Wall clock time and date at job start Tue Mar 31 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53791 * 113.61426 * 2 1 4 4 C 1.53771 * 87.08252 * 220.02124 * 3 2 1 5 5 C 1.50701 * 113.61644 * 139.97990 * 4 3 2 6 6 O 1.21278 * 119.99802 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99989 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99807 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47545 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.55294 * 60.12158 * 9 8 7 11 11 C 1.53287 * 109.51699 * 180.25213 * 9 8 7 12 12 N 1.47153 * 108.38789 * 172.22715 * 11 9 8 13 13 C 1.36937 * 120.98613 * 129.47389 * 12 11 9 14 14 H 1.07995 * 120.00015 * 206.22343 * 13 12 11 15 15 C 1.38806 * 120.00007 * 26.22376 * 13 12 11 16 16 N 1.31622 * 119.99877 * 16.91983 * 15 13 12 17 17 Si 1.86797 * 120.00177 * 196.92146 * 15 13 12 18 18 H 1.48502 * 109.46913 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47373 * 120.00013 * 17 15 13 20 20 H 1.48507 * 109.47015 * 240.00248 * 17 15 13 21 21 C 1.47170 * 118.07200 * 309.49637 * 12 11 9 22 22 C 1.53304 * 108.37356 * 50.45227 * 21 12 11 23 23 O 1.42956 * 109.26662 * 307.77128 * 22 21 12 24 24 C 1.53783 * 87.08595 * 25.43146 * 4 3 2 25 25 H 1.08999 * 109.47352 * 59.99932 * 1 2 3 26 26 H 1.09002 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47420 * 299.99720 * 1 2 3 28 28 H 1.08998 * 112.91157 * 131.25342 * 2 1 3 29 29 H 1.08993 * 113.61116 * 105.46815 * 3 2 1 30 30 H 1.09001 * 113.60818 * 334.57232 * 3 2 1 31 31 H 1.09003 * 113.61357 * 270.79825 * 4 3 2 32 32 H 0.97000 * 120.00492 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.47747 * 59.99903 * 8 7 5 34 34 H 1.09007 * 109.47404 * 299.99771 * 8 7 5 35 35 H 1.09000 * 109.47007 * 299.87480 * 10 9 8 36 36 H 1.08994 * 109.46826 * 59.87832 * 10 9 8 37 37 H 1.08997 * 109.46996 * 179.87995 * 10 9 8 38 38 H 1.09003 * 109.68179 * 291.94499 * 11 9 8 39 39 H 1.08998 * 109.68531 * 52.49726 * 11 9 8 40 40 H 0.97000 * 119.99981 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.64593 * 290.76022 * 21 12 11 42 42 H 1.08997 * 109.72920 * 170.19618 * 21 12 11 43 43 H 1.09009 * 109.50759 * 187.82772 * 22 21 12 44 44 H 1.08992 * 109.51384 * 67.72704 * 22 21 12 45 45 H 1.08999 * 113.61201 * 89.11691 * 24 4 3 46 46 H 1.08999 * 113.61701 * 220.02316 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 3.1922 0.8663 -0.9876 5 6 3.5406 1.8331 -2.0899 6 8 3.0073 2.9215 -2.1329 7 7 4.4455 1.4885 -3.0274 8 6 4.7845 2.4285 -4.0986 9 6 5.8277 1.7954 -5.0216 10 6 5.2592 0.5136 -5.6338 11 6 6.1878 2.7807 -6.1393 12 7 7.3207 2.2276 -6.8984 13 6 7.2788 2.1411 -8.2644 14 1 7.8661 1.3932 -8.7764 15 6 6.4816 3.0147 -8.9911 16 7 6.0336 4.1180 -8.4303 17 14 6.0445 2.6244 -10.7648 18 1 6.6685 1.3350 -11.1562 19 1 4.5693 2.5222 -10.9000 20 1 6.5488 3.7063 -11.6484 21 6 8.5002 1.7695 -6.1470 22 6 8.0271 0.8344 -5.0281 23 8 7.0040 1.4850 -4.2706 24 6 2.1460 -0.1838 -1.3970 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9543 -0.6620 0.7548 29 1 2.5649 1.7024 0.9625 30 1 1.4943 2.1704 -0.4288 31 1 4.0716 0.4424 -0.5028 32 1 4.8729 0.6184 -2.9924 33 1 5.1897 3.3428 -3.6651 34 1 3.8881 2.6646 -4.6722 35 1 5.0076 -0.1883 -4.8386 36 1 4.3625 0.7510 -6.2061 37 1 6.0026 0.0649 -6.2926 38 1 5.3322 2.9134 -6.8015 39 1 6.4697 3.7403 -5.7061 40 1 5.4768 4.7286 -8.9382 41 1 9.0155 2.6274 -5.7150 42 1 9.1752 1.2325 -6.8133 43 1 8.8664 0.5942 -4.3752 44 1 7.6304 -0.0827 -5.4634 45 1 1.4945 0.1421 -2.2079 46 1 2.5650 -1.1763 -1.5623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107857724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:51 Heat of formation + Delta-G solvation = -65.757243 kcal Electronic energy + Delta-G solvation = -25088.501735 eV Core-core repulsion = 21592.445459 eV Total energy + Delta-G solvation = -3496.056277 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45597 -40.57324 -38.74434 -36.52467 -35.89749 -33.28162 -33.15942 -30.95606 -29.58430 -28.12536 -27.53625 -26.53674 -25.06422 -24.78760 -22.82335 -21.35466 -20.40941 -20.12868 -18.94639 -18.23935 -17.45948 -16.92669 -16.79021 -16.50610 -16.11538 -15.83728 -15.59295 -15.40923 -15.21886 -14.68778 -14.49079 -14.32776 -14.15198 -13.71288 -13.43323 -13.39170 -13.18459 -13.06601 -12.93413 -12.81633 -12.54173 -12.44140 -12.19234 -12.11353 -11.96366 -11.84578 -11.74117 -11.41496 -11.15554 -11.07661 -10.82076 -10.61855 -10.50572 -10.09555 -8.73053 -7.90552 -5.37500 1.44593 1.46883 1.56988 1.64324 2.20052 2.47999 2.78676 3.24356 3.49624 3.54051 3.65791 3.78404 3.85519 3.93467 4.01095 4.10654 4.24787 4.41948 4.46445 4.53299 4.56675 4.62919 4.68905 4.71203 4.79289 4.84066 4.88747 4.93709 4.96534 4.97071 5.04240 5.11916 5.14771 5.20231 5.23436 5.35088 5.40818 5.41363 5.52289 5.60915 5.64880 6.28457 6.36474 6.60396 7.05884 7.28530 7.75311 8.29233 9.15254 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.003496 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.607336 B = 8006.639227 C = 8516.627974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.122 4.122 4 C -0.134 4.134 5 C 0.513 3.487 6 O -0.593 6.593 7 N -0.704 5.704 8 C 0.148 3.852 9 C 0.095 3.905 10 C -0.151 4.151 11 C 0.168 3.832 12 N -0.607 5.607 13 C -0.257 4.257 14 H 0.075 0.925 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.291 1.291 20 H -0.295 1.295 21 C 0.101 3.899 22 C 0.053 3.947 23 O -0.385 6.385 24 C -0.116 4.116 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.415 0.585 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.066 0.934 39 H -0.010 1.010 40 H 0.250 0.750 41 H 0.011 0.989 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 -14.149 16.113 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.160 4.160 4 C -0.155 4.155 5 C 0.301 3.699 6 O -0.474 6.474 7 N -0.355 5.355 8 C 0.023 3.977 9 C 0.054 3.946 10 C -0.209 4.209 11 C 0.041 3.959 12 N -0.332 5.332 13 C -0.387 4.387 14 H 0.092 0.908 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.795 3.205 18 H -0.186 1.186 19 H -0.217 1.217 20 H -0.223 1.223 21 C -0.024 4.024 22 C -0.025 4.025 23 O -0.304 6.304 24 C -0.154 4.154 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.252 0.748 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.008 0.992 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.808 -13.237 16.166 21.686 hybrid contribution 0.142 0.596 -1.686 1.794 sum -5.666 -12.640 14.480 20.038 Atomic orbital electron populations 1.21726 0.94489 1.02300 1.01582 1.22473 0.96032 0.96290 0.97271 1.22923 0.96793 0.97679 0.98555 1.22880 1.00622 0.96933 0.95033 1.21316 0.77719 0.87778 0.83045 1.90666 1.54388 1.25562 1.76765 1.45854 1.42743 1.19907 1.27046 1.20990 0.96132 0.92299 0.88267 1.22169 0.85197 0.96097 0.91171 1.22096 1.01094 0.96622 1.01072 1.21043 0.91945 0.91544 0.91351 1.44273 1.13089 1.73419 1.02373 1.19548 1.25579 1.11099 0.82498 0.90755 1.25811 1.02333 0.94792 1.01755 1.70198 1.39004 1.11013 1.38124 0.85212 0.77421 0.77803 0.80060 1.18617 1.21735 1.22261 1.21838 0.89865 0.96356 0.94381 1.23114 0.90843 0.94495 0.94001 1.87822 1.25921 1.79802 1.36883 1.22965 0.96080 0.98543 0.97762 0.93874 0.91323 0.92055 0.86709 0.90211 0.91396 0.84257 0.74779 0.93211 0.91449 0.90221 0.92808 0.91932 0.91610 0.99224 0.94115 0.97089 0.90870 0.86363 0.91988 0.91271 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.71 71.98 0.70 -1.20 16 2 C -0.10 -1.36 4.36 -10.26 -0.04 -1.40 16 3 C -0.12 -2.28 6.97 31.12 0.22 -2.06 16 4 C -0.13 -2.50 4.15 -11.02 -0.05 -2.55 16 5 C 0.51 14.79 7.35 87.66 0.64 15.44 16 6 O -0.59 -22.82 15.90 -3.02 -0.05 -22.87 16 7 N -0.70 -19.56 5.15 -463.06 -2.39 -21.95 16 8 C 0.15 5.28 4.82 86.38 0.42 5.70 16 9 C 0.09 3.51 0.76 -10.69 -0.01 3.50 16 10 C -0.15 -4.89 7.92 71.98 0.57 -4.32 16 11 C 0.17 8.16 4.11 86.35 0.36 8.52 16 12 N -0.61 -29.87 2.57 -697.50 -1.79 -31.66 16 13 C -0.26 -13.73 9.65 84.03 0.81 -12.92 16 14 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 15 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 16 N -0.94 -55.63 11.14 21.65 0.24 -55.39 16 17 Si 0.97 44.23 29.59 68.60 2.03 46.26 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 21 C 0.10 4.04 6.74 86.35 0.58 4.62 16 22 C 0.05 1.65 6.59 72.08 0.48 2.13 16 23 O -0.38 -13.39 9.97 -148.98 -1.49 -14.88 16 24 C -0.12 -1.75 7.18 31.12 0.22 -1.53 16 25 H 0.04 0.69 7.94 -2.39 -0.02 0.67 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.67 7.39 -2.39 -0.02 1.65 16 31 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.41 9.24 7.21 -92.71 -0.67 8.57 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.55 8.14 -2.38 -0.02 2.54 16 35 H 0.08 1.97 6.88 -2.39 -0.02 1.96 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 2.18 6.11 -2.39 -0.01 2.17 16 38 H 0.07 3.58 6.14 -2.39 -0.01 3.57 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 43 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 44 H 0.06 1.82 6.26 -2.39 -0.01 1.80 16 45 H 0.07 1.31 7.91 -2.39 -0.02 1.29 16 46 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -69.81 358.59 2.17 -67.64 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.29 Total: 21.36 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.31 Total: 11.48 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -3.93 Total: -109.00 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.53 Total: -37.75 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.81 2.17 -67.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107857724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.887 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds