Wall clock time and date at job start Tue Mar 31 2020 03:05:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09000 * 109.47251 * 2 1
4 4 C 1.53000 * 109.47250 * 239.99478 * 2 1 3
5 5 C 1.52997 * 109.46976 * 175.00416 * 4 2 1
6 6 H 1.08996 * 109.47137 * 304.99412 * 5 4 2
7 7 C 1.53004 * 109.46846 * 185.00258 * 5 4 2
8 8 N 1.46496 * 109.47544 * 65.00267 * 5 4 2
9 9 C 1.34783 * 120.00090 * 205.00294 * 8 5 4
10 10 O 1.21634 * 119.99849 * 359.97438 * 9 8 5
11 11 C 1.47246 * 120.00131 * 179.97438 * 9 8 5
12 12 C 1.36244 * 126.16671 * 179.97438 * 11 9 8
13 13 N 1.36340 * 106.89228 * 180.02562 * 12 11 9
14 14 C 1.46498 * 126.20251 * 180.02562 * 13 12 11
15 15 C 1.36176 * 107.59670 * 359.97438 * 13 12 11
16 16 O 1.35457 * 125.54979 * 180.02562 * 15 13 12
17 17 N 1.30702 * 108.89832 * 0.02562 * 15 13 12
18 18 N 1.46503 * 109.46991 * 119.99550 * 2 1 3
19 19 C 1.36942 * 119.99711 * 274.99945 * 18 2 1
20 20 H 1.07997 * 120.00394 * 359.97438 * 19 18 2
21 21 C 1.38818 * 119.99425 * 180.02562 * 19 18 2
22 22 N 1.31620 * 120.00219 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 119.99471 * 180.02562 * 21 19 18
24 24 H 1.48506 * 109.47345 * 90.00028 * 23 21 19
25 25 H 1.48510 * 109.46747 * 209.99730 * 23 21 19
26 26 H 1.48496 * 109.47502 * 329.99541 * 23 21 19
27 27 H 1.09001 * 109.47382 * 300.00601 * 1 2 3
28 28 H 1.09006 * 109.47243 * 60.00108 * 1 2 3
29 29 H 1.08995 * 109.47569 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47037 * 54.99926 * 4 2 1
31 31 H 1.08998 * 109.46838 * 295.00335 * 4 2 1
32 32 H 1.08999 * 109.47416 * 180.02562 * 7 5 4
33 33 H 1.09001 * 109.46985 * 299.99375 * 7 5 4
34 34 H 1.08995 * 109.47250 * 59.99633 * 7 5 4
35 35 H 0.97002 * 120.00250 * 24.99090 * 8 5 4
36 36 H 1.08001 * 126.55501 * 0.03611 * 12 11 9
37 37 H 1.08999 * 109.46865 * 89.99782 * 14 13 12
38 38 H 1.09006 * 109.46961 * 209.99894 * 14 13 12
39 39 H 1.09002 * 109.46987 * 329.99574 * 14 13 12
40 40 H 0.96705 * 114.00121 * 269.98436 * 16 15 13
41 41 H 0.96998 * 120.00155 * 94.99457 * 18 2 1
42 42 H 0.97000 * 119.99556 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 3.5648 -0.6135 -1.3135
6 1 3.8570 0.4356 -1.2677
7 6 4.0645 -1.2253 -2.6239
8 7 4.1536 -1.3343 -0.1822
9 6 5.3747 -0.9911 0.2736
10 8 5.9880 -0.0832 -0.2547
11 6 5.9663 -1.7153 1.4110
12 6 7.1851 -1.4753 1.9707
13 7 7.3359 -2.3687 2.9896
14 6 8.4968 -2.4824 3.8758
15 6 6.2113 -3.1352 3.0349
16 8 5.9773 -4.1390 3.9138
17 7 5.3945 -2.7447 2.0922
18 7 2.0183 -0.6905 1.1963
19 6 2.1490 -0.0072 2.3758
20 1 1.8926 1.0407 2.4241
21 6 2.6122 -0.6615 3.5091
22 7 2.9252 -1.9385 3.4501
23 14 2.7899 0.2704 5.1183
24 1 1.5223 0.1783 5.8863
25 1 3.8950 -0.3222 5.9140
26 1 3.0939 1.6959 4.8339
27 1 -0.3634 0.5139 0.8899
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.6054 -0.2619 -2.1369
31 1 1.7516 -1.7716 -1.2054
32 1 5.1508 -1.1488 -2.6696
33 1 3.7723 -2.2744 -2.6697
34 1 3.6264 -0.6890 -3.4656
35 1 3.6646 -2.0585 0.2389
36 1 7.8958 -0.7215 1.6658
37 1 8.3539 -1.8416 4.7459
38 1 8.6060 -3.5173 4.2006
39 1 9.3944 -2.1732 3.3403
40 1 6.2789 -5.0061 3.6100
41 1 2.2489 -1.6317 1.1528
42 1 3.2485 -2.3957 4.2422
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135386716.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:57
Heat of formation + Delta-G solvation = -16.704176 kcal
Electronic energy + Delta-G solvation = -25569.088619 eV
Core-core repulsion = 21971.619099 eV
Total energy + Delta-G solvation = -3597.469519 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.89939 -40.40251 -38.28677 -37.93530 -35.64551 -34.97713 -33.83350 -31.95264
-30.16471 -29.81270 -27.92718 -27.52002 -25.42834 -24.45061 -22.33288 -21.88469
-21.56159 -20.77550 -19.32156 -18.94908 -18.29599 -17.25386 -16.99431 -16.58904
-16.38890 -15.65214 -15.52832 -15.35055 -15.23910 -15.07098 -14.64837 -14.23038
-14.10837 -13.55069 -13.49320 -13.37782 -13.25483 -13.07684 -12.86679 -12.75939
-12.70290 -12.57408 -12.22821 -12.11333 -11.66202 -11.49501 -11.34056 -11.07804
-10.78616 -10.67316 -10.48632 -9.76719 -9.25966 -8.66414 -7.64405 -4.89324
0.69801 1.40298 1.42387 1.47271 1.47694 1.60695 2.49621 2.64372
2.84083 3.08299 3.62674 3.84012 3.89635 3.96628 4.11159 4.24904
4.28556 4.38719 4.46073 4.59605 4.63097 4.65995 4.76807 4.89150
4.92323 4.98291 5.09298 5.13260 5.19285 5.20580 5.42520 5.47477
5.54505 5.67828 5.70721 5.83650 5.90116 6.48523 6.76326 6.85462
7.09732 7.54635 7.58872 8.33991 8.59680 9.50122
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.011896 B = 0.007737 C = 0.005394
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2353.192954 B = 3618.200430 C = 5189.247428
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.162 3.838
3 H 0.027 0.973
4 C -0.119 4.119
5 C 0.143 3.857
6 H 0.058 0.942
7 C -0.149 4.149
8 N -0.679 5.679
9 C 0.605 3.395
10 O -0.597 6.597
11 C -0.072 4.072
12 C 0.031 3.969
13 N -0.461 5.461
14 C 0.066 3.934
15 C 0.359 3.641
16 O -0.443 6.443
17 N -0.425 5.425
18 N -0.717 5.717
19 C -0.246 4.246
20 H 0.049 0.951
21 C -0.041 4.041
22 N -0.895 5.895
23 Si 0.930 3.070
24 H -0.293 1.293
25 H -0.307 1.307
26 H -0.289 1.289
27 H 0.026 0.974
28 H 0.069 0.931
29 H 0.045 0.955
30 H 0.110 0.890
31 H 0.071 0.929
32 H 0.041 0.959
33 H 0.064 0.936
34 H 0.088 0.912
35 H 0.407 0.593
36 H 0.209 0.791
37 H 0.074 0.926
38 H 0.107 0.893
39 H 0.116 0.884
40 H 0.414 0.586
41 H 0.374 0.626
42 H 0.241 0.759
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.479 -5.104 -6.683 12.672
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.053 3.947
3 H 0.045 0.955
4 C -0.157 4.157
5 C 0.039 3.961
6 H 0.077 0.923
7 C -0.208 4.208
8 N -0.328 5.328
9 C 0.392 3.608
10 O -0.480 6.480
11 C -0.202 4.202
12 C -0.108 4.108
13 N -0.156 5.156
14 C -0.075 4.075
15 C 0.057 3.943
16 O -0.245 6.245
17 N -0.153 5.153
18 N -0.360 5.360
19 C -0.379 4.379
20 H 0.067 0.933
21 C -0.238 4.238
22 N -0.542 5.542
23 Si 0.763 3.237
24 H -0.221 1.221
25 H -0.235 1.235
26 H -0.215 1.215
27 H 0.046 0.954
28 H 0.088 0.912
29 H 0.064 0.936
30 H 0.129 0.871
31 H 0.090 0.910
32 H 0.060 0.940
33 H 0.083 0.917
34 H 0.107 0.893
35 H 0.245 0.755
36 H 0.225 0.775
37 H 0.093 0.907
38 H 0.126 0.874
39 H 0.135 0.865
40 H 0.273 0.727
41 H 0.209 0.791
42 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges 8.920 -4.407 -6.591 11.934
hybrid contribution 0.752 -0.016 1.894 2.037
sum 9.672 -4.423 -4.698 11.627
Atomic orbital electron populations
1.22269 0.97855 1.00810 1.00267 1.20478 0.92691 0.94796 0.86735
0.95526 1.22118 0.92994 1.01848 0.98766 1.20999 0.93393 0.96012
0.85707 0.92344 1.22094 1.00745 1.01653 0.96272 1.45856 1.16811
1.36909 1.33207 1.16995 0.81560 0.81364 0.80840 1.90652 1.63706
1.32481 1.61199 1.20479 0.95270 1.02046 1.02385 1.22778 0.99806
0.97377 0.90801 1.45981 1.16347 1.27153 1.26124 1.22382 0.85828
1.05585 0.93679 1.20419 0.84741 0.94223 0.94952 1.84931 1.82199
1.18244 1.39162 1.70939 1.25829 1.12712 1.05803 1.42434 1.78231
1.09886 1.05496 1.19059 1.36959 0.93079 0.88759 0.93333 1.25033
1.03316 0.96760 0.98695 1.69723 1.49416 1.07709 1.27383 0.85826
0.76277 0.77987 0.83617 1.22124 1.23459 1.21529 0.95437 0.91183
0.93566 0.87130 0.91034 0.93998 0.91722 0.89297 0.75523 0.77457
0.90717 0.87437 0.86518 0.72707 0.79111 0.94946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.32 9.49 71.98 0.68 -4.64 16
2 C 0.16 6.34 2.89 44.99 0.13 6.47 16
3 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16
4 C -0.12 -3.62 4.43 30.59 0.14 -3.48 16
5 C 0.14 4.88 2.57 44.99 0.12 5.00 16
6 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16
7 C -0.15 -4.02 9.48 71.98 0.68 -3.34 16
8 N -0.68 -27.58 3.80 -445.97 -1.69 -29.27 16
9 C 0.61 26.87 7.77 86.61 0.67 27.54 16
10 O -0.60 -28.00 16.54 -4.14 -0.07 -28.06 16
11 C -0.07 -3.06 6.97 40.40 0.28 -2.77 16
12 C 0.03 1.06 11.29 83.53 0.94 2.01 16
13 N -0.46 -13.71 3.16 -662.74 -2.09 -15.81 16
14 C 0.07 1.13 11.11 127.77 1.42 2.55 16
15 C 0.36 13.07 9.03 179.84 1.62 14.70 16
16 O -0.44 -13.75 13.55 -87.55 -1.19 -14.93 16
17 N -0.42 -18.43 10.21 -303.16 -3.09 -21.52 16
18 N -0.72 -35.08 3.84 -322.93 -1.24 -36.33 16
19 C -0.25 -13.90 9.93 84.03 0.83 -13.07 16
20 H 0.05 2.82 7.83 -2.91 -0.02 2.79 16
21 C -0.04 -2.37 5.50 84.86 0.47 -1.91 16
22 N -0.90 -52.29 12.23 21.65 0.26 -52.02 16
23 Si 0.93 48.69 29.55 68.60 2.03 50.72 16
24 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16
25 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16
26 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16
27 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16
28 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16
29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16
30 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16
31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
35 H 0.41 17.64 6.22 -92.71 -0.58 17.07 16
36 H 0.21 5.83 8.06 -2.91 -0.02 5.80 16
37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
38 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16
39 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16
40 H 0.41 7.49 9.06 -74.05 -0.67 6.82 16
41 H 0.37 19.17 5.70 -92.71 -0.53 18.64 16
42 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16
Total: -1.00 -77.02 355.07 0.18 -76.84
By element:
Atomic # 1 Polarization: 42.06 SS G_CDS: -0.72 Total: 41.34 kcal
Atomic # 6 Polarization: 21.06 SS G_CDS: 7.99 Total: 29.05 kcal
Atomic # 7 Polarization: -147.09 SS G_CDS: -7.86 Total: -154.95 kcal
Atomic # 8 Polarization: -41.74 SS G_CDS: -1.25 Total: -43.00 kcal
Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.72 kcal
Total: -77.02 0.18 -76.84 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135386716.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.132 kcal
(2) G-P(sol) polarization free energy of solvation -77.017 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.885 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.836 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.704 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds