Wall clock time and date at job start Tue Mar 31 2020 03:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47283 * 2 1 4 4 N 1.46500 * 109.47370 * 240.00109 * 2 1 3 5 5 C 1.34781 * 119.99836 * 84.99792 * 4 2 1 6 6 N 1.34771 * 119.99641 * 180.02562 * 5 4 2 7 7 O 1.21586 * 119.99825 * 0.02562 * 5 4 2 8 8 C 1.50701 * 109.47047 * 119.99998 * 2 1 3 9 9 O 1.21282 * 119.99917 * 119.99923 * 8 2 1 10 10 N 1.34777 * 119.99884 * 299.72441 * 8 2 1 11 11 C 1.46499 * 119.99724 * 180.27234 * 10 8 2 12 12 H 1.08998 * 110.56274 * 36.93853 * 11 10 8 13 13 C 1.54857 * 110.62592 * 160.00589 * 11 10 8 14 14 C 1.55851 * 103.44260 * 118.49064 * 13 11 10 15 15 H 1.08999 * 116.12059 * 159.14836 * 14 13 11 16 16 C 1.55838 * 105.06533 * 288.17864 * 14 13 11 17 17 C 1.54845 * 103.44661 * 71.82428 * 16 14 13 18 18 C 1.55841 * 110.63225 * 274.03329 * 11 10 8 19 19 H 1.09007 * 115.56062 * 82.69589 * 18 11 10 20 20 N 1.50230 * 101.05426 * 208.57257 * 18 11 10 21 21 C 1.36935 * 130.84375 * 233.94657 * 20 18 11 22 22 H 1.08008 * 119.99408 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00727 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99338 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00338 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46846 * 89.99847 * 25 23 21 27 27 H 1.48499 * 109.47082 * 209.99435 * 25 23 21 28 28 H 1.48496 * 109.47043 * 329.99820 * 25 23 21 29 29 H 1.08999 * 109.46569 * 59.99850 * 1 2 3 30 30 H 1.08994 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47123 * 299.99995 * 1 2 3 32 32 H 0.96996 * 119.99911 * 265.00020 * 4 2 1 33 33 H 0.97005 * 120.00453 * 0.02562 * 6 5 4 34 34 H 0.97003 * 119.99741 * 179.97438 * 6 5 4 35 35 H 0.96994 * 120.00150 * 0.28002 * 10 8 2 36 36 H 1.08997 * 110.62974 * 236.98507 * 13 11 10 37 37 H 1.08998 * 110.62295 * 0.02562 * 13 11 10 38 38 H 1.08998 * 110.62819 * 190.31818 * 16 14 13 39 39 H 1.09011 * 110.62722 * 313.17455 * 16 14 13 40 40 H 1.09005 * 110.62654 * 241.50849 * 17 16 14 41 41 H 1.09002 * 110.62548 * 118.49400 * 17 16 14 42 42 H 0.97005 * 119.99432 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 7 2.5959 -0.6536 -3.4576 7 8 1.8583 1.1617 -2.4116 8 6 2.0324 -0.7104 1.2305 9 8 2.7296 -1.6965 1.1192 10 7 1.7113 -0.2467 2.4546 11 6 2.2046 -0.9339 3.6507 12 1 3.2170 -1.3041 3.4894 13 6 2.1535 0.0064 4.8801 14 6 1.1749 -0.7201 5.8514 15 1 1.2478 -0.4422 6.9028 16 6 -0.2343 -0.5518 5.2075 17 6 -0.1831 -1.4920 3.9782 18 6 1.2501 -2.1004 4.0467 19 1 1.4010 -3.0354 3.5070 20 7 1.4675 -2.1587 5.5321 21 6 1.8224 -3.2020 6.3449 22 1 1.9927 -4.1816 5.9229 23 6 1.9624 -3.0011 7.7112 24 7 1.7543 -1.8074 8.2255 25 14 2.4459 -4.4244 8.8200 26 1 3.9256 -4.4864 8.9290 27 1 1.8583 -4.2229 10.1688 28 1 1.9383 -5.6954 8.2437 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 2.8260 -1.5950 -3.4143 34 1 2.6882 -0.1698 -4.2933 35 1 1.1537 0.5419 2.5436 36 1 3.1410 0.1029 5.3310 37 1 1.7607 0.9838 4.5998 38 1 -1.0135 -0.8683 5.9008 39 1 -0.3940 0.4810 4.8977 40 1 -0.3163 -0.9261 3.0562 41 1 -0.9370 -2.2748 4.0618 42 1 1.8525 -1.6669 9.1802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109188678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:04 Heat of formation + Delta-G solvation = -46.166764 kcal Electronic energy + Delta-G solvation = -24849.406587 eV Core-core repulsion = 21250.659474 eV Total energy + Delta-G solvation = -3598.747113 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73933 -40.87138 -39.71030 -35.96895 -35.53895 -34.69049 -34.19142 -31.44941 -30.97466 -30.46566 -29.03723 -26.29917 -25.36040 -22.98679 -22.36298 -21.60303 -21.06492 -20.16929 -19.70229 -18.93530 -18.41681 -17.52911 -16.89562 -16.80033 -16.61807 -16.18644 -15.88919 -15.69732 -15.48126 -15.23549 -14.58500 -14.12040 -13.92961 -13.64598 -13.48308 -13.23264 -13.19051 -12.87343 -12.77067 -12.61971 -12.56167 -12.34710 -11.99046 -11.86732 -11.54466 -11.48077 -11.18455 -11.04077 -10.85704 -10.76842 -10.68272 -10.09241 -9.98762 -8.84540 -7.78718 -5.17748 1.46801 1.47848 1.55500 1.56482 1.67761 2.14589 2.33940 2.51917 3.34681 3.47951 3.59076 3.70819 3.98038 4.08724 4.12369 4.16936 4.20365 4.44537 4.49280 4.63225 4.71407 4.74489 4.83149 4.85130 5.00088 5.10162 5.17965 5.22627 5.27058 5.35412 5.37569 5.49502 5.55756 5.76133 5.85149 5.91193 6.04961 6.29479 6.56542 7.02511 7.06635 7.22697 7.62998 7.70678 8.56394 9.28030 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.003455 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.770790 B = 8101.574434 C = 8483.130271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.150 3.850 3 H 0.115 0.885 4 N -0.725 5.725 5 C 0.705 3.295 6 N -0.847 5.847 7 O -0.637 6.637 8 C 0.511 3.489 9 O -0.575 6.575 10 N -0.691 5.691 11 C 0.147 3.853 12 H 0.054 0.946 13 C -0.127 4.127 14 C 0.136 3.864 15 H 0.119 0.881 16 C -0.127 4.127 17 C -0.116 4.116 18 C 0.121 3.879 19 H 0.068 0.932 20 N -0.619 5.619 21 C -0.223 4.223 22 H 0.071 0.929 23 C -0.063 4.063 24 N -0.944 5.944 25 Si 0.974 3.026 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.276 1.276 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.423 0.577 35 H 0.416 0.584 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 5.337 -19.075 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.133 0.867 4 N -0.383 5.383 5 C 0.403 3.597 6 N -0.416 5.416 7 O -0.519 6.519 8 C 0.297 3.703 9 O -0.455 6.455 10 N -0.343 5.343 11 C 0.040 3.960 12 H 0.072 0.928 13 C -0.166 4.166 14 C 0.030 3.970 15 H 0.136 0.864 16 C -0.166 4.166 17 C -0.155 4.155 18 C 0.013 3.987 19 H 0.086 0.914 20 N -0.341 5.341 21 C -0.353 4.353 22 H 0.089 0.911 23 C -0.256 4.256 24 N -0.593 5.593 25 Si 0.803 3.197 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.201 1.201 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.248 0.752 33 H 0.243 0.757 34 H 0.256 0.744 35 H 0.254 0.746 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.690 5.448 -18.742 19.702 hybrid contribution 0.566 -1.386 0.710 1.657 sum -2.124 4.061 -18.032 18.605 Atomic orbital electron populations 1.22142 0.91201 1.03486 1.04454 1.20591 0.96607 0.97174 0.81586 0.86703 1.44775 1.71088 1.14615 1.07804 1.16034 0.77908 0.84422 0.81314 1.42773 1.71983 1.15729 1.11157 1.90935 1.59474 1.16064 1.85455 1.20928 0.79638 0.84304 0.85444 1.90689 1.39649 1.28082 1.87054 1.45891 1.52542 1.31606 1.04244 1.22111 0.96755 0.93434 0.83687 0.92770 1.23122 1.00390 0.98093 0.95012 1.23695 0.91651 0.82338 0.99293 0.86369 1.22955 0.97923 0.99141 0.96577 1.22822 0.95825 0.98482 0.98370 1.23321 0.95135 0.95425 0.84846 0.91359 1.46746 1.79039 1.06739 1.01578 1.19296 1.37789 0.89230 0.88944 0.91066 1.25394 1.03398 0.99228 0.97593 1.69673 1.57037 1.21432 1.11187 0.85131 0.77452 0.78952 0.78119 1.21709 1.21873 1.20088 0.91100 0.91708 0.88753 0.75237 0.75693 0.74402 0.74597 0.93600 0.88395 0.94813 0.89324 0.89046 0.93994 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.38 71.98 0.68 -1.77 16 2 C 0.15 3.00 2.98 44.25 0.13 3.13 16 3 H 0.12 2.33 7.58 -2.39 -0.02 2.31 16 4 N -0.73 -14.22 4.96 -461.40 -2.29 -16.51 16 5 C 0.71 14.68 8.80 179.05 1.58 16.26 16 6 N -0.85 -10.02 8.88 -184.75 -1.64 -11.66 16 7 O -0.64 -18.27 16.84 -3.99 -0.07 -18.34 16 8 C 0.51 13.07 7.21 87.66 0.63 13.70 16 9 O -0.58 -19.28 15.56 -3.04 -0.05 -19.33 16 10 N -0.69 -16.80 3.53 -434.91 -1.54 -18.33 16 11 C 0.15 5.06 3.08 46.61 0.14 5.20 16 12 H 0.05 2.20 7.70 -2.39 -0.02 2.18 16 13 C -0.13 -4.44 6.20 32.21 0.20 -4.24 16 14 C 0.14 5.92 4.72 46.23 0.22 6.14 16 15 H 0.12 6.10 5.52 -2.39 -0.01 6.09 16 16 C -0.13 -4.42 6.44 32.21 0.21 -4.21 16 17 C -0.12 -3.78 6.32 32.21 0.20 -3.57 16 18 C 0.12 4.80 5.35 46.23 0.25 5.04 16 19 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 20 N -0.62 -30.58 2.98 -615.26 -1.84 -32.41 16 21 C -0.22 -12.47 10.59 84.03 0.89 -11.58 16 22 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 24 N -0.94 -54.31 10.47 21.65 0.23 -54.09 16 25 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 28 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.10 7.57 -2.39 -0.02 1.08 16 32 H 0.41 7.53 7.80 -92.71 -0.72 6.80 16 33 H 0.41 2.67 8.84 -92.70 -0.82 1.85 16 34 H 0.42 3.89 8.93 -92.71 -0.83 3.07 16 35 H 0.42 7.26 7.44 -92.71 -0.69 6.57 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 2.58 7.34 -2.39 -0.02 2.56 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 2.34 7.82 -2.38 -0.02 2.32 16 40 H 0.09 2.24 6.48 -2.38 -0.02 2.23 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 Total: -1.00 -74.18 338.69 -1.54 -75.71 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -1.97 Total: 26.13 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 5.59 Total: 21.03 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -7.07 Total: -133.00 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.11 Total: -37.67 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.18 -1.54 -75.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109188678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.548 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds