Wall clock time and date at job start Tue Mar 31 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46421 * 2 1 4 4 C 1.52988 * 109.47204 * 240.00305 * 2 1 3 5 5 C 1.50710 * 109.47183 * 174.99928 * 4 2 1 6 6 O 1.21279 * 119.99535 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00019 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99771 * 179.97438 * 7 5 4 9 9 H 1.08999 * 115.49477 * 9.62441 * 8 7 5 10 10 C 1.57116 * 116.95921 * 222.99996 * 8 7 5 11 11 H 1.09005 * 119.80081 * 3.79534 * 10 8 7 12 12 C 1.54787 * 118.02014 * 161.36470 * 10 8 7 13 13 N 1.48152 * 104.41612 * 86.47861 * 12 10 8 14 14 C 1.36932 * 127.83711 * 140.36690 * 13 12 10 15 15 H 1.08006 * 120.00184 * 338.37942 * 14 13 12 16 16 C 1.38810 * 120.00103 * 158.37419 * 14 13 12 17 17 N 1.31626 * 119.99997 * 335.56934 * 16 14 13 18 18 Si 1.86797 * 120.00334 * 155.56671 * 16 14 13 19 19 H 1.48500 * 109.47402 * 59.99966 * 18 16 14 20 20 H 1.48498 * 109.46879 * 300.00011 * 18 16 14 21 21 H 1.48504 * 109.47354 * 180.02562 * 18 16 14 22 22 C 1.48143 * 104.32261 * 320.10979 * 13 12 10 23 23 C 1.53005 * 117.43876 * 155.00205 * 8 7 5 24 24 H 1.08994 * 119.54192 * 354.28133 * 23 8 7 25 25 N 1.46498 * 109.47221 * 119.99593 * 2 1 3 26 26 C 1.34773 * 120.00283 * 275.00639 * 25 2 1 27 27 N 1.34783 * 120.00031 * 179.97438 * 26 25 2 28 28 O 1.21586 * 120.00322 * 359.97438 * 26 25 2 29 29 H 1.09000 * 109.47677 * 299.99528 * 1 2 3 30 30 H 1.09002 * 109.47056 * 60.00028 * 1 2 3 31 31 H 1.08999 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47724 * 54.99656 * 4 2 1 33 33 H 1.09000 * 109.47296 * 294.99201 * 4 2 1 34 34 H 0.96996 * 120.00226 * 359.97438 * 7 5 4 35 35 H 1.09004 * 110.54614 * 327.74212 * 12 10 8 36 36 H 1.08995 * 110.46653 * 205.18080 * 12 10 8 37 37 H 0.97000 * 119.99542 * 354.36372 * 17 16 14 38 38 H 1.09004 * 110.40887 * 158.63172 * 22 13 12 39 39 H 1.09005 * 110.40529 * 281.05835 * 22 13 12 40 40 H 0.97007 * 119.99567 * 95.00021 * 25 2 1 41 41 H 0.96999 * 119.99452 * 359.97438 * 27 26 25 42 42 H 0.96996 * 120.00149 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 8 4.1450 -0.0202 -0.4444 7 7 4.2150 -1.1803 -2.3342 8 6 5.6751 -1.0764 -2.3962 9 1 6.1550 -0.6728 -1.5046 10 6 6.3074 -0.7543 -3.7979 11 1 5.6595 -0.5586 -4.6524 12 6 7.7560 -0.2100 -3.8344 13 7 8.6060 -1.4234 -3.8368 14 6 9.7557 -1.6421 -4.5477 15 1 9.9590 -1.0640 -5.4371 16 6 10.6599 -2.6069 -4.1254 17 7 10.6957 -2.9662 -2.8596 18 14 11.8260 -3.3955 -5.3533 19 1 12.6803 -2.3479 -5.9680 20 1 11.0411 -4.0787 -6.4127 21 1 12.6831 -4.3873 -4.6555 22 6 7.9334 -2.3438 -2.8908 23 6 6.4267 -2.1596 -3.1725 24 1 5.8789 -3.0139 -3.5700 25 7 2.0184 -0.6905 1.1962 26 6 2.1470 -0.0182 2.3571 27 7 2.5958 -0.6536 3.4578 28 8 1.8582 1.1616 2.4117 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2617 -2.1369 33 1 1.7518 -1.7714 -1.2055 34 1 3.7328 -1.6561 -3.0284 35 1 7.9597 0.3951 -2.9509 36 1 7.9217 0.3720 -4.7410 37 1 10.1489 -2.5004 -2.2077 38 1 8.2332 -3.3738 -3.0845 39 1 8.1644 -2.0670 -1.8621 40 1 2.2491 -1.6317 1.1526 41 1 2.8259 -1.5950 3.4143 42 1 2.6888 -0.1697 4.2932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114277732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:42 Heat of formation + Delta-G solvation = -46.142976 kcal Electronic energy + Delta-G solvation = -23700.745949 eV Core-core repulsion = 20101.999867 eV Total energy + Delta-G solvation = -3598.746082 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35364 -40.69839 -39.79963 -36.81336 -36.15981 -34.71978 -34.45030 -32.27819 -31.58028 -29.19558 -28.95875 -27.26112 -24.11441 -23.13862 -22.02696 -21.85607 -21.29128 -20.94994 -19.54216 -19.31536 -18.29070 -18.00766 -17.58499 -16.64742 -16.19369 -16.10417 -15.82918 -15.54601 -15.39665 -15.35200 -15.08911 -14.88523 -13.95416 -13.92254 -13.59185 -13.52139 -13.25949 -13.01160 -12.78283 -12.59149 -12.55640 -12.30285 -11.95337 -11.91738 -11.80087 -11.65446 -11.40255 -11.03055 -10.82467 -10.68321 -10.63524 -9.91464 -9.68438 -9.13020 -8.40975 -5.44194 1.56429 1.57354 1.65216 1.84622 1.94625 2.02403 2.28961 2.60945 2.70717 3.15122 3.42287 3.63680 3.64749 3.69661 3.74900 3.83175 3.99953 4.25434 4.26410 4.29235 4.44159 4.66124 4.68080 4.72842 4.77605 4.83694 4.89759 4.96485 5.09701 5.15636 5.22058 5.36890 5.48667 5.59896 5.63934 5.91320 6.06413 6.22540 6.56259 6.76853 7.13551 7.28908 7.60583 7.71563 8.27732 8.94337 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.002734 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.676831 B =10237.925281 C =10734.479305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.170 3.830 3 H 0.053 0.947 4 C -0.133 4.133 5 C 0.506 3.494 6 O -0.578 6.578 7 N -0.682 5.682 8 C 0.121 3.879 9 H 0.102 0.898 10 C -0.169 4.169 11 H 0.141 0.859 12 C 0.145 3.855 13 N -0.622 5.622 14 C -0.342 4.342 15 H 0.064 0.936 16 C -0.080 4.080 17 N -0.946 5.946 18 Si 1.124 2.876 19 H -0.274 1.274 20 H -0.275 1.275 21 H -0.291 1.291 22 C 0.168 3.832 23 C -0.166 4.166 24 H 0.134 0.866 25 N -0.721 5.721 26 C 0.700 3.300 27 N -0.854 5.854 28 O -0.650 6.650 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.421 0.579 35 H 0.012 0.988 36 H 0.059 0.941 37 H 0.252 0.748 38 H 0.039 0.961 39 H 0.003 0.997 40 H 0.406 0.594 41 H 0.411 0.589 42 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.414 -1.759 3.058 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.064 3.936 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.295 3.705 6 O -0.456 6.456 7 N -0.333 5.333 8 C 0.012 3.988 9 H 0.120 0.880 10 C -0.190 4.190 11 H 0.159 0.841 12 C 0.020 3.980 13 N -0.347 5.347 14 C -0.471 4.471 15 H 0.081 0.919 16 C -0.275 4.275 17 N -0.588 5.588 18 Si 0.947 3.053 19 H -0.200 1.200 20 H -0.201 1.201 21 H -0.217 1.217 22 C 0.042 3.958 23 C -0.187 4.187 24 H 0.152 0.848 25 N -0.377 5.377 26 C 0.398 3.602 27 N -0.423 5.423 28 O -0.533 6.533 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.259 0.741 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.242 0.758 41 H 0.241 0.759 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -22.988 -1.538 3.259 23.269 hybrid contribution -0.383 0.630 0.639 0.976 sum -23.371 -0.908 3.898 23.712 Atomic orbital electron populations 1.22126 0.92870 1.03578 1.02613 1.20567 0.94591 0.96098 0.82381 0.92837 1.22104 0.88496 1.06206 1.00500 1.21500 0.91638 0.77143 0.80223 1.90783 1.71466 1.43296 1.40090 1.45197 1.04501 1.56263 1.27333 1.21953 0.81372 1.00990 0.94437 0.88023 1.24998 0.97285 0.99387 0.97334 0.84113 1.21320 0.89019 0.89267 0.98412 1.45578 1.25732 1.12055 1.51340 1.20065 0.97615 1.24099 1.05281 0.91864 1.27422 1.00056 1.00061 0.99982 1.70900 1.40765 1.45736 1.01434 0.82752 0.73999 0.75888 0.72671 1.19952 1.20100 1.21692 1.20949 0.89491 0.94034 0.91345 1.24139 0.95697 0.94137 1.04702 0.84835 1.44901 1.70715 1.13748 1.08300 1.16216 0.77704 0.84437 0.81848 1.42815 1.72455 1.15569 1.11429 1.90901 1.59955 1.16756 1.85673 0.94327 0.89485 0.89967 0.83695 0.84160 0.74137 0.97065 0.92289 0.93810 0.94268 0.97960 0.75805 0.75853 0.75078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.48 71.98 0.68 -1.12 16 2 C 0.17 2.85 2.13 44.99 0.10 2.95 16 3 H 0.05 1.40 7.39 -2.39 -0.02 1.38 16 4 C -0.13 -1.31 5.24 29.85 0.16 -1.15 16 5 C 0.51 10.66 7.69 87.66 0.67 11.33 16 6 O -0.58 -19.02 14.92 -3.03 -0.05 -19.06 16 7 N -0.68 -13.34 5.57 -435.69 -2.43 -15.77 16 8 C 0.12 3.62 6.19 46.44 0.29 3.91 16 9 H 0.10 3.82 7.40 -2.39 -0.02 3.80 16 10 C -0.17 -5.48 7.25 -8.30 -0.06 -5.54 16 11 H 0.14 3.68 8.14 -2.38 -0.02 3.66 16 12 C 0.15 6.23 7.08 86.67 0.61 6.84 16 13 N -0.62 -32.47 3.22 -687.35 -2.21 -34.69 16 14 C -0.34 -19.72 10.19 84.03 0.86 -18.86 16 15 H 0.06 3.58 7.94 -2.91 -0.02 3.55 16 16 C -0.08 -4.63 5.12 84.86 0.43 -4.20 16 17 N -0.95 -59.19 12.82 21.65 0.28 -58.91 16 18 Si 1.12 50.93 29.98 68.60 2.06 52.98 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 C 0.17 7.98 4.99 86.53 0.43 8.41 16 23 C -0.17 -5.60 6.91 -9.89 -0.07 -5.67 16 24 H 0.13 3.75 8.14 -2.39 -0.02 3.73 16 25 N -0.72 -13.00 4.22 -457.83 -1.93 -14.93 16 26 C 0.70 17.30 8.80 179.05 1.58 18.87 16 27 N -0.85 -13.66 8.88 -184.74 -1.64 -15.30 16 28 O -0.65 -22.79 16.84 -3.99 -0.07 -22.86 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.42 4.82 8.83 -92.71 -0.82 4.00 16 35 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.25 16.16 6.42 -92.71 -0.59 15.57 16 38 H 0.04 2.05 7.47 -2.39 -0.02 2.03 16 39 H 0.00 0.13 7.66 -2.38 -0.02 0.12 16 40 H 0.41 4.90 8.62 -92.70 -0.80 4.10 16 41 H 0.41 3.84 8.84 -92.71 -0.82 3.02 16 42 H 0.42 6.06 8.93 -92.71 -0.83 5.23 16 Total: -1.00 -88.96 351.63 -2.32 -91.28 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -2.01 Total: 21.49 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 5.68 Total: 15.77 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -7.94 Total: -139.60 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.11 Total: -41.92 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.06 Total: 52.98 kcal Total: -88.96 -2.32 -91.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114277732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.132 kcal (2) G-P(sol) polarization free energy of solvation -88.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds