Wall clock time and date at job start Tue Mar 31 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46421 * 2 1 4 4 C 1.52988 * 109.47204 * 240.00305 * 2 1 3 5 5 C 1.50710 * 109.47183 * 174.99928 * 4 2 1 6 6 O 1.21279 * 119.99535 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00019 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99771 * 179.97438 * 7 5 4 9 9 H 1.08999 * 115.49477 * 9.62441 * 8 7 5 10 10 C 1.57116 * 116.95921 * 222.99996 * 8 7 5 11 11 H 1.09005 * 119.80081 * 3.79534 * 10 8 7 12 12 C 1.54787 * 118.02014 * 161.36470 * 10 8 7 13 13 N 1.48152 * 104.41612 * 86.47861 * 12 10 8 14 14 C 1.36932 * 127.83711 * 140.36690 * 13 12 10 15 15 H 1.08006 * 120.00184 * 338.37942 * 14 13 12 16 16 C 1.38810 * 120.00103 * 158.37419 * 14 13 12 17 17 N 1.31626 * 119.99997 * 335.56934 * 16 14 13 18 18 Si 1.86797 * 120.00334 * 155.56671 * 16 14 13 19 19 H 1.48500 * 109.47402 * 59.99966 * 18 16 14 20 20 H 1.48498 * 109.46879 * 300.00011 * 18 16 14 21 21 H 1.48504 * 109.47354 * 180.02562 * 18 16 14 22 22 C 1.48143 * 104.32261 * 320.10979 * 13 12 10 23 23 C 1.53005 * 117.43876 * 155.00205 * 8 7 5 24 24 H 1.08994 * 119.54192 * 354.28133 * 23 8 7 25 25 N 1.46498 * 109.47221 * 119.99593 * 2 1 3 26 26 C 1.34773 * 120.00283 * 275.00639 * 25 2 1 27 27 N 1.34783 * 120.00031 * 179.97438 * 26 25 2 28 28 O 1.21586 * 120.00322 * 359.97438 * 26 25 2 29 29 H 1.09000 * 109.47677 * 299.99528 * 1 2 3 30 30 H 1.09002 * 109.47056 * 60.00028 * 1 2 3 31 31 H 1.08999 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47724 * 54.99656 * 4 2 1 33 33 H 1.09000 * 109.47296 * 294.99201 * 4 2 1 34 34 H 0.96996 * 120.00226 * 359.97438 * 7 5 4 35 35 H 1.09004 * 110.54614 * 327.74212 * 12 10 8 36 36 H 1.08995 * 110.46653 * 205.18080 * 12 10 8 37 37 H 0.97000 * 119.99542 * 354.36372 * 17 16 14 38 38 H 1.09004 * 110.40887 * 158.63172 * 22 13 12 39 39 H 1.09005 * 110.40529 * 281.05835 * 22 13 12 40 40 H 0.97007 * 119.99567 * 95.00021 * 25 2 1 41 41 H 0.96999 * 119.99452 * 359.97438 * 27 26 25 42 42 H 0.96996 * 120.00149 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 8 4.1450 -0.0202 -0.4444 7 7 4.2150 -1.1803 -2.3342 8 6 5.6751 -1.0764 -2.3962 9 1 6.1550 -0.6728 -1.5046 10 6 6.3074 -0.7543 -3.7979 11 1 5.6595 -0.5586 -4.6524 12 6 7.7560 -0.2100 -3.8344 13 7 8.6060 -1.4234 -3.8368 14 6 9.7557 -1.6421 -4.5477 15 1 9.9590 -1.0640 -5.4371 16 6 10.6599 -2.6069 -4.1254 17 7 10.6957 -2.9662 -2.8596 18 14 11.8260 -3.3955 -5.3533 19 1 12.6803 -2.3479 -5.9680 20 1 11.0411 -4.0787 -6.4127 21 1 12.6831 -4.3873 -4.6555 22 6 7.9334 -2.3438 -2.8908 23 6 6.4267 -2.1596 -3.1725 24 1 5.8789 -3.0139 -3.5700 25 7 2.0184 -0.6905 1.1962 26 6 2.1470 -0.0182 2.3571 27 7 2.5958 -0.6536 3.4578 28 8 1.8582 1.1616 2.4117 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2617 -2.1369 33 1 1.7518 -1.7714 -1.2055 34 1 3.7328 -1.6561 -3.0284 35 1 7.9597 0.3951 -2.9509 36 1 7.9217 0.3720 -4.7410 37 1 10.1489 -2.5004 -2.2077 38 1 8.2332 -3.3738 -3.0845 39 1 8.1644 -2.0670 -1.8621 40 1 2.2491 -1.6317 1.1526 41 1 2.8259 -1.5950 3.4143 42 1 2.6888 -0.1697 4.2932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114277732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:43 Heat of formation + Delta-G solvation = -14.534269 kcal Electronic energy + Delta-G solvation = -23699.375292 eV Core-core repulsion = 20101.999867 eV Total energy + Delta-G solvation = -3597.375425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38008 -39.56275 -38.41888 -35.91913 -34.62680 -33.82383 -32.86837 -31.16883 -30.15872 -28.25840 -27.36824 -25.36989 -22.99440 -21.83273 -20.91970 -20.59618 -20.17521 -19.41392 -18.48142 -17.49713 -17.40973 -17.08967 -16.35186 -15.89184 -15.17647 -14.68799 -14.60580 -14.19067 -14.00975 -13.80469 -13.63182 -13.25316 -13.14793 -12.74138 -12.57019 -12.35877 -12.18831 -11.84075 -11.55227 -11.29540 -10.82201 -10.72464 -10.59073 -10.35277 -10.30140 -10.06378 -9.91628 -9.79398 -9.68724 -9.30574 -9.14629 -8.60633 -8.38924 -7.03611 -6.16981 -3.23354 2.51463 2.77756 2.97589 3.20188 3.47057 3.49985 3.68435 4.07446 4.29586 4.37525 4.49915 4.55139 4.84762 4.91864 5.08190 5.15781 5.20908 5.22204 5.27459 5.38283 5.42019 5.67380 5.74855 5.76449 5.87621 5.93750 6.07909 6.34319 6.37681 6.56809 6.58043 6.63978 6.72373 6.80005 6.91529 6.93608 7.45815 7.70465 7.84351 8.18702 8.40632 8.55907 8.93036 9.73947 10.36779 11.18683 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.002734 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.676831 B =10237.925281 C =10734.479305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.097 0.903 4 C -0.151 4.151 5 C 0.509 3.491 6 O -0.524 6.524 7 N -0.700 5.700 8 C 0.096 3.904 9 H 0.133 0.867 10 C -0.180 4.180 11 H 0.106 0.894 12 C 0.154 3.846 13 N -0.596 5.596 14 C -0.332 4.332 15 H 0.065 0.935 16 C -0.026 4.026 17 N -0.917 5.917 18 Si 1.070 2.930 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.284 1.284 22 C 0.166 3.834 23 C -0.173 4.173 24 H 0.103 0.897 25 N -0.730 5.730 26 C 0.713 3.287 27 N -0.870 5.870 28 O -0.597 6.597 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.398 0.602 35 H 0.027 0.973 36 H 0.054 0.946 37 H 0.269 0.731 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.393 0.607 41 H 0.395 0.605 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.815 -0.329 5.087 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 H 0.115 0.885 4 C -0.192 4.192 5 C 0.294 3.706 6 O -0.399 6.399 7 N -0.348 5.348 8 C -0.010 4.010 9 H 0.151 0.849 10 C -0.202 4.202 11 H 0.124 0.876 12 C 0.028 3.972 13 N -0.321 5.321 14 C -0.459 4.459 15 H 0.083 0.917 16 C -0.228 4.228 17 N -0.557 5.557 18 Si 0.899 3.101 19 H -0.219 1.219 20 H -0.220 1.220 21 H -0.210 1.210 22 C 0.039 3.961 23 C -0.194 4.194 24 H 0.121 0.879 25 N -0.385 5.385 26 C 0.411 3.589 27 N -0.437 5.437 28 O -0.475 6.475 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.232 0.768 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.226 0.774 41 H 0.223 0.777 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -20.332 -0.062 5.316 21.016 hybrid contribution -1.198 0.104 -0.074 1.205 sum -21.531 0.042 5.243 22.160 Atomic orbital electron populations 1.22220 0.94912 1.02121 1.02979 1.20499 0.93098 0.97913 0.81525 0.88451 1.22077 0.92900 1.03643 1.00558 1.20576 0.89721 0.78751 0.81508 1.90777 1.70003 1.41091 1.38075 1.45402 1.06780 1.56158 1.26507 1.22496 0.78839 1.03295 0.96373 0.84932 1.25118 0.99166 1.00653 0.95259 0.87565 1.21198 0.86783 0.90346 0.98906 1.45273 1.25607 1.09890 1.51307 1.19748 0.96522 1.24319 1.05345 0.91688 1.25903 0.98291 0.99301 0.99258 1.70772 1.39587 1.44754 1.00621 0.83448 0.75622 0.76466 0.74522 1.21880 1.22040 1.20974 1.21121 0.85703 0.96195 0.93059 1.24404 0.98865 0.92644 1.03522 0.87892 1.44935 1.71452 1.13223 1.08895 1.15851 0.77652 0.84807 0.80583 1.42964 1.73731 1.14814 1.12212 1.90945 1.57561 1.14295 1.84706 0.91574 0.91429 0.92471 0.87170 0.88345 0.76782 0.95563 0.92758 0.92035 0.91366 0.95464 0.77414 0.77730 0.75554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.18 1.64 2.13 -67.94 -0.15 1.49 16 3 H 0.10 1.26 7.39 -51.93 -0.38 0.87 16 4 C -0.15 -1.07 5.24 -27.88 -0.15 -1.22 16 5 C 0.51 6.05 7.69 -10.98 -0.08 5.96 16 6 O -0.52 -8.73 14.92 5.56 0.08 -8.65 16 7 N -0.70 -8.12 5.57 -51.64 -0.29 -8.41 16 8 C 0.10 1.52 6.19 -65.69 -0.41 1.12 16 9 H 0.13 2.45 7.40 -51.93 -0.38 2.07 16 10 C -0.18 -3.12 7.25 -86.77 -0.63 -3.75 16 11 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 12 C 0.15 3.29 7.08 -2.19 -0.02 3.27 16 13 N -0.60 -15.24 3.22 -168.61 -0.54 -15.78 16 14 C -0.33 -9.39 10.19 -15.06 -0.15 -9.55 16 15 H 0.07 1.82 7.94 -52.48 -0.42 1.41 16 16 C -0.03 -0.73 5.12 -17.43 -0.09 -0.82 16 17 N -0.92 -27.72 12.82 55.49 0.71 -27.01 16 18 Si 1.07 25.15 29.98 -169.99 -5.10 20.06 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.17 3.82 4.99 -2.41 -0.01 3.80 16 23 C -0.17 -3.06 6.91 -89.22 -0.62 -3.68 16 24 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 25 N -0.73 -7.04 4.22 -58.68 -0.25 -7.29 16 26 C 0.71 8.75 8.80 -86.92 -0.77 7.99 16 27 N -0.87 -7.13 8.88 27.63 0.25 -6.89 16 28 O -0.60 -10.02 16.84 5.29 0.09 -9.93 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.40 3.39 8.83 -40.82 -0.36 3.03 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.27 8.17 6.42 -40.82 -0.26 7.91 16 38 H 0.07 1.72 7.47 -51.93 -0.39 1.33 16 39 H 0.03 0.66 7.66 -51.93 -0.40 0.26 16 40 H 0.39 2.84 8.62 -40.82 -0.35 2.49 16 41 H 0.40 2.09 8.84 -40.82 -0.36 1.73 16 42 H 0.41 3.02 8.93 -40.82 -0.36 2.65 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -37.60 351.63 -8.73 -46.33 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.27 Total: 8.48 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.71 Total: 3.79 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.12 Total: -65.37 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.10 Total: 20.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.60 -8.73 -46.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114277732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.795 kcal (2) G-P(sol) polarization free energy of solvation -37.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds