Wall clock time and date at job start Tue Mar 31 2020 03:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 O 1.42904 * 109.46934 * 240.00288 * 2 1 3 5 5 C 1.42896 * 113.99656 * 89.99584 * 4 2 1 6 6 C 1.50713 * 109.46644 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99871 * 0.02562 * 6 5 4 8 8 N 1.34769 * 119.99747 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00028 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47447 * 180.02562 * 9 8 6 11 11 N 1.46496 * 109.47350 * 179.97438 * 10 9 8 12 12 C 1.36938 * 120.00171 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00008 * 359.97438 * 12 11 10 14 14 C 1.38813 * 120.00088 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99896 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00143 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47109 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47254 * 120.00124 * 16 14 12 19 19 H 1.48498 * 109.47312 * 240.00363 * 16 14 12 20 20 C 1.50694 * 109.47341 * 120.00132 * 2 1 3 21 21 N 1.30502 * 125.64996 * 75.17616 * 20 2 1 22 22 C 1.34128 * 109.25609 * 180.29462 * 21 20 2 23 23 C 1.34670 * 108.02237 * 359.72151 * 22 21 20 24 24 N 1.35046 * 125.65115 * 255.00236 * 20 2 1 25 25 C 1.46499 * 126.39639 * 359.97025 * 24 20 2 26 26 H 1.09006 * 109.47171 * 299.99824 * 1 2 3 27 27 H 1.08996 * 109.47582 * 59.99806 * 1 2 3 28 28 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47814 * 299.99595 * 5 4 2 30 30 H 1.08999 * 109.47187 * 60.01010 * 5 4 2 31 31 H 0.97005 * 120.00230 * 359.97438 * 8 6 5 32 32 H 1.09010 * 109.46630 * 299.99967 * 9 8 6 33 33 H 1.08996 * 109.47058 * 59.99677 * 9 8 6 34 34 H 1.09001 * 109.47332 * 300.00176 * 10 9 8 35 35 H 1.09002 * 109.46910 * 59.99607 * 10 9 8 36 36 H 0.96995 * 119.99870 * 359.97438 * 11 10 9 37 37 H 0.97003 * 120.00325 * 179.97438 * 15 14 12 38 38 H 1.07999 * 125.99228 * 179.72379 * 22 21 20 39 39 H 1.07997 * 126.59514 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47391 * 269.71816 * 25 24 20 41 41 H 1.09001 * 109.46813 * 149.71873 * 25 24 20 42 42 H 1.09004 * 109.47041 * 29.72000 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1999 0.1830 -2.2941 6 6 2.7013 -0.6281 -3.4611 7 8 2.8751 -1.8223 -3.3395 8 7 2.9564 -0.0265 -4.6398 9 6 3.4432 -0.8151 -5.7745 10 6 3.6519 0.1022 -6.9810 11 7 4.1393 -0.6862 -8.1154 12 6 4.3996 -0.0748 -9.3128 13 1 4.2452 0.9886 -9.4209 14 6 4.8609 -0.8220 -10.3878 15 7 5.0486 -2.1181 -10.2562 16 14 5.2154 0.0119 -12.0213 17 1 4.9249 1.4640 -11.9092 18 1 6.6443 -0.1815 -12.3761 19 1 4.3581 -0.5837 -13.0775 20 6 2.0324 -0.7104 1.2304 21 7 2.0301 -2.0020 1.4171 22 6 2.5445 -2.2751 2.6254 23 6 2.8838 -1.1089 3.2071 24 7 2.5625 -0.1162 2.3211 25 6 2.7525 1.3226 2.5211 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2536 0.6547 -2.5589 30 1 2.9319 0.9514 -2.0451 31 1 2.8170 0.9285 -4.7371 32 1 4.3894 -1.2872 -5.5095 33 1 2.7112 -1.5832 -6.0238 34 1 2.7061 0.5747 -7.2461 35 1 4.3841 0.8701 -6.7313 36 1 4.2783 -1.6412 -8.0182 37 1 5.3706 -2.6403 -11.0076 38 1 2.6654 -3.2580 3.0563 39 1 3.3242 -0.9813 4.1849 40 1 3.7376 1.6133 2.1560 41 1 2.6756 1.5550 3.5833 42 1 1.9857 1.8701 1.9730 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149294922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:16 Heat of formation + Delta-G solvation = -29.370157 kcal Electronic energy + Delta-G solvation = -22803.570465 eV Core-core repulsion = 19205.551707 eV Total energy + Delta-G solvation = -3598.018758 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.05256 -40.85907 -38.95006 -37.27332 -35.50324 -34.95277 -33.39334 -33.08113 -30.29538 -29.62233 -28.13763 -27.79196 -25.46381 -24.47224 -23.09718 -22.31350 -21.67712 -20.78572 -19.35175 -18.58985 -17.91740 -17.70764 -17.20581 -16.85524 -16.62458 -16.36031 -16.04346 -15.74043 -15.24379 -15.11878 -14.97127 -14.77067 -14.44954 -14.26463 -13.82974 -13.68628 -13.44808 -13.29433 -13.04330 -13.03108 -12.94545 -12.68354 -12.50407 -12.04653 -12.03655 -11.84930 -11.00397 -10.96023 -10.90245 -10.78259 -10.55076 -10.17014 -9.38913 -9.06589 -7.96597 -5.28336 0.98860 1.48520 1.50527 1.57217 1.59143 1.61100 1.97236 2.18905 2.56798 2.99681 3.37821 3.39293 3.64671 3.88460 3.96531 4.03180 4.07219 4.12729 4.16107 4.20618 4.21182 4.35262 4.43321 4.55202 4.58841 4.67738 4.70247 4.75655 4.84382 5.02694 5.14155 5.22907 5.32154 5.35773 5.49580 5.81105 5.99918 6.24076 6.25745 6.56980 7.20559 7.24853 7.29922 8.02234 8.24628 9.27421 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038855 B = 0.002043 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.459710 B =13703.462187 C =13892.950868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.117 0.883 4 O -0.381 6.381 5 C 0.048 3.952 6 C 0.503 3.497 7 O -0.581 6.581 8 N -0.705 5.705 9 C 0.128 3.872 10 C 0.150 3.850 11 N -0.750 5.750 12 C -0.245 4.245 13 H 0.086 0.914 14 C -0.081 4.081 15 N -0.972 5.972 16 Si 0.981 3.019 17 H -0.259 1.259 18 H -0.294 1.294 19 H -0.295 1.295 20 C 0.180 3.820 21 N -0.521 5.521 22 C -0.071 4.071 23 C -0.038 4.038 24 N -0.453 5.453 25 C 0.056 3.944 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.422 0.578 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.373 0.627 37 H 0.252 0.748 38 H 0.176 0.824 39 H 0.215 0.785 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 16.086 31.077 35.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.114 3.886 3 H 0.134 0.866 4 O -0.299 6.299 5 C -0.031 4.031 6 C 0.290 3.710 7 O -0.460 6.460 8 N -0.360 5.360 9 C 0.003 3.997 10 C 0.024 3.976 11 N -0.393 5.393 12 C -0.377 4.377 13 H 0.104 0.896 14 C -0.273 4.273 15 N -0.623 5.623 16 Si 0.809 3.191 17 H -0.183 1.183 18 H -0.222 1.222 19 H -0.222 1.222 20 C -0.083 4.083 21 N -0.240 5.240 22 C -0.219 4.219 23 C -0.172 4.172 24 N -0.137 5.137 25 C -0.084 4.084 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.204 0.796 37 H 0.060 0.940 38 H 0.193 0.807 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.480 14.812 30.514 34.963 hybrid contribution 0.702 0.165 -0.480 0.866 sum -7.779 14.977 30.034 34.451 Atomic orbital electron populations 1.22220 0.92795 1.02773 1.04272 1.20357 0.94665 0.94362 0.79190 0.86578 1.88189 1.87001 1.35038 1.19693 1.22466 1.04209 0.92012 0.84403 1.21109 0.77206 0.88088 0.84582 1.90759 1.53127 1.18090 1.83985 1.45534 1.67338 1.13112 1.09988 1.21137 0.98530 0.94381 0.85680 1.20855 0.97797 0.93319 0.85660 1.42476 1.79880 1.07968 1.08964 1.19712 1.35527 0.93527 0.88900 0.89584 1.25724 1.02925 0.96345 1.02335 1.69856 1.53796 1.06663 1.31986 0.84964 0.76745 0.78276 0.79068 1.18332 1.22157 1.22176 1.23188 1.03929 0.88970 0.92235 1.70195 1.20866 1.14354 1.18629 1.22770 1.06453 1.00055 0.92580 1.23276 1.07620 0.87313 0.98949 1.45546 1.45035 1.09523 1.13563 1.22515 1.04777 0.74848 1.06285 0.89594 0.89156 0.93855 0.85911 0.86250 0.74024 0.93277 0.93172 0.94022 0.94085 0.79602 0.93956 0.80660 0.76826 0.89290 0.86957 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.51 71.98 0.68 -1.56 16 2 C 0.17 2.90 2.99 29.85 0.09 2.99 16 3 H 0.12 0.82 6.71 -2.39 -0.02 0.80 16 4 O -0.38 -9.83 9.50 -129.94 -1.23 -11.06 16 5 C 0.05 0.83 6.23 71.24 0.44 1.27 16 6 C 0.50 14.60 7.91 87.66 0.69 15.29 16 7 O -0.58 -24.79 16.50 16.00 0.26 -24.53 16 8 N -0.70 -17.80 5.56 -463.05 -2.57 -20.38 16 9 C 0.13 4.47 5.79 86.38 0.50 4.97 16 10 C 0.15 5.65 6.37 86.38 0.55 6.20 16 11 N -0.75 -38.41 5.60 -343.46 -1.92 -40.33 16 12 C -0.25 -13.55 9.99 84.03 0.84 -12.71 16 13 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 14 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 15 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 16 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 C 0.18 3.97 6.79 138.13 0.94 4.91 16 21 N -0.52 -15.64 11.25 -188.13 -2.12 -17.76 16 22 C -0.07 -1.62 11.87 83.52 0.99 -0.63 16 23 C -0.04 -0.56 11.58 83.09 0.96 0.40 16 24 N -0.45 -6.46 3.15 -537.61 -1.69 -8.16 16 25 C 0.06 0.15 10.76 127.77 1.37 1.53 16 26 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.09 0.83 7.87 -2.39 -0.02 0.81 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.12 1.13 7.87 -2.39 -0.02 1.11 16 30 H 0.12 1.09 8.08 -2.39 -0.02 1.08 16 31 H 0.42 6.74 8.47 -92.70 -0.79 5.95 16 32 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.37 20.88 7.67 -92.71 -0.71 20.17 16 37 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.11 -0.12 7.31 -2.38 -0.02 -0.14 16 Total: -1.00 -92.70 362.16 1.10 -91.60 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.46 Total: 24.81 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 8.53 Total: 18.42 kcal Atomic # 7 Polarization: -139.13 SS G_CDS: -8.02 Total: -147.15 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.97 Total: -35.59 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -92.70 1.10 -91.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149294922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.228 kcal (2) G-P(sol) polarization free energy of solvation -92.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds