Wall clock time and date at job start Tue Mar 31 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47218 * 2 1 4 4 C 1.52996 * 109.47265 * 120.00192 * 2 1 3 5 5 C 1.53000 * 109.47298 * 184.99782 * 4 2 1 6 6 H 1.08994 * 109.47159 * 305.00481 * 5 4 2 7 7 C 1.53004 * 109.47325 * 184.99866 * 5 4 2 8 8 N 1.46500 * 109.46792 * 65.00039 * 5 4 2 9 9 C 1.34783 * 120.00135 * 204.99708 * 8 5 4 10 10 O 1.21738 * 119.99642 * 354.47243 * 9 8 5 11 11 C 1.46378 * 120.00097 * 174.46489 * 9 8 5 12 12 C 1.36719 * 126.82467 * 5.08293 * 11 9 8 13 13 N 1.33224 * 107.96054 * 179.86851 * 12 11 9 14 14 C 1.31535 * 109.76467 * 0.40672 * 13 12 11 15 15 O 1.35200 * 125.49976 * 179.76378 * 14 13 12 16 16 N 1.34948 * 109.01174 * 359.74936 * 14 13 12 17 17 C 1.46501 * 126.54596 * 179.97438 * 16 14 13 18 18 N 1.46508 * 109.46935 * 240.00188 * 2 1 3 19 19 C 1.36929 * 120.00004 * 85.00233 * 18 2 1 20 20 H 1.08007 * 120.00218 * 359.97438 * 19 18 2 21 21 C 1.38810 * 120.00055 * 179.72381 * 19 18 2 22 22 N 1.31626 * 120.00138 * 180.27470 * 21 19 18 23 23 Si 1.86801 * 119.99899 * 0.27140 * 21 19 18 24 24 H 1.48498 * 109.46818 * 90.00237 * 23 21 19 25 25 H 1.48504 * 109.47135 * 210.00206 * 23 21 19 26 26 H 1.48492 * 109.47022 * 330.00152 * 23 21 19 27 27 H 1.08996 * 109.47717 * 60.00093 * 1 2 3 28 28 H 1.09001 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47107 * 299.99508 * 1 2 3 30 30 H 1.08998 * 109.47329 * 305.00026 * 4 2 1 31 31 H 1.09005 * 109.47389 * 64.99832 * 4 2 1 32 32 H 1.08998 * 109.46981 * 180.02562 * 7 5 4 33 33 H 1.08997 * 109.47052 * 300.00201 * 7 5 4 34 34 H 1.08996 * 109.47096 * 60.00266 * 7 5 4 35 35 H 0.96999 * 120.00698 * 24.99915 * 8 5 4 36 36 H 1.07997 * 126.02106 * 359.97438 * 12 11 9 37 37 H 0.96694 * 114.00709 * 269.98330 * 15 14 13 38 38 H 1.08998 * 109.47185 * 269.58037 * 17 16 14 39 39 H 1.09000 * 109.46660 * 29.57970 * 17 16 14 40 40 H 1.09001 * 109.47532 * 149.57305 * 17 16 14 41 41 H 0.97001 * 119.99436 * 264.99134 * 18 2 1 42 42 H 0.97000 * 119.99762 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9953 -0.9922 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9479 0.7893 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9759 0.4135 0.6647 11 6 5.4991 2.6362 1.1534 12 6 4.7349 3.6358 1.6882 13 7 5.4024 4.7807 1.5524 14 6 6.5500 4.5577 0.9495 15 8 7.4740 5.4974 0.6477 16 7 6.6566 3.2395 0.6809 17 6 7.7793 2.5725 0.0168 18 7 2.0183 -0.6906 -1.1963 19 6 2.1491 -0.0075 -2.3758 20 1 1.8919 1.0404 -2.4243 21 6 2.6172 -0.6604 -3.5077 22 7 2.7480 -0.0024 -4.6402 23 14 3.0615 -2.4728 -3.4239 24 1 1.8659 -3.2911 -3.7499 25 1 4.1415 -2.7634 -4.4008 26 1 3.5302 -2.8047 -2.0546 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 1.7516 -1.7716 1.2055 32 1 5.1714 -1.3611 2.5385 33 1 3.6546 -1.0594 3.4192 34 1 3.8002 -2.4820 2.3594 35 1 3.3285 1.4128 1.9028 36 1 3.7621 3.5178 2.1423 37 1 7.3562 5.8993 -0.2238 38 1 7.6038 2.5498 -1.0587 39 1 8.6998 3.1185 0.2233 40 1 7.8697 1.5531 0.3919 41 1 2.2490 -1.6318 -1.1526 42 1 3.0755 -0.4586 -5.4311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135189230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:54 Heat of formation + Delta-G solvation = -1.229738 kcal Electronic energy + Delta-G solvation = -24737.578982 eV Core-core repulsion = 21140.780485 eV Total energy + Delta-G solvation = -3596.798497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28779 -39.45662 -37.52522 -36.93328 -34.78466 -34.03056 -32.25649 -31.26352 -29.32658 -28.78688 -27.14477 -26.43547 -23.65676 -23.22804 -21.86406 -20.96709 -20.24013 -19.85570 -18.73085 -17.77934 -17.32883 -16.59622 -16.14892 -15.62120 -14.96375 -14.65022 -14.43712 -14.36932 -14.00972 -13.69058 -13.58426 -13.09900 -12.80193 -12.76017 -12.66058 -12.42287 -12.31690 -12.13277 -11.99089 -11.73348 -11.27128 -10.95293 -10.68949 -10.52542 -10.35407 -10.28928 -9.97899 -9.88689 -9.74399 -9.57214 -8.94090 -8.91800 -8.50452 -7.25224 -5.75251 -3.10079 1.17443 2.09424 2.59081 3.30217 3.39000 3.41186 3.46735 3.48657 3.69237 4.60857 4.61162 4.68969 4.92973 5.00438 5.16116 5.21018 5.23136 5.28908 5.49715 5.50677 5.55849 5.73952 5.78599 5.85395 5.90021 5.98702 6.17177 6.22656 6.26821 6.29598 6.37506 6.42059 6.49165 6.67087 6.80180 6.98122 7.35058 7.58469 7.71457 8.00471 8.32892 8.43597 9.22411 9.95233 10.14400 11.43307 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.005041 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.349892 B = 5552.951577 C = 6248.221120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.056 0.944 4 C -0.135 4.135 5 C 0.147 3.853 6 H 0.100 0.900 7 C -0.163 4.163 8 N -0.701 5.701 9 C 0.599 3.401 10 O -0.541 6.541 11 C -0.067 4.067 12 C 0.050 3.950 13 N -0.488 5.488 14 C 0.390 3.610 15 O -0.442 6.442 16 N -0.425 5.425 17 C 0.063 3.937 18 N -0.746 5.746 19 C -0.237 4.237 20 H 0.088 0.912 21 C 0.004 3.996 22 N -0.936 5.936 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.276 1.276 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.398 0.602 36 H 0.185 0.815 37 H 0.405 0.595 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.360 0.640 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 4.512 15.103 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.174 4.174 5 C 0.044 3.956 6 H 0.118 0.882 7 C -0.221 4.221 8 N -0.352 5.352 9 C 0.385 3.615 10 O -0.419 6.419 11 C -0.184 4.184 12 C -0.104 4.104 13 N -0.216 5.216 14 C 0.091 3.909 15 O -0.243 6.243 16 N -0.118 5.118 17 C -0.078 4.078 18 N -0.389 5.389 19 C -0.367 4.367 20 H 0.106 0.894 21 C -0.191 4.191 22 N -0.584 5.584 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.203 1.203 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.202 0.798 37 H 0.262 0.738 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.192 0.808 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.900 4.749 15.277 17.051 hybrid contribution 0.249 -1.532 -0.850 1.769 sum 6.149 3.217 14.427 16.009 Atomic orbital electron populations 1.22414 0.98876 1.00845 1.00416 1.20220 0.91859 0.95885 0.85443 0.92644 1.22238 0.93528 1.02320 0.99311 1.21051 0.95204 0.79599 0.99779 0.88161 1.22200 1.01806 1.00010 0.98077 1.45563 1.15627 1.11830 1.62193 1.16525 0.82631 0.84849 0.77524 1.90803 1.48492 1.55671 1.46907 1.20671 0.89983 0.95367 1.12385 1.22487 0.99704 0.86649 1.01606 1.70260 1.02990 1.28172 1.20203 1.20180 0.90146 0.79434 1.01139 1.84771 1.47501 1.50919 1.41115 1.45618 1.15915 1.07725 1.42495 1.22326 0.86448 1.00407 0.98666 1.42785 1.79608 1.09345 1.07166 1.19013 1.36530 0.95480 0.85628 0.89440 1.24644 1.01457 0.97376 0.95646 1.69703 1.52776 1.35483 1.00409 0.86578 0.78002 0.87031 0.77100 1.21220 1.21908 1.20263 0.92409 0.93643 0.94254 0.91278 0.90531 0.92265 0.92738 0.91753 0.76703 0.79825 0.73751 0.89721 0.89411 0.87371 0.80768 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.49 37.16 0.35 -2.31 16 2 C 0.18 3.04 2.84 -67.93 -0.19 2.85 16 3 H 0.06 1.00 7.56 -51.93 -0.39 0.61 16 4 C -0.14 -1.80 4.29 -26.73 -0.11 -1.91 16 5 C 0.15 2.13 2.48 -67.93 -0.17 1.96 16 6 H 0.10 1.90 7.14 -51.93 -0.37 1.53 16 7 C -0.16 -1.97 9.48 37.16 0.35 -1.62 16 8 N -0.70 -9.47 4.43 -55.20 -0.24 -9.71 16 9 C 0.60 9.59 7.73 -12.98 -0.10 9.49 16 10 O -0.54 -10.33 14.54 5.15 0.07 -10.26 16 11 C -0.07 -0.99 6.92 -81.98 -0.57 -1.55 16 12 C 0.05 0.66 11.36 -17.50 -0.20 0.46 16 13 N -0.49 -7.08 11.22 -14.62 -0.16 -7.25 16 14 C 0.39 5.25 9.01 -89.59 -0.81 4.45 16 15 O -0.44 -4.59 13.52 -17.30 -0.23 -4.82 16 16 N -0.43 -5.89 3.20 -122.12 -0.39 -6.28 16 17 C 0.06 0.74 10.69 59.85 0.64 1.38 16 18 N -0.75 -16.76 4.30 -53.42 -0.23 -16.99 16 19 C -0.24 -6.53 10.41 -15.06 -0.16 -6.68 16 20 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 22 N -0.94 -29.44 13.97 55.49 0.78 -28.67 16 23 Si 0.88 22.29 27.74 -169.99 -4.72 17.58 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.28 -6.57 6.51 56.52 0.37 -6.21 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 4.15 7.53 -40.82 -0.31 3.84 16 36 H 0.18 1.72 7.45 -52.49 -0.39 1.33 16 37 H 0.40 2.21 9.06 45.56 0.41 2.62 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 0.78 8.12 -51.93 -0.42 0.35 16 40 H 0.11 1.41 6.43 -51.93 -0.33 1.08 16 41 H 0.36 8.07 5.66 -40.82 -0.23 7.84 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -36.29 352.36 -6.30 -42.60 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.43 Total: 11.95 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.06 Total: 6.53 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -0.25 Total: -68.89 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.16 Total: -15.08 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.72 Total: 17.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.29 -6.30 -42.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135189230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.368 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds