Wall clock time and date at job start Tue Mar 31 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53791 * 113.61426 * 2 1 4 4 C 1.53771 * 87.08252 * 220.02124 * 3 2 1 5 5 C 1.50701 * 113.61644 * 139.97990 * 4 3 2 6 6 O 1.21278 * 119.99802 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99989 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99807 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47545 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.55294 * 60.12158 * 9 8 7 11 11 C 1.53287 * 109.51699 * 180.25213 * 9 8 7 12 12 N 1.47153 * 108.38789 * 172.22715 * 11 9 8 13 13 C 1.36937 * 120.98613 * 129.47389 * 12 11 9 14 14 H 1.07995 * 120.00015 * 206.22343 * 13 12 11 15 15 C 1.38806 * 120.00007 * 26.22376 * 13 12 11 16 16 N 1.31622 * 119.99877 * 16.91983 * 15 13 12 17 17 Si 1.86797 * 120.00177 * 196.92146 * 15 13 12 18 18 H 1.48502 * 109.46913 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47373 * 120.00013 * 17 15 13 20 20 H 1.48507 * 109.47015 * 240.00248 * 17 15 13 21 21 C 1.47170 * 118.07200 * 309.49637 * 12 11 9 22 22 C 1.53304 * 108.37356 * 50.45227 * 21 12 11 23 23 O 1.42956 * 109.26662 * 307.77128 * 22 21 12 24 24 C 1.53783 * 87.08595 * 25.43146 * 4 3 2 25 25 H 1.08999 * 109.47352 * 59.99932 * 1 2 3 26 26 H 1.09002 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47420 * 299.99720 * 1 2 3 28 28 H 1.08998 * 112.91157 * 131.25342 * 2 1 3 29 29 H 1.08993 * 113.61116 * 105.46815 * 3 2 1 30 30 H 1.09001 * 113.60818 * 334.57232 * 3 2 1 31 31 H 1.09003 * 113.61357 * 270.79825 * 4 3 2 32 32 H 0.97000 * 120.00492 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.47747 * 59.99903 * 8 7 5 34 34 H 1.09007 * 109.47404 * 299.99771 * 8 7 5 35 35 H 1.09000 * 109.47007 * 299.87480 * 10 9 8 36 36 H 1.08994 * 109.46826 * 59.87832 * 10 9 8 37 37 H 1.08997 * 109.46996 * 179.87995 * 10 9 8 38 38 H 1.09003 * 109.68179 * 291.94499 * 11 9 8 39 39 H 1.08998 * 109.68531 * 52.49726 * 11 9 8 40 40 H 0.97000 * 119.99981 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.64593 * 290.76022 * 21 12 11 42 42 H 1.08997 * 109.72920 * 170.19618 * 21 12 11 43 43 H 1.09009 * 109.50759 * 187.82772 * 22 21 12 44 44 H 1.08992 * 109.51384 * 67.72704 * 22 21 12 45 45 H 1.08999 * 113.61201 * 89.11691 * 24 4 3 46 46 H 1.08999 * 113.61701 * 220.02316 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 3.1922 0.8663 -0.9876 5 6 3.5406 1.8331 -2.0899 6 8 3.0073 2.9215 -2.1329 7 7 4.4455 1.4885 -3.0274 8 6 4.7845 2.4285 -4.0986 9 6 5.8277 1.7954 -5.0216 10 6 5.2592 0.5136 -5.6338 11 6 6.1878 2.7807 -6.1393 12 7 7.3207 2.2276 -6.8984 13 6 7.2788 2.1411 -8.2644 14 1 7.8661 1.3932 -8.7764 15 6 6.4816 3.0147 -8.9911 16 7 6.0336 4.1180 -8.4303 17 14 6.0445 2.6244 -10.7648 18 1 6.6685 1.3350 -11.1562 19 1 4.5693 2.5222 -10.9000 20 1 6.5488 3.7063 -11.6484 21 6 8.5002 1.7695 -6.1470 22 6 8.0271 0.8344 -5.0281 23 8 7.0040 1.4850 -4.2706 24 6 2.1460 -0.1838 -1.3970 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9543 -0.6620 0.7548 29 1 2.5649 1.7024 0.9625 30 1 1.4943 2.1704 -0.4288 31 1 4.0716 0.4424 -0.5028 32 1 4.8729 0.6184 -2.9924 33 1 5.1897 3.3428 -3.6651 34 1 3.8881 2.6646 -4.6722 35 1 5.0076 -0.1883 -4.8386 36 1 4.3625 0.7510 -6.2061 37 1 6.0026 0.0649 -6.2926 38 1 5.3322 2.9134 -6.8015 39 1 6.4697 3.7403 -5.7061 40 1 5.4768 4.7286 -8.9382 41 1 9.0155 2.6274 -5.7150 42 1 9.1752 1.2325 -6.8133 43 1 8.8664 0.5942 -4.3752 44 1 7.6304 -0.0827 -5.4634 45 1 1.4945 0.1421 -2.2079 46 1 2.5650 -1.1763 -1.5623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107857724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:52 Heat of formation + Delta-G solvation = -46.093908 kcal Electronic energy + Delta-G solvation = -25087.649069 eV Core-core repulsion = 21592.445459 eV Total energy + Delta-G solvation = -3495.203610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35480 -39.13006 -37.69756 -34.87404 -34.31389 -31.80024 -31.26835 -30.19524 -27.96425 -26.67919 -25.90445 -25.74440 -23.79013 -23.23062 -21.21296 -20.23203 -19.50197 -18.66318 -17.26570 -16.92700 -15.93447 -15.84356 -15.36155 -15.15235 -14.66534 -14.42111 -14.10545 -13.91195 -13.67460 -13.51744 -13.25216 -13.06193 -12.76040 -12.62920 -12.41872 -12.24751 -11.94056 -11.59944 -11.40383 -11.20069 -11.05009 -11.00076 -10.84129 -10.67692 -10.67341 -10.39976 -10.32203 -10.24592 -9.99977 -9.63118 -9.46535 -9.04208 -8.76664 -8.55490 -6.75642 -5.85965 -3.29391 2.80281 3.31893 3.39823 3.42105 3.42265 4.24269 4.30599 4.41597 4.42338 4.56998 4.60863 5.08705 5.15778 5.21215 5.31173 5.33758 5.47354 5.50608 5.52220 5.53108 5.59055 5.66693 5.68033 5.82725 5.90553 5.91352 5.93082 6.02335 6.06758 6.10587 6.13679 6.31200 6.32664 6.46264 6.58452 6.70542 6.76775 6.81272 7.06097 7.45663 7.69626 7.75486 7.87350 8.31398 8.44590 9.09309 9.72437 10.29539 11.21997 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.003496 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.607336 B = 8006.639227 C = 8516.627974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.139 4.139 5 C 0.517 3.483 6 O -0.546 6.546 7 N -0.716 5.716 8 C 0.139 3.861 9 C 0.078 3.922 10 C -0.161 4.161 11 C 0.160 3.840 12 N -0.591 5.591 13 C -0.254 4.254 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.290 1.290 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.402 0.598 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.029 0.971 40 H 0.255 0.745 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 -10.657 14.716 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.151 4.151 4 C -0.160 4.160 5 C 0.303 3.697 6 O -0.424 6.424 7 N -0.366 5.366 8 C 0.015 3.985 9 C 0.037 3.963 10 C -0.218 4.218 11 C 0.033 3.967 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.216 1.216 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.304 6.304 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.236 0.764 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.198 -9.686 14.747 18.701 hybrid contribution 0.176 -0.546 -1.278 1.401 sum -6.022 -10.232 13.469 17.954 Atomic orbital electron populations 1.21714 0.94627 1.01561 1.02033 1.22479 0.95899 0.97739 0.97334 1.22898 0.96897 0.96859 0.98418 1.22725 0.99200 0.97507 0.96571 1.20448 0.78869 0.87716 0.82640 1.90681 1.52867 1.23215 1.75658 1.46005 1.42686 1.20030 1.27922 1.21344 0.97045 0.92385 0.87735 1.22550 0.84618 0.96529 0.92581 1.22197 1.02029 0.97270 1.00349 1.21287 0.93147 0.91587 0.90643 1.44014 1.11530 1.73445 1.02480 1.19195 1.26279 1.11611 0.81223 0.91377 1.25044 1.01804 0.94817 0.97918 1.70027 1.37900 1.09862 1.36721 0.86223 0.78092 0.77776 0.84690 1.20252 1.21458 1.21646 1.21602 0.90859 0.96014 0.93266 1.23031 0.90142 0.95455 0.94558 1.87813 1.25892 1.79656 1.37013 1.22954 0.96956 0.98111 0.97675 0.92419 0.92720 0.92479 0.89151 0.91226 0.88610 0.87161 0.76371 0.90984 0.90240 0.93928 0.91946 0.90851 0.88571 0.95298 0.93473 0.95670 0.92042 0.90215 0.93404 0.89559 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.71 37.15 0.36 -0.72 16 2 C -0.12 -0.94 4.36 -89.80 -0.39 -1.33 16 3 C -0.11 -1.14 6.97 -25.92 -0.18 -1.32 16 4 C -0.14 -1.46 4.15 -90.96 -0.38 -1.84 16 5 C 0.52 7.62 7.35 -10.99 -0.08 7.54 16 6 O -0.55 -10.21 15.90 5.56 0.09 -10.12 16 7 N -0.72 -10.38 5.15 -60.29 -0.31 -10.69 16 8 C 0.14 2.42 4.82 -4.04 -0.02 2.40 16 9 C 0.08 1.45 0.76 -90.47 -0.07 1.39 16 10 C -0.16 -2.74 7.92 37.16 0.29 -2.44 16 11 C 0.16 3.73 4.11 -3.54 -0.01 3.72 16 12 N -0.59 -14.36 2.57 -171.81 -0.44 -14.80 16 13 C -0.25 -6.73 9.65 -15.06 -0.15 -6.87 16 14 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 15 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 16 N -0.90 -25.66 11.14 55.49 0.62 -25.04 16 17 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.11 2.23 6.74 -3.52 -0.02 2.20 16 22 C 0.05 0.79 6.59 37.31 0.25 1.04 16 23 O -0.38 -7.05 9.97 -35.23 -0.35 -7.40 16 24 C -0.12 -1.07 7.18 -25.91 -0.19 -1.26 16 25 H 0.06 0.48 7.94 -51.93 -0.41 0.07 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 1.15 7.39 -51.93 -0.38 0.77 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.40 5.09 7.21 -40.82 -0.29 4.80 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.04 0.60 6.88 -51.93 -0.36 0.24 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.36 6.11 -51.93 -0.32 1.04 16 38 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 43 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 44 H 0.05 0.79 6.26 -51.93 -0.32 0.47 16 45 H 0.09 0.87 7.91 -51.93 -0.41 0.46 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -30.65 358.59 -8.55 -39.20 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.85 Total: 4.77 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.67 Total: 2.50 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.13 Total: -50.54 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.26 Total: -17.52 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.65 -8.55 -39.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107857724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.891 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds