Wall clock time and date at job start Tue Mar 31 2020 03:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00295 * 2 1 4 4 H 1.48501 * 109.47387 * 271.18899 * 3 2 1 5 5 H 1.48496 * 109.47298 * 31.19048 * 3 2 1 6 6 H 1.48501 * 109.47387 * 151.18831 * 3 2 1 7 7 C 1.38811 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00136 * 3.49583 * 7 2 1 9 9 N 1.36940 * 120.00157 * 183.50010 * 7 2 1 10 10 C 1.46499 * 120.00470 * 184.91149 * 9 7 2 11 11 C 1.52998 * 109.47471 * 185.11696 * 10 9 7 12 12 C 1.52996 * 115.54883 * 65.20120 * 11 10 9 13 13 C 1.52996 * 109.47149 * 40.16950 * 12 11 10 14 14 N 1.46501 * 109.47459 * 178.78966 * 13 12 11 15 15 C 1.34775 * 120.00590 * 184.87953 * 14 13 12 16 16 O 1.21281 * 119.99786 * 354.32587 * 15 14 13 17 17 C 1.50696 * 120.00189 * 174.33127 * 15 14 13 18 18 O 1.42905 * 109.46742 * 179.97438 * 17 15 14 19 19 C 1.42909 * 113.99573 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.46658 * 180.02562 * 19 18 17 21 21 C 1.53006 * 117.49567 * 243.62106 * 20 19 18 22 22 C 1.52996 * 60.00099 * 252.51369 * 21 20 19 23 23 C 1.52996 * 117.51817 * 210.90354 * 11 10 9 24 24 C 1.52997 * 117.49646 * 279.53572 * 11 10 9 25 25 H 0.97001 * 119.99972 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99662 * 4.90702 * 9 7 2 27 27 H 1.08998 * 109.46821 * 65.11482 * 10 9 7 28 28 H 1.09003 * 109.47101 * 305.11883 * 10 9 7 29 29 H 1.09007 * 109.47525 * 280.16946 * 12 11 10 30 30 H 1.09003 * 109.46913 * 160.16968 * 12 11 10 31 31 H 1.09002 * 109.47285 * 58.79138 * 13 12 11 32 32 H 1.09003 * 109.47238 * 298.78795 * 13 12 11 33 33 H 0.97001 * 119.99956 * 4.87542 * 14 13 12 34 34 H 1.09000 * 109.47220 * 60.00188 * 17 15 14 35 35 H 1.08999 * 109.47299 * 299.99362 * 17 15 14 36 36 H 1.09001 * 109.47022 * 60.00443 * 19 18 17 37 37 H 1.08996 * 109.47056 * 300.00352 * 19 18 17 38 38 H 1.08995 * 115.55540 * 29.32827 * 20 19 18 39 39 H 1.08997 * 117.49836 * 0.02562 * 21 20 19 40 40 H 1.09007 * 117.49659 * 145.02553 * 21 20 19 41 41 H 1.08998 * 117.49915 * 252.51424 * 22 21 20 42 42 H 1.08998 * 117.50336 * 107.48936 * 22 21 20 43 43 H 1.08999 * 117.49863 * 214.96930 * 23 11 10 44 44 H 1.09004 * 117.49864 * 359.97438 * 23 11 10 45 45 H 1.08996 * 117.50263 * 359.97296 * 24 11 10 46 46 H 1.09001 * 117.50300 * 144.99617 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4726 2.0609 -1.3998 5 1 1.4606 2.6452 0.7250 6 1 3.5601 1.4329 0.6747 7 6 2.0101 -1.2022 0.0005 8 1 1.4716 -2.1366 -0.0561 9 7 3.3776 -1.2034 0.0729 10 6 4.1159 -2.4642 -0.0348 11 6 5.6048 -2.2054 0.2041 12 6 5.9747 -1.7304 1.6106 13 6 5.1468 -2.4987 2.6426 14 7 5.5215 -2.0645 3.9906 15 6 4.9910 -2.6766 5.0678 16 8 4.1275 -3.5160 4.9241 17 6 5.4707 -2.3181 6.4506 18 8 4.7619 -3.0961 7.4172 19 6 5.1437 -2.8322 8.7689 20 6 4.3256 -3.7167 9.7118 21 6 3.3808 -3.0191 10.6926 22 6 4.6694 -3.6680 11.2019 23 6 6.6044 -3.1073 -0.5227 24 6 6.4225 -1.6541 -0.9657 25 1 -0.4850 0.8401 -0.0004 26 1 3.8575 -0.3693 0.1955 27 1 3.9751 -2.8836 -1.0309 28 1 3.7450 -3.1672 0.7111 29 1 5.7678 -0.6639 1.7001 30 1 7.0349 -1.9110 1.7879 31 1 5.3374 -3.5669 2.5389 32 1 4.0874 -2.3011 2.4786 33 1 6.1516 -1.3363 4.1080 34 1 5.2906 -1.2589 6.6344 35 1 6.5381 -2.5243 6.5298 36 1 4.9575 -1.7835 9.0009 37 1 6.2042 -3.0497 8.8959 38 1 4.0066 -4.6741 9.2999 39 1 3.3419 -1.9302 10.6657 40 1 2.4400 -3.5177 10.9259 41 1 4.5763 -4.5934 11.7703 42 1 5.4784 -3.0060 11.5104 43 1 7.5257 -3.3621 0.0012 44 1 6.2014 -3.8855 -1.1709 45 1 5.8998 -1.4761 -1.9054 46 1 7.2240 -0.9529 -0.7332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163540971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:02 Heat of formation + Delta-G solvation = -46.756394 kcal Electronic energy + Delta-G solvation = -23476.507649 eV Core-core repulsion = 19981.275311 eV Total energy + Delta-G solvation = -3495.232338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90410 -39.68741 -39.10010 -37.34736 -36.08952 -35.87138 -33.24232 -31.79880 -29.52898 -28.05755 -27.12141 -24.35104 -24.21128 -23.26309 -23.04726 -21.96839 -21.51774 -20.41748 -19.22934 -18.28428 -17.88818 -17.41635 -16.96156 -16.62917 -16.44491 -16.35314 -15.95724 -15.48151 -15.25667 -15.10585 -14.82166 -14.67562 -14.26091 -14.02062 -13.48909 -13.46415 -13.38473 -13.03651 -12.86565 -12.59191 -12.40075 -12.22649 -12.18734 -12.09074 -11.91024 -11.81761 -11.40506 -11.27395 -11.12152 -11.01268 -10.84057 -10.56748 -10.51850 -10.11286 -9.28467 -8.03578 -5.36927 1.33571 1.41047 1.47800 1.56139 1.79116 2.47686 2.73736 2.85355 3.05180 3.26885 3.68306 3.71521 3.78833 3.90161 3.94345 3.94950 4.07259 4.12060 4.12972 4.20269 4.27500 4.34487 4.41169 4.48874 4.51132 4.62856 4.69270 4.76508 4.86424 4.93948 4.99648 5.00083 5.09660 5.14439 5.20295 5.23422 5.23661 5.30804 5.36698 5.44109 5.74326 6.09614 6.20536 6.57342 7.07955 7.25396 7.83336 8.06563 9.18733 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.003098 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.730546 B = 9035.777470 C =10412.252136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.245 1.245 7 C -0.235 4.235 8 H 0.045 0.955 9 N -0.746 5.746 10 C 0.186 3.814 11 C -0.150 4.150 12 C -0.071 4.071 13 C 0.125 3.875 14 N -0.711 5.711 15 C 0.500 3.500 16 O -0.582 6.582 17 C 0.051 3.949 18 O -0.402 6.402 19 C 0.090 3.910 20 C -0.179 4.179 21 C -0.186 4.186 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.163 4.163 25 H 0.258 0.742 26 H 0.369 0.631 27 H 0.016 0.984 28 H 0.018 0.982 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.419 0.581 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.744 -1.796 17.239 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.260 4.260 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.169 1.169 7 C -0.366 4.366 8 H 0.063 0.937 9 N -0.392 5.392 10 C 0.060 3.940 11 C -0.151 4.151 12 C -0.109 4.109 13 C 0.002 3.998 14 N -0.365 5.365 15 C 0.287 3.713 16 O -0.461 6.461 17 C -0.028 4.028 18 O -0.321 6.321 19 C 0.015 3.985 20 C -0.197 4.197 21 C -0.223 4.223 22 C -0.189 4.189 23 C -0.186 4.186 24 C -0.200 4.200 25 H 0.066 0.934 26 H 0.203 0.797 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.257 0.743 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 22.807 -2.654 17.064 28.608 hybrid contribution -0.488 1.125 -0.264 1.255 sum 22.319 -1.529 16.800 27.977 Atomic orbital electron populations 1.69921 1.07437 1.26754 1.59710 1.25622 0.96193 1.01673 1.02489 0.85274 0.78695 0.78859 0.78102 1.20392 1.22338 1.16898 1.19001 0.83175 0.93176 1.41228 0.93690 1.42558 1.02196 1.05292 1.89185 1.20273 0.89055 0.87568 0.97068 1.21477 0.91703 1.07822 0.94081 1.21129 1.00337 0.99475 0.89940 1.21247 0.98934 0.98820 0.80847 1.45714 1.47611 1.38205 1.05018 1.21131 0.81312 0.81091 0.87799 1.90742 1.32416 1.35577 1.87410 1.22320 0.98235 0.97489 0.84754 1.87995 1.64086 1.64004 1.16042 1.22250 0.98472 0.98365 0.79461 1.22157 1.04564 1.01257 0.91727 1.23168 0.95143 1.00556 1.03401 1.23070 0.98995 1.03544 0.93253 1.23146 0.99783 0.93309 1.02336 1.23045 1.02031 0.97615 0.97330 0.93356 0.79696 0.96619 0.96351 0.91184 0.87586 0.92279 0.94518 0.74287 0.87492 0.86239 0.91520 0.90522 0.88917 0.87973 0.88860 0.87626 0.86827 0.86007 0.89077 0.89977 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.96 13.97 21.65 0.30 -65.66 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.96 46.27 27.90 68.60 1.91 48.18 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.24 -10.20 6.30 99.48 0.63 -9.58 16 7 C -0.23 -14.09 10.47 84.03 0.88 -13.21 16 8 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 9 N -0.75 -35.78 5.29 -343.46 -1.82 -37.59 16 10 C 0.19 7.42 5.32 86.38 0.46 7.88 16 11 C -0.15 -4.12 1.83 -52.19 -0.10 -4.21 16 12 C -0.07 -1.65 5.37 30.59 0.16 -1.48 16 13 C 0.13 3.74 4.80 86.38 0.41 4.15 16 14 N -0.71 -16.75 5.55 -463.06 -2.57 -19.32 16 15 C 0.50 14.63 7.90 87.66 0.69 15.32 16 16 O -0.58 -24.97 16.51 16.01 0.26 -24.71 16 17 C 0.05 0.96 6.42 71.23 0.46 1.42 16 18 O -0.40 -10.33 9.88 -129.94 -1.28 -11.62 16 19 C 0.09 1.50 6.22 71.98 0.45 1.95 16 20 C -0.18 -3.19 6.06 -10.79 -0.07 -3.26 16 21 C -0.19 -2.84 10.18 30.59 0.31 -2.53 16 22 C -0.15 -1.79 10.25 30.59 0.31 -1.47 16 23 C -0.15 -3.08 9.87 30.59 0.30 -2.78 16 24 C -0.16 -3.74 9.97 30.59 0.31 -3.44 16 25 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 26 H 0.37 16.51 5.46 -92.70 -0.51 16.00 16 27 H 0.02 0.65 8.09 -2.39 -0.02 0.63 16 28 H 0.02 0.81 6.69 -2.39 -0.02 0.79 16 29 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.11 1.60 7.95 -2.39 -0.02 1.58 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.50 6.85 -2.39 -0.02 1.48 16 33 H 0.42 5.87 8.48 -92.71 -0.79 5.09 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 0.88 7.88 -2.39 -0.02 0.87 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.10 1.40 8.03 -2.39 -0.02 1.38 16 40 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.12 1.84 8.09 -2.39 -0.02 1.82 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -86.47 381.34 1.46 -85.01 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.41 Total: 31.12 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.05 Total: -5.40 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -4.08 Total: -122.58 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.02 Total: -36.33 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.91 Total: 48.18 kcal Total: -86.47 1.46 -85.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163540971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.257 kcal (2) G-P(sol) polarization free energy of solvation -86.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds