Wall clock time and date at job start Tue Mar 31 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99902 * 2 1 4 4 C 1.52998 * 109.46856 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88692 * 125.01755 * 5 4 3 7 7 C 1.35371 * 107.22924 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50187 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.51803 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00207 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00345 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47336 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47280 * 180.02562 * 13 12 11 15 15 N 1.46502 * 109.46821 * 179.97438 * 14 13 12 16 16 C 1.36940 * 119.99526 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00037 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99755 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47227 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47658 * 119.99989 * 20 18 16 23 23 H 1.48503 * 109.47373 * 240.00140 * 20 18 16 24 24 N 1.28468 * 124.88202 * 305.02338 * 5 4 3 25 25 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47279 * 299.99940 * 1 2 3 27 27 H 1.08996 * 109.47408 * 60.00063 * 1 2 3 28 28 H 1.08996 * 109.47578 * 59.99843 * 3 2 1 29 29 H 1.09005 * 109.47176 * 299.99619 * 3 2 1 30 30 H 1.08991 * 109.47644 * 59.99853 * 4 3 2 31 31 H 1.09004 * 109.47035 * 299.99209 * 4 3 2 32 32 H 1.07998 * 126.38339 * 0.02562 * 6 5 4 33 33 H 1.07999 * 127.24829 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00006 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.47171 * 300.00083 * 12 11 9 36 36 H 1.09007 * 109.46888 * 60.00198 * 12 11 9 37 37 H 1.09010 * 109.47219 * 300.00345 * 13 12 11 38 38 H 1.08999 * 109.47020 * 60.00035 * 13 12 11 39 39 H 1.08996 * 109.47075 * 300.00122 * 14 13 12 40 40 H 1.08999 * 109.47190 * 59.99987 * 14 13 12 41 41 H 0.96996 * 120.00394 * 0.02562 * 15 14 13 42 42 H 0.96996 * 119.99924 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3355 4.2445 0.5689 8 6 4.5714 4.5259 -0.5883 9 6 4.5553 5.7951 -1.3437 10 8 5.2472 6.7269 -0.9816 11 7 3.7727 5.9206 -2.4338 12 6 3.7563 7.1796 -3.1827 13 6 2.7933 7.0571 -4.3652 14 6 2.7766 8.3718 -5.1478 15 7 1.8549 8.2541 -6.2804 16 6 1.6739 9.3139 -7.1286 17 1 2.2108 10.2362 -6.9628 18 6 0.8002 9.2027 -8.2015 19 7 0.1454 8.0789 -8.4033 20 14 0.5537 10.6480 -9.3590 21 1 1.3988 11.7861 -8.9167 22 1 0.9397 10.2503 -10.7367 23 1 -0.8739 11.0568 -9.3435 24 7 3.8773 3.4399 -0.8644 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8567 0.6438 -0.8907 31 1 3.8574 0.6436 0.8892 32 1 5.4223 2.4147 1.7428 33 1 6.0202 4.9071 1.0773 34 1 3.2204 5.1774 -2.7225 35 1 3.4280 7.9873 -2.5285 36 1 4.7589 7.3958 -3.5520 37 1 3.1220 6.2494 -5.0194 38 1 1.7907 6.8407 -3.9964 39 1 2.4482 9.1796 -4.4939 40 1 3.7793 8.5878 -5.5166 41 1 1.3724 7.4260 -6.4291 42 1 -0.4649 8.0011 -9.1533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162265084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:37 Heat of formation + Delta-G solvation = -20.203057 kcal Electronic energy + Delta-G solvation = -22494.231131 eV Core-core repulsion = 18896.609889 eV Total energy + Delta-G solvation = -3597.621242 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.68802 -40.51433 -38.99819 -37.52804 -35.93730 -34.99568 -33.76708 -31.91670 -31.30004 -30.36899 -27.62066 -26.95778 -25.43797 -24.23092 -23.02279 -22.60715 -22.38565 -20.88561 -19.27603 -18.82832 -17.96415 -17.44484 -17.16075 -17.04121 -16.86709 -16.58266 -16.40871 -15.79779 -15.40825 -15.31241 -15.22611 -14.82604 -14.68081 -14.23922 -13.96758 -13.85101 -13.31911 -13.01939 -12.84781 -12.64711 -12.59869 -12.44983 -12.34417 -12.08467 -12.04483 -11.92240 -11.80651 -11.30172 -10.96161 -10.78747 -10.39737 -10.16489 -10.00823 -9.02608 -7.97019 -5.26448 0.46967 1.16447 1.31882 1.47602 1.48452 1.58924 2.10597 2.33659 2.55934 2.77522 3.36955 3.37044 3.72469 3.76126 3.82344 3.97964 4.06460 4.11740 4.21239 4.27554 4.44025 4.44677 4.48485 4.61743 4.66140 4.68952 4.72008 4.74332 4.77257 4.83878 4.87162 5.24579 5.29797 5.30176 5.38268 5.48856 5.80468 6.00206 6.25712 6.38967 6.85271 7.11384 7.31952 8.06379 8.30330 9.26872 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.002408 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.874965 B =11623.109844 C =13327.350161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.277 5.277 6 C 0.010 3.990 7 C -0.200 4.200 8 C -0.041 4.041 9 C 0.599 3.401 10 O -0.572 6.572 11 N -0.707 5.707 12 C 0.133 3.867 13 C -0.119 4.119 14 C 0.153 3.847 15 N -0.748 5.748 16 C -0.248 4.248 17 H 0.076 0.924 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.976 3.024 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.292 1.292 24 N -0.277 5.277 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.149 0.851 32 H 0.232 0.768 33 H 0.167 0.833 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.375 0.625 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.683 -19.910 24.145 32.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.027 4.027 4 C 0.003 3.997 5 N -0.066 5.066 6 C -0.132 4.132 7 C -0.228 4.228 8 C -0.200 4.200 9 C 0.385 3.615 10 O -0.450 6.450 11 N -0.358 5.358 12 C 0.009 3.991 13 C -0.157 4.157 14 C 0.026 3.974 15 N -0.391 5.391 16 C -0.379 4.379 17 H 0.094 0.906 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.219 1.219 24 N -0.114 5.114 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.167 0.833 32 H 0.248 0.752 33 H 0.185 0.815 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.207 0.793 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.480 -19.782 23.575 31.450 hybrid contribution -0.459 0.791 -0.620 1.105 sum 6.021 -18.990 22.955 30.395 Atomic orbital electron populations 1.22963 0.78809 1.04292 1.00854 1.87741 1.21809 1.26793 1.95674 1.22593 0.92865 0.85477 1.01729 1.21976 0.92299 0.77140 1.08312 1.45646 1.30814 1.11761 1.18422 1.23542 0.95862 0.95579 0.98250 1.22037 1.05101 0.97576 0.98113 1.21839 1.03630 0.93684 1.00811 1.17223 0.79092 0.85435 0.79786 1.90765 1.44044 1.40795 1.69374 1.45834 1.45010 1.17177 1.27812 1.21193 0.99951 0.85614 0.92376 1.21702 0.99715 0.98344 0.95918 1.20674 0.92806 0.95606 0.88301 1.42567 1.51345 1.14940 1.30232 1.19699 1.19590 0.93875 1.04768 0.90579 1.25612 1.00027 1.00130 1.01139 1.69821 1.32634 1.27063 1.32523 0.85036 0.77259 0.78868 0.78368 1.19068 1.21863 1.21857 1.73446 1.23052 0.98017 1.16889 0.87693 0.92977 0.93754 0.92212 0.92901 0.87387 0.83271 0.75188 0.81548 0.75000 0.91309 0.91352 0.90987 0.90954 0.95716 0.95742 0.79302 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.12 10.70 -148.98 -1.59 -6.72 16 3 C 0.05 0.59 6.04 71.98 0.43 1.02 16 4 C 0.12 0.99 6.77 86.38 0.58 1.57 16 5 N -0.28 -3.93 3.41 -347.95 -1.19 -5.11 16 6 C 0.01 0.11 11.40 83.54 0.95 1.07 16 7 C -0.20 -3.81 10.81 22.41 0.24 -3.56 16 8 C -0.04 -1.00 7.13 42.45 0.30 -0.70 16 9 C 0.60 17.89 7.83 86.75 0.68 18.57 16 10 O -0.57 -20.60 16.93 -3.96 -0.07 -20.67 16 11 N -0.71 -19.21 5.55 -466.10 -2.59 -21.80 16 12 C 0.13 3.84 5.67 86.38 0.49 4.33 16 13 C -0.12 -3.77 5.44 30.59 0.17 -3.61 16 14 C 0.15 6.22 6.26 86.38 0.54 6.76 16 15 N -0.75 -38.96 5.60 -343.45 -1.92 -40.89 16 16 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 19 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 20 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 N -0.28 -5.93 11.36 -48.18 -0.55 -6.48 16 25 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 27 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.79 8.08 -2.38 -0.02 0.77 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.15 0.16 8.04 -2.38 -0.02 0.14 16 32 H 0.23 0.22 8.06 -2.91 -0.02 0.20 16 33 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 34 H 0.41 9.98 8.20 -92.71 -0.76 9.22 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.38 20.49 7.67 -92.71 -0.71 19.78 16 42 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -76.73 365.14 0.91 -75.82 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.44 Total: 27.19 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.95 Total: 9.59 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -5.96 Total: -133.99 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.66 Total: -27.38 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -76.73 0.91 -75.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162265084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.614 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds