.9089 7.9108 3.2865 37 1 3.1259 7.1704 4.9308 38 1 0.5986 7.1315 3.5348 39 1 1.0942 5.8204 4.6909 40 1 1.5716 -0.3046 -2.1375 41 1 3.1252 -0.6138 -1.3199 42 1 2.2930 -1.2355 -4.6860 43 1 3.1363 -2.9535 0.1785 44 1 1.5883 -3.8358 0.1263 45 1 1.9123 -2.4470 2.2271 46 1 0.4507 -2.0288 1.3005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107840693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:12 Heat of formation + Delta-G solvation = -65.830334 kcal Electronic energy + Delta-G solvation = -24897.482346 eV Core-core repulsion = 21401.422900 eV Total energy + Delta-G solvation = -3496.059446 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20859 -40.41996 -39.06891 -36.51828 -35.87498 -33.33069 -33.19032 -31.32709 -29.57436 -28.04895 -27.21475 -26.40970 -25.00769 -24.35260 -22.82787 -21.37417 -20.30137 -20.18785 -18.95015 -18.14327 -17.47372 -16.92300 -16.81620 -16.57061 -16.14824 -15.83912 -15.60344 -15.39197 -15.26744 -14.99682 -14.68232 -14.33533 -14.25202 -13.70728 -13.32213 -13.24571 -13.16171 -12.93483 -12.81485 -12.74091 -12.53641 -12.43763 -12.28514 -12.12044 -11.95785 -11.84662 -11.47706 -11.21894 -11.15734 -11.02371 -10.83424 -10.67182 -10.50464 -10.06013 -8.72872 -7.90456 -5.37388 1.44574 1.46855 1.56934 1.72897 2.22661 2.48152 2.79547 3.24457 3.50220 3.66550 3.79197 3.85270 3.92380 4.01715 4.04245 4.11297 4.14985 4.42338 4.46531 4.52494 4.57877 4.60474 4.67818 4.71843 4.76627 4.80580 4.91844 4.94958 4.97599 5.04544 5.06203 5.12551 5.13544 5.20684 5.21406 5.35805 5.43701 5.44512 5.52806 5.61096 5.68141 6.28670 6.37054 6.63917 7.06053 7.33664 7.75494 8.29372 9.15333 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.003218 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.753800 B = 8698.153361 C = 9193.837978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 C 0.149 3.851 4 N -0.709 5.709 5 C 0.503 3.497 6 O -0.591 6.591 7 C -0.121 4.121 8 C -0.102 4.102 9 C -0.144 4.144 10 C -0.140 4.140 11 C -0.124 4.124 12 C 0.168 3.832 13 N -0.607 5.607 14 C -0.257 4.257 15 H 0.075 0.925 16 C -0.052 4.052 17 N -0.937 5.937 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.290 1.290 21 H -0.295 1.295 22 C 0.101 3.899 23 C 0.053 3.947 24 O -0.385 6.385 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.415 0.585 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.065 0.935 41 H -0.011 1.011 42 H 0.250 0.750 43 H 0.011 0.989 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 10.728 18.577 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 C 0.024 3.976 4 N -0.361 5.361 5 C 0.292 3.708 6 O -0.472 6.472 7 C -0.160 4.160 8 C -0.121 4.121 9 C -0.181 4.181 10 C -0.177 4.177 11 C -0.161 4.161 12 C 0.041 3.959 13 N -0.332 5.332 14 C -0.387 4.387 15 H 0.092 0.908 16 C -0.247 4.247 17 N -0.583 5.583 18 Si 0.795 3.205 19 H -0.186 1.186 20 H -0.217 1.217 21 H -0.223 1.223 22 C -0.025 4.025 23 C -0.024 4.024 24 O -0.304 6.304 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.252 0.748 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.007 0.993 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.091 0.909 45 H 0.136 0.864 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.001 11.240 17.999 21.802 hybrid contribution -0.154 -0.854 -1.610 1.829 sum -5.155 10.386 16.389 20.076 Atomic orbital electron populations 1.22102 0.93818 1.02842 1.02173 1.22174 0.94719 0.90521 0.87252 1.20958 0.98398 0.89596 0.88633 1.45882 1.53542 1.11912 1.24795 1.21555 0.79383 0.81414 0.88454 1.90679 1.40182 1.67090 1.49215 1.21755 1.03892 0.95500 0.94897 1.22318 0.96932 0.94049 0.98830 1.23035 0.96493 0.99042 0.99531 1.22823 0.96962 0.96644 1.01299 1.22944 0.96711 0.98693 0.97733 1.21046 0.95221 0.84428 0.95208 1.44275 1.68702 1.05536 1.14654 1.19547 1.21150 1.11945 0.86057 0.90763 1.25811 0.98861 1.00793 0.99246 1.70198 1.31140 1.38594 1.18417 0.85213 0.78810 0.77489 0.78992 1.18637 1.21727 1.22261 1.21839 0.96992 0.96419 0.87206 1.23109 0.99167 0.81740 0.98425 1.87822 1.73338 1.26449 1.42797 0.90116 0.92801 0.91991 0.93347 0.91460 0.74773 0.86181 0.86526 0.90883 0.89503 0.93809 0.90656 0.90241 0.90796 0.88166 0.91619 0.99262 0.94114 0.97109 0.90890 0.86373 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 7.92 71.98 0.57 -4.30 16 2 C 0.09 3.47 0.76 -10.69 -0.01 3.46 16 3 C 0.15 5.26 4.82 86.38 0.42 5.67 16 4 N -0.71 -19.08 5.15 -463.06 -2.39 -21.46 16 5 C 0.50 13.89 7.83 87.66 0.69 14.57 16 6 O -0.59 -22.10 15.79 -3.02 -0.05 -22.14 16 7 C -0.12 -2.06 5.52 29.85 0.16 -1.90 16 8 C -0.10 -1.93 3.11 -10.27 -0.03 -1.96 16 9 C -0.14 -2.75 7.65 31.18 0.24 -2.51 16 10 C -0.14 -2.02 8.09 31.18 0.25 -1.77 16 11 C -0.12 -1.57 7.65 31.12 0.24 -1.33 16 12 C 0.17 8.14 4.12 86.35 0.36 8.49 16 13 N -0.61 -29.85 2.57 -697.50 -1.79 -31.64 16 14 C -0.26 -13.71 9.65 84.03 0.81 -12.90 16 15 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 16 C -0.05 -2.86 4.95 84.86 0.42 -2.44 16 17 N -0.94 -55.63 11.14 21.65 0.24 -55.39 16 18 Si 0.97 44.23 29.59 68.60 2.03 46.26 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 22 C 0.10 4.03 6.74 86.35 0.58 4.61 16 23 C 0.05 1.65 6.59 72.08 0.48 2.12 16 24 O -0.38 -13.30 9.97 -148.98 -1.49 -14.78 16 25 H 0.08 1.96 6.87 -2.39 -0.02 1.94 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 2.15 6.12 -2.39 -0.01 2.14 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 2.52 8.14 -2.38 -0.02 2.51 16 30 H 0.41 8.79 7.20 -92.71 -0.67 8.12 16 31 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.12 1.47 7.87 -2.38 -0.02 1.46 16 33 H 0.07 1.76 7.73 -2.38 -0.02 1.74 16 34 H 0.09 1.48 7.92 -2.39 -0.02 1.46 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.92 8.10 -2.39 -0.02 0.90 16 40 H 0.07 3.57 6.14 -2.39 -0.01 3.56 16 41 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 45 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 46 H 0.06 1.81 6.26 -2.39 -0.01 1.79 16 Total: -1.00 -70.07 358.83 2.02 -68.05 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.29 Total: 21.28 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 5.17 Total: 9.83 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -3.94 Total: -108.49 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.53 Total: -36.93 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -70.07 2.02 -68.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107840693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.220 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds