Wall clock time and date at job start Tue Mar 31 2020 03:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47218 * 2 1 4 4 C 1.52996 * 109.47265 * 120.00192 * 2 1 3 5 5 C 1.53000 * 109.47298 * 184.99782 * 4 2 1 6 6 H 1.08994 * 109.47159 * 305.00481 * 5 4 2 7 7 C 1.53004 * 109.47325 * 184.99866 * 5 4 2 8 8 N 1.46500 * 109.46792 * 65.00039 * 5 4 2 9 9 C 1.34783 * 120.00135 * 204.99708 * 8 5 4 10 10 O 1.21738 * 119.99642 * 354.47243 * 9 8 5 11 11 C 1.46378 * 120.00097 * 174.46489 * 9 8 5 12 12 C 1.36719 * 126.82467 * 5.08293 * 11 9 8 13 13 N 1.33224 * 107.96054 * 179.86851 * 12 11 9 14 14 C 1.31535 * 109.76467 * 0.40672 * 13 12 11 15 15 O 1.35200 * 125.49976 * 179.76378 * 14 13 12 16 16 N 1.34948 * 109.01174 * 359.74936 * 14 13 12 17 17 C 1.46501 * 126.54596 * 179.97438 * 16 14 13 18 18 N 1.46508 * 109.46935 * 240.00188 * 2 1 3 19 19 C 1.36929 * 120.00004 * 85.00233 * 18 2 1 20 20 H 1.08007 * 120.00218 * 359.97438 * 19 18 2 21 21 C 1.38810 * 120.00055 * 179.72381 * 19 18 2 22 22 N 1.31626 * 120.00138 * 180.27470 * 21 19 18 23 23 Si 1.86801 * 119.99899 * 0.27140 * 21 19 18 24 24 H 1.48498 * 109.46818 * 90.00237 * 23 21 19 25 25 H 1.48504 * 109.47135 * 210.00206 * 23 21 19 26 26 H 1.48492 * 109.47022 * 330.00152 * 23 21 19 27 27 H 1.08996 * 109.47717 * 60.00093 * 1 2 3 28 28 H 1.09001 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47107 * 299.99508 * 1 2 3 30 30 H 1.08998 * 109.47329 * 305.00026 * 4 2 1 31 31 H 1.09005 * 109.47389 * 64.99832 * 4 2 1 32 32 H 1.08998 * 109.46981 * 180.02562 * 7 5 4 33 33 H 1.08997 * 109.47052 * 300.00201 * 7 5 4 34 34 H 1.08996 * 109.47096 * 60.00266 * 7 5 4 35 35 H 0.96999 * 120.00698 * 24.99915 * 8 5 4 36 36 H 1.07997 * 126.02106 * 359.97438 * 12 11 9 37 37 H 0.96694 * 114.00709 * 269.98330 * 15 14 13 38 38 H 1.08998 * 109.47185 * 269.58037 * 17 16 14 39 39 H 1.09000 * 109.46660 * 29.57970 * 17 16 14 40 40 H 1.09001 * 109.47532 * 149.57305 * 17 16 14 41 41 H 0.97001 * 119.99436 * 264.99134 * 18 2 1 42 42 H 0.97000 * 119.99762 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9953 -0.9922 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9479 0.7893 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9759 0.4135 0.6647 11 6 5.4991 2.6362 1.1534 12 6 4.7349 3.6358 1.6882 13 7 5.4024 4.7807 1.5524 14 6 6.5500 4.5577 0.9495 15 8 7.4740 5.4974 0.6477 16 7 6.6566 3.2395 0.6809 17 6 7.7793 2.5725 0.0168 18 7 2.0183 -0.6906 -1.1963 19 6 2.1491 -0.0075 -2.3758 20 1 1.8919 1.0404 -2.4243 21 6 2.6172 -0.6604 -3.5077 22 7 2.7480 -0.0024 -4.6402 23 14 3.0615 -2.4728 -3.4239 24 1 1.8659 -3.2911 -3.7499 25 1 4.1415 -2.7634 -4.4008 26 1 3.5302 -2.8047 -2.0546 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 1.7516 -1.7716 1.2055 32 1 5.1714 -1.3611 2.5385 33 1 3.6546 -1.0594 3.4192 34 1 3.8002 -2.4820 2.3594 35 1 3.3285 1.4128 1.9028 36 1 3.7621 3.5178 2.1423 37 1 7.3562 5.8993 -0.2238 38 1 7.6038 2.5498 -1.0587 39 1 8.6998 3.1185 0.2233 40 1 7.8697 1.5531 0.3919 41 1 2.2490 -1.6318 -1.1526 42 1 3.0755 -0.4586 -5.4311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135189230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:53 Heat of formation + Delta-G solvation = -31.968108 kcal Electronic energy + Delta-G solvation = -24738.911898 eV Core-core repulsion = 21140.780485 eV Total energy + Delta-G solvation = -3598.131413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.31677 -40.64637 -38.51647 -38.21489 -36.21962 -35.12521 -34.08204 -32.60050 -31.04464 -29.84904 -28.12128 -27.56803 -25.35880 -24.62144 -22.87973 -22.13140 -21.44938 -21.24484 -19.76357 -19.63022 -18.49275 -17.65957 -17.31904 -16.74366 -16.59517 -16.01228 -15.75195 -15.50728 -15.23952 -15.16149 -14.72262 -14.54184 -14.26041 -13.99250 -13.77342 -13.72393 -13.40363 -13.21229 -13.19874 -12.98357 -12.77597 -12.60820 -12.37122 -11.97409 -11.84638 -11.66497 -11.43615 -11.41279 -10.99323 -10.94734 -10.88759 -10.11093 -9.54163 -9.24878 -8.00151 -5.29898 0.11729 1.10162 1.34965 1.38838 1.44709 1.56645 2.18748 2.37215 2.49017 2.79505 3.32950 3.58913 3.68725 3.77752 3.86723 3.94767 4.11890 4.21776 4.30804 4.38092 4.55144 4.56927 4.69858 4.81468 4.86690 4.92259 4.94359 5.05407 5.13020 5.23931 5.30899 5.37413 5.41278 5.52143 5.59387 5.64995 5.82190 6.24799 6.46508 6.56256 6.68516 7.13009 7.20607 7.92295 8.07868 9.22067 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.005041 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.349892 B = 5552.951577 C = 6248.221120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 H 0.045 0.955 4 C -0.121 4.121 5 C 0.147 3.853 6 H 0.051 0.949 7 C -0.153 4.153 8 N -0.689 5.689 9 C 0.593 3.407 10 O -0.583 6.583 11 C -0.099 4.099 12 C 0.064 3.936 13 N -0.513 5.513 14 C 0.397 3.603 15 O -0.441 6.441 16 N -0.434 5.434 17 C 0.065 3.935 18 N -0.749 5.749 19 C -0.210 4.210 20 H 0.053 0.947 21 C -0.069 4.069 22 N -0.988 5.988 23 Si 0.948 3.052 24 H -0.277 1.277 25 H -0.305 1.305 26 H -0.254 1.254 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.415 0.585 36 H 0.218 0.782 37 H 0.427 0.573 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.362 0.638 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 4.085 18.031 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.063 0.937 4 C -0.160 4.160 5 C 0.043 3.957 6 H 0.069 0.931 7 C -0.211 4.211 8 N -0.341 5.341 9 C 0.380 3.620 10 O -0.464 6.464 11 C -0.215 4.215 12 C -0.091 4.091 13 N -0.242 5.242 14 C 0.097 3.903 15 O -0.245 6.245 16 N -0.127 5.127 17 C -0.076 4.076 18 N -0.393 5.393 19 C -0.341 4.341 20 H 0.071 0.929 21 C -0.260 4.260 22 N -0.640 5.640 23 Si 0.776 3.224 24 H -0.203 1.203 25 H -0.232 1.232 26 H -0.179 1.179 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.253 0.747 36 H 0.235 0.765 37 H 0.289 0.711 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.195 0.805 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.946 4.337 18.275 19.423 hybrid contribution 0.517 -1.219 -1.708 2.161 sum 5.463 3.118 16.567 17.721 Atomic orbital electron populations 1.22285 0.97238 1.01369 1.00828 1.20543 0.92864 0.95535 0.85292 0.93683 1.22167 0.92313 1.02942 0.98540 1.20978 0.95920 0.80096 0.98748 0.93057 1.22105 1.00534 1.00361 0.98102 1.45473 1.15112 1.12053 1.61413 1.16818 0.82904 0.85241 0.77057 1.90776 1.49867 1.56779 1.48982 1.20690 0.91188 0.95076 1.14510 1.23060 1.00380 0.85611 1.00021 1.70311 1.03771 1.28778 1.21353 1.20377 0.90092 0.79740 1.00081 1.84733 1.46673 1.50208 1.42890 1.45791 1.16193 1.08041 1.42637 1.22363 0.87202 0.99911 0.98173 1.42845 1.79766 1.09455 1.07185 1.18963 1.33606 0.94158 0.87399 0.92876 1.25415 1.03013 1.02060 0.95491 1.69886 1.55410 1.37431 1.01292 0.85505 0.77481 0.81641 0.77765 1.20279 1.23215 1.17870 0.95727 0.93042 0.90132 0.86718 0.89311 0.94314 0.89828 0.90638 0.74739 0.76538 0.71139 0.90096 0.86506 0.89115 0.80515 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 9.49 71.98 0.68 -3.93 16 2 C 0.16 5.36 2.84 44.99 0.13 5.49 16 3 H 0.05 1.56 7.56 -2.39 -0.02 1.55 16 4 C -0.12 -2.75 4.29 30.59 0.13 -2.61 16 5 C 0.15 3.94 2.48 44.99 0.11 4.06 16 6 H 0.05 1.92 7.14 -2.39 -0.02 1.91 16 7 C -0.15 -3.28 9.48 71.98 0.68 -2.60 16 8 N -0.69 -17.53 4.43 -446.76 -1.98 -19.51 16 9 C 0.59 19.02 7.73 86.36 0.67 19.69 16 10 O -0.58 -23.03 14.54 -4.47 -0.06 -23.10 16 11 C -0.10 -2.86 6.92 39.80 0.28 -2.58 16 12 C 0.06 1.57 11.36 84.13 0.96 2.53 16 13 N -0.51 -14.17 11.22 -313.66 -3.52 -17.69 16 14 C 0.40 10.24 9.01 179.99 1.62 11.87 16 15 O -0.44 -8.42 13.52 -84.81 -1.15 -9.57 16 16 N -0.43 -11.92 3.20 -652.00 -2.09 -14.01 16 17 C 0.06 1.53 10.69 127.77 1.37 2.89 16 18 N -0.75 -33.12 4.30 -322.94 -1.39 -34.50 16 19 C -0.21 -11.82 10.41 84.03 0.87 -10.94 16 20 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 22 N -0.99 -64.59 13.97 21.65 0.30 -64.29 16 23 Si 0.95 46.79 27.74 68.60 1.90 48.69 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 26 H -0.25 -11.42 6.51 99.48 0.65 -10.77 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.04 1.00 8.07 -2.39 -0.02 0.98 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.42 7.46 7.53 -92.71 -0.70 6.76 16 36 H 0.22 3.44 7.45 -2.91 -0.02 3.42 16 37 H 0.43 3.90 9.06 -74.06 -0.67 3.23 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.12 1.97 8.12 -2.39 -0.02 1.95 16 40 H 0.09 2.49 6.43 -2.39 -0.02 2.47 16 41 H 0.36 15.68 5.66 -92.71 -0.52 15.16 16 42 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -83.02 352.36 -0.91 -83.93 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.89 Total: 29.86 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 7.96 Total: 20.19 kcal Atomic # 7 Polarization: -141.33 SS G_CDS: -8.67 Total: -150.00 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.21 Total: -32.67 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.90 Total: 48.69 kcal Total: -83.02 -0.91 -83.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135189230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.960 kcal (2) G-P(sol) polarization free energy of solvation -83.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds