Wall clock time and date at job start Tue Mar 31 2020 03:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21592 * 119.99797 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99902 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99966 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47273 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00046 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00159 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00021 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.56080 * 32.09721 * 10 9 7 12 12 C 1.54854 * 110.62368 * 269.02374 * 10 9 7 13 13 C 1.55843 * 103.44489 * 241.50966 * 12 10 9 14 14 H 1.09003 * 115.56128 * 159.56404 * 13 12 10 15 15 C 1.55846 * 105.06689 * 288.17623 * 13 12 10 16 16 C 1.54854 * 103.44560 * 71.82428 * 15 13 12 17 17 C 1.55847 * 110.62449 * 155.00013 * 10 9 7 18 18 H 1.08997 * 115.56376 * 318.91865 * 17 10 9 19 19 N 1.50238 * 101.05125 * 85.55202 * 17 10 9 20 20 C 1.36939 * 130.83894 * 233.93323 * 19 17 10 21 21 H 1.08000 * 119.99475 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00195 * 180.02562 * 20 19 17 23 23 N 1.31619 * 119.99765 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99956 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47093 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47249 * 119.99466 * 24 22 20 27 27 H 1.48493 * 109.47015 * 239.99564 * 24 22 20 28 28 H 1.09000 * 109.47212 * 300.00355 * 1 2 3 29 29 H 1.09001 * 109.46577 * 60.00430 * 1 2 3 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00050 * 179.72114 * 2 1 3 32 32 H 0.96999 * 120.00050 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.47136 * 300.00071 * 6 5 3 34 34 H 1.08996 * 109.47174 * 59.99413 * 6 5 3 35 35 H 0.97003 * 119.99677 * 359.97438 * 9 7 6 36 36 H 1.08999 * 110.62577 * 359.97438 * 12 10 9 37 37 H 1.09002 * 110.62637 * 123.02069 * 12 10 9 38 38 H 1.08998 * 110.62733 * 313.33466 * 15 13 12 39 39 H 1.09001 * 110.76258 * 190.37905 * 15 13 12 40 40 H 1.08997 * 110.62641 * 241.51502 * 16 15 13 41 41 H 1.08994 * 110.76215 * 118.55216 * 16 15 13 42 42 H 0.97004 * 119.99759 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2191 2.4359 0.0000 7 6 5.7008 2.1606 0.0001 8 8 6.1051 1.0172 0.0001 9 7 6.5766 3.1851 0.0001 10 6 8.0169 2.9174 -0.0003 11 1 8.2351 1.9976 -0.5429 12 6 8.5580 2.8416 1.4486 13 6 9.5924 4.0056 1.5104 14 1 9.8421 4.3603 2.5104 15 6 10.7974 3.5230 0.6479 16 6 10.2562 3.5988 -0.8010 17 6 8.7980 4.1169 -0.6166 18 1 8.3449 4.5701 -1.4983 19 7 8.9576 5.0045 0.5850 20 6 8.6270 6.3194 0.7774 21 1 8.1704 6.8838 -0.0222 22 6 8.8796 6.9270 1.9996 23 7 9.4365 6.2391 2.9738 24 14 8.4292 8.7208 2.2617 25 1 7.8213 9.2649 1.0208 26 1 7.4564 8.8289 3.3785 27 1 9.6522 9.4948 2.5938 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 0.0041 32 1 3.9717 0.3272 0.0005 33 1 3.9561 3.0070 -0.8905 34 1 3.9554 3.0081 0.8894 35 1 6.2532 4.0996 -0.0003 36 1 7.7548 3.0036 2.1674 37 1 9.0468 1.8837 1.6263 38 1 11.0670 2.4984 0.9040 39 1 11.6529 4.1867 0.7735 40 1 10.2574 2.6118 -1.2635 41 1 10.8408 4.3008 -1.3956 42 1 9.6127 6.6636 3.8281 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110626823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:21 Heat of formation + Delta-G solvation = -42.420246 kcal Electronic energy + Delta-G solvation = -24301.729626 eV Core-core repulsion = 20703.144974 eV Total energy + Delta-G solvation = -3598.584652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51121 -40.90167 -39.81043 -35.71636 -35.53895 -35.25030 -34.40463 -30.95263 -30.74370 -29.98321 -28.63025 -26.58677 -26.01283 -23.00428 -21.96281 -21.52780 -21.35227 -20.32928 -19.85752 -18.84144 -17.94164 -17.54133 -17.05286 -16.92112 -16.69585 -16.04671 -15.79323 -15.60277 -15.30001 -15.13635 -14.59525 -14.30679 -14.13790 -13.73161 -13.65472 -13.46083 -13.01404 -12.89477 -12.85775 -12.76080 -12.67120 -12.07771 -11.92161 -11.85650 -11.69787 -11.53255 -11.27002 -10.96090 -10.92986 -10.69910 -10.49802 -9.99931 -9.83674 -8.84990 -7.74752 -5.13846 1.49538 1.51003 1.51592 1.55186 1.59523 2.08039 2.34865 2.51743 3.34424 3.39208 3.47005 3.67451 4.03315 4.10498 4.29484 4.33101 4.35611 4.48593 4.48863 4.51774 4.65289 4.68513 4.71626 4.85750 4.92857 4.97474 5.10959 5.19290 5.21152 5.26180 5.41063 5.47891 5.53781 5.59951 5.71906 5.92407 5.93175 6.28256 6.55721 7.01227 7.08138 7.16115 7.50511 7.74693 8.60070 9.32836 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.003709 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.817459 B = 7547.734355 C = 8697.725195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.738 5.738 3 C 0.699 3.301 4 O -0.635 6.635 5 N -0.727 5.727 6 C 0.125 3.875 7 C 0.513 3.487 8 O -0.573 6.573 9 N -0.699 5.699 10 C 0.141 3.859 11 H 0.093 0.907 12 C -0.133 4.133 13 C 0.140 3.860 14 H 0.112 0.888 15 C -0.133 4.133 16 C -0.119 4.119 17 C 0.126 3.874 18 H 0.104 0.896 19 N -0.610 5.610 20 C -0.211 4.211 21 H 0.086 0.914 22 C -0.067 4.067 23 N -0.948 5.948 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.299 1.299 27 H -0.301 1.301 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.415 0.585 32 H 0.413 0.587 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.409 0.591 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 -13.676 -8.029 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.394 5.394 3 C 0.398 3.602 4 O -0.517 6.517 5 N -0.386 5.386 6 C -0.003 4.003 7 C 0.299 3.701 8 O -0.454 6.454 9 N -0.348 5.348 10 C 0.034 3.966 11 H 0.111 0.889 12 C -0.174 4.174 13 C 0.034 3.966 14 H 0.129 0.871 15 C -0.172 4.172 16 C -0.159 4.159 17 C 0.019 3.981 18 H 0.122 0.878 19 N -0.331 5.331 20 C -0.340 4.340 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.598 5.598 24 Si 0.801 3.199 25 H -0.190 1.190 26 H -0.227 1.227 27 H -0.228 1.228 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.250 0.750 32 H 0.252 0.748 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.245 0.755 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.444 -13.247 -7.897 18.626 hybrid contribution 0.345 0.933 0.718 1.227 sum -10.099 -12.313 -7.179 17.469 Atomic orbital electron populations 1.21571 0.76921 1.04215 1.01347 1.44845 1.08462 1.06673 1.79377 1.16085 0.81520 0.84819 0.77770 1.90913 1.68728 1.32052 1.59959 1.44644 1.04387 1.09804 1.79749 1.20827 0.87168 0.87012 1.05335 1.20627 0.88776 0.85107 0.75547 1.90633 1.80442 1.22061 1.52231 1.45887 1.06591 1.09596 1.72677 1.22485 0.78788 0.98898 0.96425 0.88895 1.23321 0.99220 0.98832 0.96005 1.23527 0.90385 0.86135 0.96574 0.87065 1.22969 0.98183 0.99564 0.96496 1.22840 0.96031 1.00774 0.96256 1.23385 0.94877 0.89198 0.90680 0.87763 1.46705 1.69705 1.06708 1.09992 1.19390 1.31715 0.85624 0.97273 0.89593 1.25390 1.02716 1.01449 0.96411 1.69748 1.50179 1.35846 1.03988 0.85102 0.76548 0.80687 0.77549 1.19022 1.22712 1.22847 0.93488 0.93223 0.86734 0.74956 0.74841 0.87426 0.88623 0.75543 0.94610 0.91346 0.91026 0.94552 0.89832 0.92339 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.35 10.70 127.77 1.37 2.72 16 2 N -0.74 -12.03 5.72 -500.17 -2.86 -14.89 16 3 C 0.70 17.47 8.57 179.06 1.53 19.01 16 4 O -0.63 -21.26 16.34 -4.01 -0.07 -21.32 16 5 N -0.73 -16.76 5.53 -482.30 -2.67 -19.43 16 6 C 0.12 3.07 6.15 85.63 0.53 3.60 16 7 C 0.51 14.67 7.90 87.66 0.69 15.36 16 8 O -0.57 -18.78 15.31 -3.04 -0.05 -18.82 16 9 N -0.70 -21.09 5.07 -434.91 -2.21 -23.30 16 10 C 0.14 4.65 2.80 46.61 0.13 4.78 16 11 H 0.09 2.94 7.23 -2.39 -0.02 2.92 16 12 C -0.13 -5.12 6.23 32.21 0.20 -4.92 16 13 C 0.14 6.22 4.69 46.23 0.22 6.43 16 14 H 0.11 5.92 5.57 -2.39 -0.01 5.90 16 15 C -0.13 -4.93 6.44 32.21 0.21 -4.72 16 16 C -0.12 -3.83 6.44 32.21 0.21 -3.62 16 17 C 0.13 4.39 5.06 46.23 0.23 4.63 16 18 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 19 N -0.61 -27.60 2.99 -615.22 -1.84 -29.43 16 20 C -0.21 -10.72 10.59 84.03 0.89 -9.83 16 21 H 0.09 4.15 7.83 -2.91 -0.02 4.12 16 22 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 23 N -0.95 -54.08 10.48 21.65 0.23 -53.86 16 24 Si 0.97 44.24 29.55 68.60 2.03 46.27 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.41 4.13 8.84 -92.71 -0.82 3.31 16 32 H 0.41 8.57 7.45 -92.71 -0.69 7.88 16 33 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.41 12.14 8.66 -92.71 -0.80 11.34 16 36 H 0.04 1.52 7.98 -2.39 -0.02 1.50 16 37 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 38 H 0.07 2.29 7.82 -2.39 -0.02 2.27 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.24 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -69.40 343.84 -2.00 -71.40 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -1.25 Total: 33.08 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: 6.67 Total: 30.30 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -9.34 Total: -140.91 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.11 Total: -40.15 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.40 -2.00 -71.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110626823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.982 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds