Wall clock time and date at job start Tue Mar 31 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 O 1.42904 * 109.46934 * 240.00288 * 2 1 3 5 5 C 1.42896 * 113.99656 * 89.99584 * 4 2 1 6 6 C 1.50713 * 109.46644 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99871 * 0.02562 * 6 5 4 8 8 N 1.34769 * 119.99747 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00028 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47447 * 180.02562 * 9 8 6 11 11 N 1.46496 * 109.47350 * 179.97438 * 10 9 8 12 12 C 1.36938 * 120.00171 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00008 * 359.97438 * 12 11 10 14 14 C 1.38813 * 120.00088 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99896 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00143 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47109 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47254 * 120.00124 * 16 14 12 19 19 H 1.48498 * 109.47312 * 240.00363 * 16 14 12 20 20 C 1.50694 * 109.47341 * 120.00132 * 2 1 3 21 21 N 1.30502 * 125.64996 * 75.17616 * 20 2 1 22 22 C 1.34128 * 109.25609 * 180.29462 * 21 20 2 23 23 C 1.34670 * 108.02237 * 359.72151 * 22 21 20 24 24 N 1.35046 * 125.65115 * 255.00236 * 20 2 1 25 25 C 1.46499 * 126.39639 * 359.97025 * 24 20 2 26 26 H 1.09006 * 109.47171 * 299.99824 * 1 2 3 27 27 H 1.08996 * 109.47582 * 59.99806 * 1 2 3 28 28 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47814 * 299.99595 * 5 4 2 30 30 H 1.08999 * 109.47187 * 60.01010 * 5 4 2 31 31 H 0.97005 * 120.00230 * 359.97438 * 8 6 5 32 32 H 1.09010 * 109.46630 * 299.99967 * 9 8 6 33 33 H 1.08996 * 109.47058 * 59.99677 * 9 8 6 34 34 H 1.09001 * 109.47332 * 300.00176 * 10 9 8 35 35 H 1.09002 * 109.46910 * 59.99607 * 10 9 8 36 36 H 0.96995 * 119.99870 * 359.97438 * 11 10 9 37 37 H 0.97003 * 120.00325 * 179.97438 * 15 14 12 38 38 H 1.07999 * 125.99228 * 179.72379 * 22 21 20 39 39 H 1.07997 * 126.59514 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47391 * 269.71816 * 25 24 20 41 41 H 1.09001 * 109.46813 * 149.71873 * 25 24 20 42 42 H 1.09004 * 109.47041 * 29.72000 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1999 0.1830 -2.2941 6 6 2.7013 -0.6281 -3.4611 7 8 2.8751 -1.8223 -3.3395 8 7 2.9564 -0.0265 -4.6398 9 6 3.4432 -0.8151 -5.7745 10 6 3.6519 0.1022 -6.9810 11 7 4.1393 -0.6862 -8.1154 12 6 4.3996 -0.0748 -9.3128 13 1 4.2452 0.9886 -9.4209 14 6 4.8609 -0.8220 -10.3878 15 7 5.0486 -2.1181 -10.2562 16 14 5.2154 0.0119 -12.0213 17 1 4.9249 1.4640 -11.9092 18 1 6.6443 -0.1815 -12.3761 19 1 4.3581 -0.5837 -13.0775 20 6 2.0324 -0.7104 1.2304 21 7 2.0301 -2.0020 1.4171 22 6 2.5445 -2.2751 2.6254 23 6 2.8838 -1.1089 3.2071 24 7 2.5625 -0.1162 2.3211 25 6 2.7525 1.3226 2.5211 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2536 0.6547 -2.5589 30 1 2.9319 0.9514 -2.0451 31 1 2.8170 0.9285 -4.7371 32 1 4.3894 -1.2872 -5.5095 33 1 2.7112 -1.5832 -6.0238 34 1 2.7061 0.5747 -7.2461 35 1 4.3841 0.8701 -6.7313 36 1 4.2783 -1.6412 -8.0182 37 1 5.3706 -2.6403 -11.0076 38 1 2.6654 -3.2580 3.0563 39 1 3.3242 -0.9813 4.1849 40 1 3.7376 1.6133 2.1560 41 1 2.6756 1.5550 3.5833 42 1 1.9857 1.8701 1.9730 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149294922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:17 Heat of formation + Delta-G solvation = 1.545611 kcal Electronic energy + Delta-G solvation = -22802.229857 eV Core-core repulsion = 19205.551707 eV Total energy + Delta-G solvation = -3596.678149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.39662 -39.70868 -38.05712 -35.62781 -34.38463 -33.82331 -32.60191 -31.27900 -29.01201 -28.88055 -27.41329 -26.78878 -23.94381 -23.42287 -21.66258 -21.46066 -20.52586 -20.08664 -17.87299 -17.38538 -17.05123 -16.70559 -16.33410 -16.00506 -15.38901 -15.02776 -14.88262 -14.54899 -14.25786 -13.91491 -13.72825 -13.53342 -13.25306 -13.18906 -13.17187 -12.94708 -12.84715 -12.54147 -12.33335 -11.42759 -11.37698 -11.10858 -10.82621 -10.81031 -10.17551 -10.08570 -10.04853 -9.90556 -9.84260 -9.63288 -8.98733 -8.82174 -8.70919 -6.99062 -5.79115 -3.10057 1.63786 2.23600 2.71372 2.76520 3.02482 3.42327 3.46954 3.50056 3.74410 4.02469 4.20339 4.33776 4.53649 4.58156 4.61320 4.70182 4.75728 4.84444 4.85375 4.97443 5.12941 5.23618 5.35444 5.42077 5.50676 5.53575 5.79392 5.83380 5.93535 5.96806 6.16007 6.45760 6.48343 6.65420 6.70766 6.76222 6.85314 7.60939 7.66366 7.89886 8.34433 8.38599 9.49579 10.04624 10.39196 11.43459 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038855 B = 0.002043 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.459710 B =13703.462187 C =13892.950868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.073 0.927 4 O -0.334 6.334 5 C 0.042 3.958 6 C 0.509 3.491 7 O -0.513 6.513 8 N -0.723 5.723 9 C 0.112 3.888 10 C 0.145 3.855 11 N -0.730 5.730 12 C -0.244 4.244 13 H 0.072 0.928 14 C -0.013 4.013 15 N -0.930 5.930 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.201 3.799 21 N -0.456 5.456 22 C -0.028 4.028 23 C -0.056 4.056 24 N -0.458 5.458 25 C 0.067 3.933 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.399 0.601 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 11.718 29.813 33.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.117 3.883 3 H 0.091 0.909 4 O -0.251 6.251 5 C -0.038 4.038 6 C 0.293 3.707 7 O -0.387 6.387 8 N -0.377 5.377 9 C -0.011 4.011 10 C 0.017 3.983 11 N -0.375 5.375 12 C -0.375 4.375 13 H 0.090 0.910 14 C -0.209 4.209 15 N -0.578 5.578 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.061 4.061 21 N -0.174 5.174 22 C -0.177 4.177 23 C -0.189 4.189 24 N -0.143 5.143 25 C -0.075 4.075 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.189 0.811 39 H 0.193 0.807 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.079 10.315 29.214 32.017 hybrid contribution 0.600 1.477 -0.221 1.609 sum -7.479 11.791 28.993 32.180 Atomic orbital electron populations 1.22248 0.93532 1.04518 1.02304 1.20028 0.94103 0.92993 0.81218 0.90921 1.88239 1.86374 1.32467 1.17973 1.22331 1.01342 0.93076 0.87100 1.20069 0.78717 0.88470 0.83444 1.90781 1.50207 1.14869 1.82852 1.45793 1.68279 1.12299 1.11325 1.21590 0.99922 0.94713 0.84866 1.20749 0.97094 0.93525 0.86913 1.42204 1.79512 1.08065 1.07729 1.19231 1.37224 0.92878 0.88152 0.90972 1.24798 1.02034 0.95677 0.98428 1.69680 1.51924 1.04984 1.31170 0.86073 0.77593 0.78328 0.83878 1.20528 1.21780 1.21775 1.22801 1.03337 0.89246 0.90734 1.70308 1.18709 1.11789 1.16615 1.22437 1.04453 0.98317 0.92459 1.22728 1.09832 0.88219 0.98114 1.45266 1.46615 1.07670 1.14741 1.22098 1.03508 0.77751 1.04169 0.91611 0.91211 0.90255 0.89979 0.90348 0.76744 0.91205 0.91135 0.95766 0.95822 0.77957 0.93382 0.81110 0.80651 0.90256 0.89283 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.51 37.16 0.35 -0.96 16 2 C 0.18 1.67 2.99 -27.89 -0.08 1.58 16 3 H 0.07 0.42 6.71 -51.93 -0.35 0.07 16 4 O -0.33 -4.47 9.50 -55.14 -0.52 -4.99 16 5 C 0.04 0.42 6.23 36.01 0.22 0.65 16 6 C 0.51 7.61 7.91 -10.98 -0.09 7.52 16 7 O -0.51 -10.54 16.50 -14.36 -0.24 -10.78 16 8 N -0.72 -9.75 5.56 -60.29 -0.33 -10.09 16 9 C 0.11 1.96 5.79 -4.04 -0.02 1.94 16 10 C 0.15 2.83 6.37 -4.05 -0.03 2.81 16 11 N -0.73 -18.68 5.60 -59.91 -0.34 -19.02 16 12 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 13 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 14 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 15 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 16 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 C 0.20 2.29 6.79 -155.41 -1.05 1.24 16 21 N -0.46 -6.52 11.25 -10.82 -0.12 -6.65 16 22 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 23 C -0.06 -0.46 11.58 -16.56 -0.19 -0.65 16 24 N -0.46 -3.77 3.15 -121.28 -0.38 -4.16 16 25 C 0.07 0.23 10.76 59.85 0.64 0.87 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 32 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.39 10.52 7.67 -40.82 -0.31 10.21 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 42 H 0.09 0.16 7.31 -51.93 -0.38 -0.22 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -39.67 362.16 -7.88 -47.55 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.40 Total: 6.04 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.70 Total: 7.03 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -0.45 Total: -67.64 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.76 Total: -15.77 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.67 -7.88 -47.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149294922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.094 kcal (2) G-P(sol) polarization free energy of solvation -39.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds