Wall clock time and date at job start Tue Mar 31 2020 03:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99873 * 2 1 4 4 O 1.21583 * 120.00136 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99965 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00104 * 179.97438 * 5 3 2 7 7 C 1.50694 * 109.47100 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99974 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99973 * 179.97438 * 7 6 5 10 10 C 1.47892 * 134.34311 * 180.02562 * 9 7 6 11 11 C 1.52375 * 85.73257 * 156.54358 * 10 9 7 12 12 C 1.48161 * 134.44944 * 359.88843 * 9 7 6 13 13 C 1.53654 * 116.39618 * 141.28147 * 11 10 9 14 14 C 1.54605 * 102.73195 * 162.91767 * 13 11 10 15 15 N 1.47144 * 107.36262 * 339.24918 * 14 13 11 16 16 C 1.36937 * 125.58305 * 179.09493 * 15 14 13 17 17 H 1.08002 * 119.99549 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00398 * 359.97438 * 16 15 14 19 19 N 1.31627 * 119.99797 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00157 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47132 * 59.99893 * 20 18 16 22 22 H 1.48496 * 109.47128 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47063 * 300.00077 * 20 18 16 24 24 C 1.47719 * 108.82637 * 359.07314 * 15 14 13 25 25 H 1.08995 * 109.47249 * 59.99600 * 1 2 3 26 26 H 1.09005 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47206 * 299.99591 * 1 2 3 28 28 H 0.96995 * 119.99942 * 180.02562 * 2 1 3 29 29 H 0.97002 * 119.99882 * 0.02562 * 5 3 2 30 30 H 1.09001 * 109.46964 * 59.99860 * 6 5 3 31 31 H 1.09003 * 109.46812 * 300.00483 * 6 5 3 32 32 H 1.09002 * 113.85436 * 42.31390 * 10 9 7 33 33 H 1.08998 * 113.84884 * 270.77567 * 10 9 7 34 34 H 1.08997 * 113.74300 * 89.28005 * 12 9 7 35 35 H 1.09006 * 114.04347 * 317.66282 * 12 9 7 36 36 H 1.08994 * 110.76150 * 281.23220 * 13 11 10 37 37 H 1.09004 * 110.75900 * 44.61270 * 13 11 10 38 38 H 1.08996 * 109.86482 * 98.69071 * 14 13 11 39 39 H 1.08997 * 109.86858 * 219.66814 * 14 13 11 40 40 H 0.96999 * 119.99806 * 180.02562 * 19 18 16 41 41 H 1.09004 * 110.40181 * 263.66202 * 24 15 14 42 42 H 1.09001 * 110.40025 * 141.25086 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2191 2.4359 0.0000 7 6 5.7007 2.1606 0.0001 8 8 6.1050 1.0171 0.0001 9 7 6.5765 3.1850 -0.0009 10 6 8.0522 3.2834 -0.0016 11 6 7.8461 4.6663 -0.6072 12 6 6.4469 4.6609 -0.0043 13 6 8.7948 5.7731 -0.1214 14 6 8.6292 6.8636 -1.2048 15 7 8.0903 6.2093 -2.4076 16 6 7.7846 6.8359 -3.5862 17 1 7.3926 6.2653 -4.4152 18 6 7.9786 8.2043 -3.7156 19 7 8.4558 8.8997 -2.7051 20 14 7.5622 9.0588 -5.3236 21 1 6.1204 8.8707 -5.6253 22 1 7.8574 10.5092 -5.2043 23 1 8.3774 8.4757 -6.4195 24 6 7.9335 4.7659 -2.1354 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.9717 0.3271 0.0005 30 1 3.9554 3.0081 0.8895 31 1 3.9561 3.0069 -0.8905 32 1 8.5408 2.5767 -0.6725 33 1 8.4932 3.2998 0.9950 34 1 6.3946 5.0991 0.9924 35 1 5.6759 5.0375 -0.6766 36 1 8.4845 6.1473 0.8541 37 1 9.8234 5.4136 -0.0893 38 1 7.9354 7.6288 -0.8570 39 1 9.5963 7.3142 -1.4277 40 1 8.5910 9.8560 -2.7953 41 1 8.7984 4.2137 -2.5032 42 1 7.0187 4.3900 -2.5936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147670087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:11 Heat of formation + Delta-G solvation = 8.190747 kcal Electronic energy + Delta-G solvation = -23939.084505 eV Core-core repulsion = 20342.694511 eV Total energy + Delta-G solvation = -3596.389995 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72754 -40.02969 -38.41887 -35.67059 -34.88369 -34.45499 -32.29627 -30.15737 -29.04242 -27.86730 -26.34978 -26.12700 -25.17757 -23.46767 -21.08512 -20.34922 -19.73449 -18.77296 -18.30543 -16.99737 -16.92260 -16.46662 -16.12649 -15.63857 -15.38299 -14.81322 -14.51096 -14.46564 -14.25955 -13.82061 -13.75823 -13.34845 -12.93927 -12.56145 -12.50787 -12.46267 -12.24459 -11.88090 -11.84624 -11.13783 -10.95194 -10.77615 -10.49669 -10.45306 -10.32612 -10.13951 -9.91218 -9.69791 -9.63365 -9.55803 -9.10382 -8.67265 -8.61876 -6.87278 -5.73988 -3.07696 2.29543 2.51605 2.92385 3.02352 3.40153 3.44800 3.45509 4.07709 4.24375 4.46601 4.63873 4.90862 4.93737 5.11173 5.23028 5.27422 5.30967 5.40516 5.47487 5.52538 5.61609 5.67279 5.69923 5.72224 5.82193 6.10779 6.17383 6.17637 6.18703 6.42861 6.47002 6.62275 6.65862 6.67430 7.52426 7.56988 7.65892 7.77824 7.79562 8.01390 8.22302 8.39007 9.19273 9.78869 10.43887 11.37533 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.003310 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.255527 B = 8458.353687 C = 9575.883650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.705 3.295 4 O -0.590 6.590 5 N -0.734 5.734 6 C 0.125 3.875 7 C 0.531 3.469 8 O -0.552 6.552 9 N -0.636 5.636 10 C 0.125 3.875 11 C -0.105 4.105 12 C 0.119 3.881 13 C -0.131 4.131 14 C 0.178 3.822 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.162 3.838 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.399 0.601 29 H 0.407 0.593 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.253 0.747 41 H 0.025 0.975 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -15.648 9.051 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.407 5.407 3 C 0.404 3.596 4 O -0.467 6.467 5 N -0.393 5.393 6 C -0.003 4.003 7 C 0.320 3.680 8 O -0.431 6.431 9 N -0.371 5.371 10 C 0.002 3.998 11 C -0.106 4.106 12 C -0.003 4.003 13 C -0.170 4.170 14 C 0.053 3.947 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.035 3.965 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.232 0.768 29 H 0.244 0.756 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.500 -15.187 8.956 19.574 hybrid contribution 0.243 -0.224 -0.795 0.861 sum -8.258 -15.412 8.161 19.296 Atomic orbital electron populations 1.21399 0.77981 1.01937 1.02388 1.44868 1.07787 1.07112 1.80897 1.15838 0.81382 0.84414 0.77934 1.90953 1.67883 1.30209 1.57694 1.44733 1.04646 1.09697 1.80222 1.20806 0.88011 0.86508 1.04992 1.20085 0.87711 0.84170 0.76022 1.90662 1.79816 1.20759 1.51852 1.50200 1.08000 1.07039 1.71821 1.23034 0.79789 0.96142 1.00801 1.22461 0.95124 0.94198 0.98862 1.23218 0.98607 0.77344 1.01109 1.22680 0.97838 0.96543 0.99944 1.21213 0.98856 0.91028 0.83553 1.44547 1.75774 1.01057 1.11737 1.18992 1.36645 0.90699 0.89417 0.90540 1.24784 1.01315 0.96309 0.97872 1.69944 1.50578 1.06701 1.29731 0.86202 0.78154 0.78598 0.82825 1.21133 1.21596 1.21196 1.21042 0.98287 0.87934 0.89188 0.92274 0.90669 0.92344 0.76835 0.75608 0.88537 0.88281 0.89910 0.89571 0.89234 0.89029 0.91644 0.91662 0.93407 0.93806 0.93677 0.95740 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.77 10.70 59.85 0.64 1.41 16 2 N -0.75 -6.53 5.72 -72.07 -0.41 -6.94 16 3 C 0.70 8.93 8.57 -86.92 -0.74 8.19 16 4 O -0.59 -9.83 16.34 5.29 0.09 -9.75 16 5 N -0.73 -8.60 5.53 -66.42 -0.37 -8.97 16 6 C 0.12 1.55 5.91 -5.20 -0.03 1.52 16 7 C 0.53 7.45 8.13 -10.99 -0.09 7.36 16 8 O -0.55 -8.99 16.39 5.56 0.09 -8.90 16 9 N -0.64 -8.66 3.63 -185.47 -0.67 -9.34 16 10 C 0.12 1.63 8.20 -3.60 -0.03 1.60 16 11 C -0.10 -1.60 0.99 -154.82 -0.15 -1.75 16 12 C 0.12 1.61 7.93 -3.46 -0.03 1.58 16 13 C -0.13 -2.12 6.36 -25.55 -0.16 -2.28 16 14 C 0.18 4.00 5.39 -2.85 -0.02 3.99 16 15 N -0.60 -14.61 3.41 -170.50 -0.58 -15.19 16 16 C -0.23 -6.20 10.28 -15.06 -0.15 -6.36 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -26.29 10.30 55.49 0.57 -25.72 16 20 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.16 3.14 6.63 -3.17 -0.02 3.11 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.40 2.29 8.84 -40.82 -0.36 1.93 16 29 H 0.41 4.30 7.45 -40.82 -0.30 4.00 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 36 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 39 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -34.00 349.56 -8.38 -42.39 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.46 Total: 2.27 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: -0.88 Total: 18.10 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -1.46 Total: -66.15 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.18 Total: -18.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.00 -8.38 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147670087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.576 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds