Wall clock time and date at job start Tue Mar 31 2020 03:05:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09000 * 109.47251 * 2 1
4 4 C 1.53000 * 109.47250 * 239.99478 * 2 1 3
5 5 C 1.52997 * 109.46976 * 175.00416 * 4 2 1
6 6 H 1.08996 * 109.47137 * 304.99412 * 5 4 2
7 7 C 1.53004 * 109.46846 * 185.00258 * 5 4 2
8 8 N 1.46496 * 109.47544 * 65.00267 * 5 4 2
9 9 C 1.34783 * 120.00090 * 205.00294 * 8 5 4
10 10 O 1.21634 * 119.99849 * 359.97438 * 9 8 5
11 11 C 1.47246 * 120.00131 * 179.97438 * 9 8 5
12 12 C 1.36244 * 126.16671 * 179.97438 * 11 9 8
13 13 N 1.36340 * 106.89228 * 180.02562 * 12 11 9
14 14 C 1.46498 * 126.20251 * 180.02562 * 13 12 11
15 15 C 1.36176 * 107.59670 * 359.97438 * 13 12 11
16 16 O 1.35457 * 125.54979 * 180.02562 * 15 13 12
17 17 N 1.30702 * 108.89832 * 0.02562 * 15 13 12
18 18 N 1.46503 * 109.46991 * 119.99550 * 2 1 3
19 19 C 1.36942 * 119.99711 * 274.99945 * 18 2 1
20 20 H 1.07997 * 120.00394 * 359.97438 * 19 18 2
21 21 C 1.38818 * 119.99425 * 180.02562 * 19 18 2
22 22 N 1.31620 * 120.00219 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 119.99471 * 180.02562 * 21 19 18
24 24 H 1.48506 * 109.47345 * 90.00028 * 23 21 19
25 25 H 1.48510 * 109.46747 * 209.99730 * 23 21 19
26 26 H 1.48496 * 109.47502 * 329.99541 * 23 21 19
27 27 H 1.09001 * 109.47382 * 300.00601 * 1 2 3
28 28 H 1.09006 * 109.47243 * 60.00108 * 1 2 3
29 29 H 1.08995 * 109.47569 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47037 * 54.99926 * 4 2 1
31 31 H 1.08998 * 109.46838 * 295.00335 * 4 2 1
32 32 H 1.08999 * 109.47416 * 180.02562 * 7 5 4
33 33 H 1.09001 * 109.46985 * 299.99375 * 7 5 4
34 34 H 1.08995 * 109.47250 * 59.99633 * 7 5 4
35 35 H 0.97002 * 120.00250 * 24.99090 * 8 5 4
36 36 H 1.08001 * 126.55501 * 0.03611 * 12 11 9
37 37 H 1.08999 * 109.46865 * 89.99782 * 14 13 12
38 38 H 1.09006 * 109.46961 * 209.99894 * 14 13 12
39 39 H 1.09002 * 109.46987 * 329.99574 * 14 13 12
40 40 H 0.96705 * 114.00121 * 269.98436 * 16 15 13
41 41 H 0.96998 * 120.00155 * 94.99457 * 18 2 1
42 42 H 0.97000 * 119.99556 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 3.5648 -0.6135 -1.3135
6 1 3.8570 0.4356 -1.2677
7 6 4.0645 -1.2253 -2.6239
8 7 4.1536 -1.3343 -0.1822
9 6 5.3747 -0.9911 0.2736
10 8 5.9880 -0.0832 -0.2547
11 6 5.9663 -1.7153 1.4110
12 6 7.1851 -1.4753 1.9707
13 7 7.3359 -2.3687 2.9896
14 6 8.4968 -2.4824 3.8758
15 6 6.2113 -3.1352 3.0349
16 8 5.9773 -4.1390 3.9138
17 7 5.3945 -2.7447 2.0922
18 7 2.0183 -0.6905 1.1963
19 6 2.1490 -0.0072 2.3758
20 1 1.8926 1.0407 2.4241
21 6 2.6122 -0.6615 3.5091
22 7 2.9252 -1.9385 3.4501
23 14 2.7899 0.2704 5.1183
24 1 1.5223 0.1783 5.8863
25 1 3.8950 -0.3222 5.9140
26 1 3.0939 1.6959 4.8339
27 1 -0.3634 0.5139 0.8899
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.6054 -0.2619 -2.1369
31 1 1.7516 -1.7716 -1.2054
32 1 5.1508 -1.1488 -2.6696
33 1 3.7723 -2.2744 -2.6697
34 1 3.6264 -0.6890 -3.4656
35 1 3.6646 -2.0585 0.2389
36 1 7.8958 -0.7215 1.6658
37 1 8.3539 -1.8416 4.7459
38 1 8.6060 -3.5173 4.2006
39 1 9.3944 -2.1732 3.3403
40 1 6.2789 -5.0061 3.6100
41 1 2.2489 -1.6317 1.1528
42 1 3.2485 -2.3957 4.2422
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135386716.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:58
Heat of formation + Delta-G solvation = 10.576874 kcal
Electronic energy + Delta-G solvation = -25567.905624 eV
Core-core repulsion = 21971.619099 eV
Total energy + Delta-G solvation = -3596.286524 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.57282 -38.86434 -36.91490 -36.43702 -33.93198 -33.74505 -31.96088 -30.39742
-28.52616 -28.28149 -26.87131 -26.16954 -23.39216 -23.04304 -21.02367 -20.47252
-20.00256 -19.24540 -18.06751 -16.96752 -16.84310 -15.86127 -15.54552 -15.22861
-14.62473 -14.11785 -14.08629 -13.87007 -13.63328 -13.53693 -13.14220 -12.78811
-12.74746 -12.51997 -12.18921 -11.95647 -11.71841 -11.57272 -11.51689 -11.43727
-10.83729 -10.71153 -10.55236 -10.21482 -10.09068 -9.71550 -9.56698 -9.43779
-9.23320 -9.14980 -8.70968 -8.20195 -7.86609 -6.65942 -5.46321 -2.74694
2.06661 2.71447 2.95608 3.53267 3.59612 3.60332 3.92306 4.25237
4.42844 4.76434 4.78476 5.08202 5.13926 5.25850 5.37079 5.55741
5.62252 5.69696 5.80088 5.85149 5.94167 6.04798 6.13747 6.17196
6.29400 6.34879 6.40211 6.50139 6.56636 6.70767 6.78905 6.85082
6.96198 7.02331 7.22030 7.39375 7.94748 7.98967 8.26333 8.57727
8.67257 9.13417 9.78219 10.33212 10.68783 11.71461
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.011896 B = 0.007737 C = 0.005394
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2353.192954 B = 3618.200430 C = 5189.247428
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.170 3.830
3 H 0.045 0.955
4 C -0.133 4.133
5 C 0.149 3.851
6 H 0.082 0.918
7 C -0.161 4.161
8 N -0.680 5.680
9 C 0.615 3.385
10 O -0.572 6.572
11 C -0.028 4.028
12 C 0.018 3.982
13 N -0.472 5.472
14 C 0.075 3.925
15 C 0.366 3.634
16 O -0.434 6.434
17 N -0.384 5.384
18 N -0.713 5.713
19 C -0.246 4.246
20 H 0.061 0.939
21 C 0.001 3.999
22 N -0.892 5.892
23 Si 0.886 3.114
24 H -0.294 1.294
25 H -0.298 1.298
26 H -0.287 1.287
27 H 0.051 0.949
28 H 0.033 0.967
29 H 0.044 0.956
30 H 0.071 0.929
31 H 0.063 0.937
32 H 0.056 0.944
33 H 0.052 0.948
34 H 0.059 0.941
35 H 0.413 0.587
36 H 0.184 0.816
37 H 0.074 0.926
38 H 0.083 0.917
39 H 0.084 0.916
40 H 0.389 0.611
41 H 0.380 0.620
42 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.067 -4.750 -5.852 11.791
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.060 3.940
3 H 0.063 0.937
4 C -0.172 4.172
5 C 0.044 3.956
6 H 0.100 0.900
7 C -0.220 4.220
8 N -0.331 5.331
9 C 0.402 3.598
10 O -0.452 6.452
11 C -0.158 4.158
12 C -0.119 4.119
13 N -0.168 5.168
14 C -0.068 4.068
15 C 0.065 3.935
16 O -0.233 6.233
17 N -0.111 5.111
18 N -0.357 5.357
19 C -0.377 4.377
20 H 0.079 0.921
21 C -0.197 4.197
22 N -0.538 5.538
23 Si 0.719 3.281
24 H -0.222 1.222
25 H -0.225 1.225
26 H -0.213 1.213
27 H 0.070 0.930
28 H 0.052 0.948
29 H 0.063 0.937
30 H 0.090 0.910
31 H 0.082 0.918
32 H 0.076 0.924
33 H 0.071 0.929
34 H 0.078 0.922
35 H 0.253 0.747
36 H 0.201 0.799
37 H 0.093 0.907
38 H 0.102 0.898
39 H 0.103 0.897
40 H 0.243 0.757
41 H 0.215 0.785
42 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 8.518 -4.040 -5.744 11.040
hybrid contribution 0.858 -0.127 1.619 1.837
sum 9.377 -4.168 -4.125 11.059
Atomic orbital electron populations
1.22436 0.99661 1.00560 0.99659 1.20243 0.91550 0.95630 0.86608
0.93728 1.22202 0.93976 1.01616 0.99369 1.20809 0.92584 0.97250
0.84967 0.89979 1.22208 1.01693 1.00814 0.97273 1.45764 1.17282
1.37259 1.32805 1.16686 0.81174 0.81448 0.80509 1.90697 1.63035
1.31347 1.60168 1.20371 0.93502 1.00665 1.01278 1.22395 1.00653
0.97595 0.91241 1.45799 1.15797 1.28735 1.26448 1.21947 0.86836
1.03767 0.94211 1.20338 0.84214 0.93602 0.95357 1.84995 1.81747
1.17108 1.39426 1.71098 1.24014 1.11779 1.04215 1.42389 1.77962
1.10210 1.05135 1.18966 1.37941 0.93489 0.87341 0.92125 1.24599
1.02290 0.95951 0.96892 1.69599 1.48778 1.07393 1.27989 0.86526
0.76869 0.79007 0.85738 1.22222 1.22474 1.21344 0.93008 0.94839
0.93709 0.91007 0.91799 0.92445 0.92852 0.92247 0.74743 0.79859
0.90710 0.89826 0.89709 0.75691 0.78458 0.93746
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.99 9.49 37.16 0.35 -2.64 16
2 C 0.17 3.40 2.89 -67.93 -0.20 3.20 16
3 H 0.04 0.95 8.08 -51.93 -0.42 0.54 16
4 C -0.13 -2.16 4.43 -26.73 -0.12 -2.28 16
5 C 0.15 2.59 2.57 -67.93 -0.17 2.42 16
6 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16
7 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16
8 N -0.68 -13.61 3.80 -54.94 -0.21 -13.82 16
9 C 0.62 13.33 7.77 -12.60 -0.10 13.23 16
10 O -0.57 -13.09 16.54 5.25 0.09 -13.00 16
11 C -0.03 -0.58 6.97 -83.06 -0.58 -1.16 16
12 C 0.02 0.31 11.29 -16.27 -0.18 0.12 16
13 N -0.47 -7.32 3.16 -125.77 -0.40 -7.72 16
14 C 0.08 0.75 11.11 59.85 0.66 1.42 16
15 C 0.37 6.73 9.03 -89.16 -0.81 5.93 16
16 O -0.43 -6.91 13.55 -18.06 -0.24 -7.16 16
17 N -0.38 -8.19 10.21 -11.22 -0.11 -8.30 16
18 N -0.71 -17.30 3.84 -53.42 -0.21 -17.51 16
19 C -0.25 -6.85 9.93 -15.05 -0.15 -7.00 16
20 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16
21 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16
22 N -0.89 -25.66 12.23 55.49 0.68 -24.98 16
23 Si 0.89 23.36 29.55 -169.99 -5.02 18.34 16
24 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16
25 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16
26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16
27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16
28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16
30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.41 8.78 6.22 -40.82 -0.25 8.52 16
36 H 0.18 2.69 8.06 -52.49 -0.42 2.27 16
37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.39 3.76 9.06 45.56 0.41 4.17 16
41 H 0.38 9.61 5.70 -40.82 -0.23 9.38 16
42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
LS Contribution 355.07 15.07 5.35 5.35
Total: -1.00 -34.62 355.07 -6.61 -41.23
By element:
Atomic # 1 Polarization: 21.86 SS G_CDS: -5.51 Total: 16.36 kcal
Atomic # 6 Polarization: 12.24 SS G_CDS: -1.03 Total: 11.21 kcal
Atomic # 7 Polarization: -72.08 SS G_CDS: -0.25 Total: -72.33 kcal
Atomic # 8 Polarization: -20.00 SS G_CDS: -0.16 Total: -20.16 kcal
Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -34.62 -6.61 -41.23 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135386716.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.810 kcal
(2) G-P(sol) polarization free energy of solvation -34.618 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.191 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds