Wall clock time and date at job start Tue Mar 31 2020 03:18:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09004 * 109.46958 * 2 1
4 4 C 1.52989 * 109.47215 * 240.00065 * 2 1 3
5 5 C 1.53008 * 109.47111 * 174.99993 * 4 2 1
6 6 C 1.53003 * 109.46954 * 179.97438 * 5 4 2
7 7 C 1.52996 * 109.46708 * 179.97438 * 6 5 4
8 8 N 1.46505 * 109.47006 * 179.97438 * 7 6 5
9 9 C 1.36933 * 119.99900 * 179.97438 * 8 7 6
10 10 H 1.07996 * 120.00051 * 0.02562 * 9 8 7
11 11 C 1.38814 * 120.00090 * 180.02562 * 9 8 7
12 12 N 1.31619 * 119.99818 * 0.02562 * 11 9 8
13 13 Si 1.86799 * 120.00298 * 180.02562 * 11 9 8
14 14 H 1.48503 * 109.46854 * 59.99921 * 13 11 9
15 15 H 1.48500 * 109.47124 * 179.97438 * 13 11 9
16 16 H 1.48492 * 109.47199 * 300.00269 * 13 11 9
17 17 N 1.46500 * 109.47105 * 119.99512 * 2 1 3
18 18 C 1.34781 * 120.00115 * 275.00349 * 17 2 1
19 19 O 1.21284 * 120.00039 * 0.02562 * 18 17 2
20 20 C 1.50695 * 119.99873 * 180.02562 * 18 17 2
21 21 N 1.46498 * 109.47144 * 179.97438 * 20 18 17
22 22 C 1.34604 * 126.43686 * 124.99851 * 21 20 18
23 23 N 1.31071 * 106.67536 * 179.97438 * 22 21 20
24 24 N 1.28838 * 107.99475 * 0.02562 * 23 22 21
25 25 N 1.28738 * 109.39735 * 359.97438 * 24 23 22
26 26 H 1.09007 * 109.47159 * 180.02562 * 1 2 3
27 27 H 1.09005 * 109.47360 * 299.99895 * 1 2 3
28 28 H 1.09004 * 109.47536 * 60.00152 * 1 2 3
29 29 H 1.09007 * 109.47375 * 294.99500 * 4 2 1
30 30 H 1.09002 * 109.47541 * 54.99939 * 4 2 1
31 31 H 1.08998 * 109.46533 * 299.99800 * 5 4 2
32 32 H 1.09002 * 109.46963 * 59.99591 * 5 4 2
33 33 H 1.09000 * 109.46846 * 299.99280 * 6 5 4
34 34 H 1.08996 * 109.47251 * 59.99754 * 6 5 4
35 35 H 1.08998 * 109.47393 * 299.99490 * 7 6 5
36 36 H 1.09004 * 109.47698 * 60.00066 * 7 6 5
37 37 H 0.96998 * 119.99739 * 359.97438 * 8 7 6
38 38 H 0.96997 * 120.00254 * 180.02562 * 12 11 9
39 39 H 0.97000 * 120.00109 * 95.00320 * 17 2 1
40 40 H 1.09004 * 109.47418 * 59.99565 * 20 18 17
41 41 H 1.09005 * 109.47395 * 299.99974 * 20 18 17
42 42 H 1.07999 * 126.66312 * 359.71827 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5649 -0.6132 -1.3136
6 6 4.0749 -1.3350 -2.5625
7 6 5.5996 -1.2264 -2.6272
8 7 6.0881 -1.9181 -3.8228
9 6 7.4301 -1.9537 -4.0928
10 1 8.1284 -1.4723 -3.4243
11 6 7.8930 -2.6086 -5.2259
12 7 7.0419 -3.1948 -6.0409
13 14 9.7237 -2.6578 -5.5940
14 1 10.4354 -3.3282 -4.4762
15 1 9.9556 -3.4128 -6.8515
16 1 10.2354 -1.2721 -5.7463
17 7 2.0183 -0.6905 1.1962
18 6 2.1470 -0.0181 2.3572
19 8 1.8580 1.1586 2.4117
20 6 2.6498 -0.7283 3.5875
21 7 2.6995 0.2132 4.7088
22 6 2.1059 0.0611 5.9073
23 7 2.4022 1.1261 6.6116
24 7 3.1388 1.8925 5.8836
25 7 3.3206 1.3438 4.7332
26 1 -0.3634 -1.0277 0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 1.7517 -1.7715 -1.2055
30 1 1.6054 -0.2617 -2.1369
31 1 3.8531 0.4371 -1.3572
32 1 3.9994 -1.0727 -0.4258
33 1 3.7866 -2.3853 -2.5183
34 1 3.6403 -0.8759 -3.4504
35 1 5.8876 -0.1761 -2.6716
36 1 6.0347 -1.6853 -1.7393
37 1 5.4610 -2.3508 -4.4230
38 1 7.3653 -3.6528 -6.8325
39 1 2.2490 -1.6317 1.1528
40 1 3.6492 -1.1201 3.3980
41 1 1.9777 -1.5507 3.8326
42 1 1.4995 -0.7741 6.2253
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169044428.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:48
Heat of formation + Delta-G solvation = 82.555024 kcal
Electronic energy + Delta-G solvation = -22888.811551 eV
Core-core repulsion = 19327.938984 eV
Total energy + Delta-G solvation = -3560.872566 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.170 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-44.49048 -40.44597 -37.36679 -35.80804 -35.34505 -33.46016 -32.77658 -31.94609
-30.51188 -29.22365 -27.55442 -24.49416 -24.17424 -23.88952 -22.36804 -21.38805
-21.00585 -20.75365 -18.32662 -18.26234 -17.06071 -16.89566 -16.66870 -16.16087
-15.88024 -15.08967 -14.77075 -14.45841 -14.18569 -13.93928 -13.56057 -13.26420
-13.16739 -13.05781 -12.87032 -12.54105 -12.43854 -11.88779 -11.60576 -11.55655
-11.45460 -11.37097 -11.09785 -10.83518 -10.79628 -10.75364 -10.50826 -10.40487
-10.32730 -10.05753 -9.71823 -9.53986 -8.88494 -6.93967 -5.78363 -3.07016
0.88270 1.40266 1.93270 1.97330 2.54388 3.42751 3.46945 3.48162
3.64226 3.81104 3.94046 4.18562 4.36681 4.42447 4.59919 4.71722
4.82384 5.04911 5.10884 5.23560 5.30085 5.32159 5.43902 5.51891
5.56126 5.64270 5.66275 5.74719 5.81018 5.96827 6.00310 6.20815
6.22172 6.32023 6.39367 6.83548 6.87447 6.88294 7.58021 7.67771
8.29943 8.41046 9.51746 10.10407 10.44862 11.44615
Molecular weight = 296.17amu
Principal moments of inertia in cm(-1)
A = 0.019195 B = 0.002330 C = 0.002131
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1458.353713 B =12016.278539 C =13137.201511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.142 3.858
3 H 0.092 0.908
4 C -0.127 4.127
5 C -0.115 4.115
6 C -0.126 4.126
7 C 0.152 3.848
8 N -0.735 5.735
9 C -0.240 4.240
10 H 0.069 0.931
11 C -0.016 4.016
12 N -0.935 5.935
13 Si 0.908 3.092
14 H -0.286 1.286
15 H -0.291 1.291
16 H -0.286 1.286
17 N -0.713 5.713
18 C 0.502 3.498
19 O -0.510 6.510
20 C 0.094 3.906
21 N -0.301 5.301
22 C 0.158 3.842
23 N -0.307 5.307
24 N -0.078 5.078
25 N -0.060 5.060
26 H 0.058 0.942
27 H 0.057 0.943
28 H 0.069 0.931
29 H 0.070 0.930
30 H 0.082 0.918
31 H 0.063 0.937
32 H 0.059 0.941
33 H 0.060 0.940
34 H 0.061 0.939
35 H 0.017 0.983
36 H 0.015 0.985
37 H 0.383 0.617
38 H 0.256 0.744
39 H 0.404 0.596
40 H 0.138 0.862
41 H 0.144 0.856
42 H 0.235 0.765
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.924 -0.165 19.836 26.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.038 3.962
3 H 0.110 0.890
4 C -0.165 4.165
5 C -0.153 4.153
6 C -0.164 4.164
7 C 0.025 3.975
8 N -0.379 5.379
9 C -0.371 4.371
10 H 0.087 0.913
11 C -0.211 4.211
12 N -0.584 5.584
13 Si 0.739 3.261
14 H -0.213 1.213
15 H -0.216 1.216
16 H -0.212 1.212
17 N -0.366 5.366
18 C 0.284 3.716
19 O -0.384 6.384
20 C -0.032 4.032
21 N -0.103 5.103
22 C -0.140 4.140
23 N -0.154 5.154
24 N -0.072 5.072
25 N -0.046 5.046
26 H 0.077 0.923
27 H 0.076 0.924
28 H 0.088 0.912
29 H 0.088 0.912
30 H 0.101 0.899
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.079 0.921
34 H 0.080 0.920
35 H 0.035 0.965
36 H 0.033 0.967
37 H 0.216 0.784
38 H 0.065 0.935
39 H 0.239 0.761
40 H 0.156 0.844
41 H 0.161 0.839
42 H 0.251 0.749
Dipole moment (debyes) X Y Z Total
from point charges -16.347 2.000 20.096 25.982
hybrid contribution 0.481 -1.776 -0.830 2.018
sum -15.867 0.224 19.266 24.959
Atomic orbital electron populations
1.22179 0.95070 1.02205 1.02713 1.21135 0.93865 0.97877 0.83298
0.89018 1.21955 0.97009 1.00959 0.96567 1.21534 0.93777 1.01273
0.98696 1.21726 0.97335 1.00219 0.97082 1.20646 0.90927 0.95377
0.90587 1.42378 1.05354 1.64879 1.25292 1.19203 0.83909 1.28489
1.05541 0.91279 1.24755 0.97778 1.00924 0.97674 1.69648 1.32898
1.40661 1.15175 0.86249 0.85041 0.77523 0.77281 1.21268 1.21647
1.21226 1.45974 1.67094 1.14270 1.09299 1.20113 0.79143 0.87772
0.84562 1.90864 1.48220 1.15027 1.84271 1.22034 1.07393 0.90207
0.83607 1.48162 1.33849 1.15365 1.12918 1.27742 1.01232 1.01981
0.83083 1.74995 1.12887 1.01439 1.26101 1.78706 1.12213 1.20727
0.95602 1.79064 1.14620 0.93752 1.17205 0.92303 0.92388 0.91190
0.91166 0.89931 0.91864 0.92191 0.92103 0.92001 0.96549 0.96683
0.78351 0.93467 0.76095 0.84390 0.83861 0.74872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.10 9.48 37.16 0.35 -0.75 16
2 C 0.14 1.06 2.57 -67.94 -0.17 0.88 16
3 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16
4 C -0.13 -0.98 4.75 -26.73 -0.13 -1.11 16
5 C -0.11 -1.21 5.10 -26.73 -0.14 -1.35 16
6 C -0.13 -1.84 5.33 -26.73 -0.14 -1.98 16
7 C 0.15 3.00 6.26 -4.04 -0.03 2.98 16
8 N -0.74 -18.74 5.60 -59.91 -0.34 -19.07 16
9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16
10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16
12 N -0.94 -28.30 13.06 55.49 0.72 -27.57 16
13 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16
14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
15 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16
16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
17 N -0.71 -3.95 4.53 -53.81 -0.24 -4.20 16
18 C 0.50 3.69 7.81 -10.99 -0.09 3.60 16
19 O -0.51 -6.51 15.36 5.55 0.09 -6.42 16
20 C 0.09 0.32 6.96 -5.20 -0.04 0.28 16
21 N -0.30 -2.36 3.19 -63.74 -0.20 -2.57 16
22 C 0.16 1.03 12.79 -90.38 -1.16 -0.12 16
23 N -0.31 -3.48 12.36 29.59 0.37 -3.12 16
24 N -0.08 -1.09 13.43 60.35 0.81 -0.28 16
25 N -0.06 -0.76 12.29 60.35 0.74 -0.02 16
26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16
27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16
30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16
33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16
34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16
36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
37 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16
38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
39 H 0.40 1.05 8.60 -40.82 -0.35 0.70 16
40 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16
41 H 0.14 -0.25 8.08 -51.93 -0.42 -0.67 16
42 H 0.24 0.08 8.06 -52.49 -0.42 -0.34 16
LS Contribution 360.70 15.07 5.44 5.44
Total: -1.00 -39.44 360.70 -5.92 -45.36
By element:
Atomic # 1 Polarization: 6.59 SS G_CDS: -6.50 Total: 0.10 kcal
Atomic # 6 Polarization: -3.28 SS G_CDS: -1.78 Total: -5.06 kcal
Atomic # 7 Polarization: -58.68 SS G_CDS: 1.86 Total: -56.82 kcal
Atomic # 8 Polarization: -6.51 SS G_CDS: 0.09 Total: -6.42 kcal
Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -39.44 -5.92 -45.36 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169044428.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.914 kcal
(2) G-P(sol) polarization free energy of solvation -39.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.555 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds