Wall clock time and date at job start Tue Mar 31 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99902 * 2 1 4 4 C 1.52998 * 109.46856 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88692 * 125.01755 * 5 4 3 7 7 C 1.35371 * 107.22924 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50187 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.51803 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00207 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00345 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47336 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47280 * 180.02562 * 13 12 11 15 15 N 1.46502 * 109.46821 * 179.97438 * 14 13 12 16 16 C 1.36940 * 119.99526 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00037 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99755 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47227 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47658 * 119.99989 * 20 18 16 23 23 H 1.48503 * 109.47373 * 240.00140 * 20 18 16 24 24 N 1.28468 * 124.88202 * 305.02338 * 5 4 3 25 25 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47279 * 299.99940 * 1 2 3 27 27 H 1.08996 * 109.47408 * 60.00063 * 1 2 3 28 28 H 1.08996 * 109.47578 * 59.99843 * 3 2 1 29 29 H 1.09005 * 109.47176 * 299.99619 * 3 2 1 30 30 H 1.08991 * 109.47644 * 59.99853 * 4 3 2 31 31 H 1.09004 * 109.47035 * 299.99209 * 4 3 2 32 32 H 1.07998 * 126.38339 * 0.02562 * 6 5 4 33 33 H 1.07999 * 127.24829 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00006 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.47171 * 300.00083 * 12 11 9 36 36 H 1.09007 * 109.46888 * 60.00198 * 12 11 9 37 37 H 1.09010 * 109.47219 * 300.00345 * 13 12 11 38 38 H 1.08999 * 109.47020 * 60.00035 * 13 12 11 39 39 H 1.08996 * 109.47075 * 300.00122 * 14 13 12 40 40 H 1.08999 * 109.47190 * 59.99987 * 14 13 12 41 41 H 0.96996 * 120.00394 * 0.02562 * 15 14 13 42 42 H 0.96996 * 119.99924 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3355 4.2445 0.5689 8 6 4.5714 4.5259 -0.5883 9 6 4.5553 5.7951 -1.3437 10 8 5.2472 6.7269 -0.9816 11 7 3.7727 5.9206 -2.4338 12 6 3.7563 7.1796 -3.1827 13 6 2.7933 7.0571 -4.3652 14 6 2.7766 8.3718 -5.1478 15 7 1.8549 8.2541 -6.2804 16 6 1.6739 9.3139 -7.1286 17 1 2.2108 10.2362 -6.9628 18 6 0.8002 9.2027 -8.2015 19 7 0.1454 8.0789 -8.4033 20 14 0.5537 10.6480 -9.3590 21 1 1.3988 11.7861 -8.9167 22 1 0.9397 10.2503 -10.7367 23 1 -0.8739 11.0568 -9.3435 24 7 3.8773 3.4399 -0.8644 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8567 0.6438 -0.8907 31 1 3.8574 0.6436 0.8892 32 1 5.4223 2.4147 1.7428 33 1 6.0202 4.9071 1.0773 34 1 3.2204 5.1774 -2.7225 35 1 3.4280 7.9873 -2.5285 36 1 4.7589 7.3958 -3.5520 37 1 3.1220 6.2494 -5.0194 38 1 1.7907 6.8407 -3.9964 39 1 2.4482 9.1796 -4.4939 40 1 3.7793 8.5878 -5.5166 41 1 1.3724 7.4260 -6.4291 42 1 -0.4649 8.0011 -9.1533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162265084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:37 Heat of formation + Delta-G solvation = 6.758566 kcal Electronic energy + Delta-G solvation = -22493.061988 eV Core-core repulsion = 18896.609889 eV Total energy + Delta-G solvation = -3596.452099 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.97647 -39.36753 -38.49979 -35.98433 -34.39230 -34.27860 -32.01501 -31.03694 -30.11016 -29.28812 -26.94640 -25.63027 -24.29552 -22.89090 -21.99990 -21.70499 -21.11740 -19.87999 -18.24556 -17.36109 -16.97138 -16.72067 -16.48146 -16.08742 -15.81171 -15.54971 -15.10886 -14.57625 -14.36903 -14.10062 -14.00786 -13.63891 -13.36948 -13.23714 -12.90466 -12.60675 -12.35736 -12.18057 -11.89115 -11.62239 -11.17733 -10.92630 -10.90674 -10.77115 -10.58588 -10.29787 -10.17051 -9.97197 -9.68944 -9.59425 -9.39043 -8.96541 -8.86136 -6.90896 -5.75206 -3.03918 1.34285 1.84017 1.91012 3.12878 3.30470 3.37424 3.45127 3.50854 3.53187 3.96123 4.26776 4.41716 4.46235 4.60149 4.61328 4.81571 4.84299 4.94076 5.04827 5.14588 5.19326 5.20965 5.36448 5.37957 5.49288 5.59895 5.68559 6.01411 6.10367 6.11410 6.23428 6.35102 6.36071 6.47287 6.51438 6.83150 6.87348 7.40399 7.68823 7.72833 8.20765 8.43876 9.54985 10.12538 10.47229 11.47957 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.002408 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.874965 B =11623.109844 C =13327.350161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.283 5.283 6 C -0.016 4.016 7 C -0.177 4.177 8 C -0.010 4.010 9 C 0.601 3.399 10 O -0.535 6.535 11 N -0.714 5.714 12 C 0.122 3.878 13 C -0.138 4.138 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.238 4.238 17 H 0.072 0.928 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 N -0.261 5.261 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.184 0.816 33 H 0.164 0.836 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -18.752 22.740 30.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.158 4.158 7 C -0.205 4.205 8 C -0.171 4.171 9 C 0.385 3.615 10 O -0.410 6.410 11 N -0.365 5.365 12 C -0.001 4.001 13 C -0.176 4.176 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.369 4.369 17 H 0.090 0.910 18 C -0.212 4.212 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 N -0.097 5.097 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.201 0.799 33 H 0.182 0.818 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.954 -18.618 22.154 29.545 hybrid contribution -0.297 0.532 -0.266 0.665 sum 5.657 -18.086 21.888 28.951 Atomic orbital electron populations 1.22813 0.79581 1.03273 1.00656 1.87765 1.20869 1.26581 1.95652 1.22648 0.92028 0.85734 1.02478 1.21693 0.93184 0.78443 1.06276 1.45317 1.31231 1.11530 1.19132 1.22896 0.97875 0.96640 0.98383 1.21811 1.04470 0.95940 0.98310 1.22040 1.01532 0.93994 0.99527 1.16878 0.79865 0.84865 0.79924 1.90801 1.42533 1.39297 1.68366 1.45936 1.45058 1.17399 1.28062 1.21413 1.00667 0.85059 0.92985 1.21947 0.99068 1.00634 0.95952 1.20524 0.94027 0.93235 0.89389 1.42356 1.50540 1.15843 1.29108 1.19302 1.20050 0.93117 1.04435 0.91015 1.24757 0.99792 0.97392 0.99243 1.69673 1.31761 1.25066 1.31861 0.86095 0.77458 0.81700 0.80827 1.20501 1.21861 1.21875 1.73501 1.22742 0.97746 1.15694 0.89044 0.93748 0.93346 0.92446 0.91077 0.87772 0.86905 0.79925 0.81821 0.75871 0.91101 0.91089 0.91234 0.91273 0.95992 0.95976 0.78299 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.80 10.70 -35.23 -0.38 -3.18 16 3 C 0.05 0.32 6.04 37.16 0.22 0.54 16 4 C 0.12 0.68 6.77 -4.04 -0.03 0.65 16 5 N -0.28 -2.34 3.41 -61.33 -0.21 -2.55 16 6 C -0.02 -0.12 11.40 -17.17 -0.20 -0.31 16 7 C -0.18 -1.79 10.81 -39.36 -0.43 -2.22 16 8 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 9 C 0.60 8.84 7.83 -12.39 -0.10 8.74 16 10 O -0.53 -9.41 16.93 5.30 0.09 -9.32 16 11 N -0.71 -9.65 5.55 -61.29 -0.34 -9.99 16 12 C 0.12 1.77 5.67 -4.04 -0.02 1.75 16 13 C -0.14 -2.21 5.44 -26.73 -0.15 -2.36 16 14 C 0.16 3.19 6.26 -4.04 -0.03 3.17 16 15 N -0.73 -19.03 5.60 -59.91 -0.34 -19.37 16 16 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 17 H 0.07 2.00 7.83 -52.48 -0.41 1.58 16 18 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 19 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 20 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 N -0.26 -2.91 11.36 33.42 0.38 -2.53 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.11 0.31 8.04 -51.93 -0.42 -0.10 16 32 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.41 4.91 8.20 -40.82 -0.33 4.57 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 42 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -35.42 365.14 -6.55 -41.97 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.53 Total: 6.66 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.44 Total: 3.00 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.22 Total: -62.35 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.29 Total: -12.50 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.42 -6.55 -41.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162265084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.732 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds