Wall clock time and date at job start Tue Mar 31 2020 03:18:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09004 * 109.46958 * 2 1
4 4 C 1.52989 * 109.47215 * 240.00065 * 2 1 3
5 5 C 1.53008 * 109.47111 * 174.99993 * 4 2 1
6 6 C 1.53003 * 109.46954 * 179.97438 * 5 4 2
7 7 C 1.52996 * 109.46708 * 179.97438 * 6 5 4
8 8 N 1.46505 * 109.47006 * 179.97438 * 7 6 5
9 9 C 1.36933 * 119.99900 * 179.97438 * 8 7 6
10 10 H 1.07996 * 120.00051 * 0.02562 * 9 8 7
11 11 C 1.38814 * 120.00090 * 180.02562 * 9 8 7
12 12 N 1.31619 * 119.99818 * 0.02562 * 11 9 8
13 13 Si 1.86799 * 120.00298 * 180.02562 * 11 9 8
14 14 H 1.48503 * 109.46854 * 59.99921 * 13 11 9
15 15 H 1.48500 * 109.47124 * 179.97438 * 13 11 9
16 16 H 1.48492 * 109.47199 * 300.00269 * 13 11 9
17 17 N 1.46500 * 109.47105 * 119.99512 * 2 1 3
18 18 C 1.34781 * 120.00115 * 275.00349 * 17 2 1
19 19 O 1.21284 * 120.00039 * 0.02562 * 18 17 2
20 20 C 1.50695 * 119.99873 * 180.02562 * 18 17 2
21 21 N 1.46498 * 109.47144 * 179.97438 * 20 18 17
22 22 C 1.34604 * 126.43686 * 124.99851 * 21 20 18
23 23 N 1.31071 * 106.67536 * 179.97438 * 22 21 20
24 24 N 1.28838 * 107.99475 * 0.02562 * 23 22 21
25 25 N 1.28738 * 109.39735 * 359.97438 * 24 23 22
26 26 H 1.09007 * 109.47159 * 180.02562 * 1 2 3
27 27 H 1.09005 * 109.47360 * 299.99895 * 1 2 3
28 28 H 1.09004 * 109.47536 * 60.00152 * 1 2 3
29 29 H 1.09007 * 109.47375 * 294.99500 * 4 2 1
30 30 H 1.09002 * 109.47541 * 54.99939 * 4 2 1
31 31 H 1.08998 * 109.46533 * 299.99800 * 5 4 2
32 32 H 1.09002 * 109.46963 * 59.99591 * 5 4 2
33 33 H 1.09000 * 109.46846 * 299.99280 * 6 5 4
34 34 H 1.08996 * 109.47251 * 59.99754 * 6 5 4
35 35 H 1.08998 * 109.47393 * 299.99490 * 7 6 5
36 36 H 1.09004 * 109.47698 * 60.00066 * 7 6 5
37 37 H 0.96998 * 119.99739 * 359.97438 * 8 7 6
38 38 H 0.96997 * 120.00254 * 180.02562 * 12 11 9
39 39 H 0.97000 * 120.00109 * 95.00320 * 17 2 1
40 40 H 1.09004 * 109.47418 * 59.99565 * 20 18 17
41 41 H 1.09005 * 109.47395 * 299.99974 * 20 18 17
42 42 H 1.07999 * 126.66312 * 359.71827 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5649 -0.6132 -1.3136
6 6 4.0749 -1.3350 -2.5625
7 6 5.5996 -1.2264 -2.6272
8 7 6.0881 -1.9181 -3.8228
9 6 7.4301 -1.9537 -4.0928
10 1 8.1284 -1.4723 -3.4243
11 6 7.8930 -2.6086 -5.2259
12 7 7.0419 -3.1948 -6.0409
13 14 9.7237 -2.6578 -5.5940
14 1 10.4354 -3.3282 -4.4762
15 1 9.9556 -3.4128 -6.8515
16 1 10.2354 -1.2721 -5.7463
17 7 2.0183 -0.6905 1.1962
18 6 2.1470 -0.0181 2.3572
19 8 1.8580 1.1586 2.4117
20 6 2.6498 -0.7283 3.5875
21 7 2.6995 0.2132 4.7088
22 6 2.1059 0.0611 5.9073
23 7 2.4022 1.1261 6.6116
24 7 3.1388 1.8925 5.8836
25 7 3.3206 1.3438 4.7332
26 1 -0.3634 -1.0277 0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 1.7517 -1.7715 -1.2055
30 1 1.6054 -0.2617 -2.1369
31 1 3.8531 0.4371 -1.3572
32 1 3.9994 -1.0727 -0.4258
33 1 3.7866 -2.3853 -2.5183
34 1 3.6403 -0.8759 -3.4504
35 1 5.8876 -0.1761 -2.6716
36 1 6.0347 -1.6853 -1.7393
37 1 5.4610 -2.3508 -4.4230
38 1 7.3653 -3.6528 -6.8325
39 1 2.2490 -1.6317 1.1528
40 1 3.6492 -1.1201 3.3980
41 1 1.9777 -1.5507 3.8326
42 1 1.4995 -0.7741 6.2253
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001169044428.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:48
Heat of formation + Delta-G solvation = 52.369599 kcal
Electronic energy + Delta-G solvation = -22890.120489 eV
Core-core repulsion = 19327.938984 eV
Total energy + Delta-G solvation = -3562.181505 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.170 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-45.15338 -41.03470 -38.17546 -36.94070 -36.32280 -34.81573 -33.50011 -33.08804
-31.89056 -29.72481 -28.81506 -25.95955 -24.91228 -24.65983 -23.66319 -22.21075
-21.98044 -21.58063 -19.14093 -18.87567 -18.74641 -17.52842 -17.23439 -16.73327
-16.69212 -16.47008 -16.09208 -15.42458 -15.30694 -14.98327 -14.61404 -14.51533
-14.14440 -14.04840 -13.59044 -13.23830 -13.12858 -13.03271 -12.88255 -12.84196
-12.45253 -12.28054 -12.20756 -12.20254 -12.11201 -11.88562 -11.81420 -11.51317
-11.43679 -11.39792 -10.95255 -10.93459 -10.15447 -9.01871 -7.97254 -5.26313
0.29063 1.00134 1.26685 1.43710 1.46355 1.49405 1.55717 2.08679
2.54843 3.29869 3.35965 3.49928 3.57235 3.66467 4.01665 4.04120
4.06707 4.06904 4.14590 4.35496 4.40122 4.41732 4.60659 4.65269
4.73261 4.77864 4.88323 4.92737 4.99437 5.03411 5.10793 5.22757
5.28105 5.32155 5.42779 5.45730 5.53932 5.56055 6.25885 6.44722
7.14271 7.31621 7.59123 8.08753 8.31681 9.26055
Molecular weight = 296.17amu
Principal moments of inertia in cm(-1)
A = 0.019195 B = 0.002330 C = 0.002131
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1458.353713 B =12016.278539 C =13137.201511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.146 3.854
3 H 0.060 0.940
4 C -0.116 4.116
5 C -0.106 4.106
6 C -0.113 4.113
7 C 0.147 3.853
8 N -0.749 5.749
9 C -0.251 4.251
10 H 0.072 0.928
11 C -0.076 4.076
12 N -0.969 5.969
13 Si 0.975 3.025
14 H -0.276 1.276
15 H -0.293 1.293
16 H -0.280 1.280
17 N -0.699 5.699
18 C 0.497 3.503
19 O -0.573 6.573
20 C 0.091 3.909
21 N -0.298 5.298
22 C 0.184 3.816
23 N -0.349 5.349
24 N -0.122 5.122
25 N -0.099 5.099
26 H 0.078 0.922
27 H 0.040 0.960
28 H 0.070 0.930
29 H 0.092 0.908
30 H 0.081 0.919
31 H 0.048 0.952
32 H 0.073 0.927
33 H 0.067 0.933
34 H 0.053 0.947
35 H 0.009 0.991
36 H 0.021 0.979
37 H 0.374 0.626
38 H 0.253 0.747
39 H 0.423 0.577
40 H 0.164 0.836
41 H 0.207 0.793
42 H 0.297 0.703
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.615 -2.570 20.859 27.422
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.042 3.958
3 H 0.079 0.921
4 C -0.154 4.154
5 C -0.144 4.144
6 C -0.150 4.150
7 C 0.021 3.979
8 N -0.392 5.392
9 C -0.383 4.383
10 H 0.090 0.910
11 C -0.268 4.268
12 N -0.619 5.619
13 Si 0.803 3.197
14 H -0.202 1.202
15 H -0.219 1.219
16 H -0.206 1.206
17 N -0.353 5.353
18 C 0.282 3.718
19 O -0.451 6.451
20 C -0.032 4.032
21 N -0.101 5.101
22 C -0.114 4.114
23 N -0.196 5.196
24 N -0.116 5.116
25 N -0.086 5.086
26 H 0.097 0.903
27 H 0.059 0.941
28 H 0.089 0.911
29 H 0.111 0.889
30 H 0.099 0.901
31 H 0.067 0.933
32 H 0.092 0.908
33 H 0.086 0.914
34 H 0.072 0.928
35 H 0.027 0.973
36 H 0.039 0.961
37 H 0.206 0.794
38 H 0.061 0.939
39 H 0.261 0.739
40 H 0.181 0.819
41 H 0.224 0.776
42 H 0.312 0.688
Dipole moment (debyes) X Y Z Total
from point charges -17.033 -0.434 21.137 27.149
hybrid contribution 0.638 -1.082 -1.158 1.708
sum -16.395 -1.516 19.979 25.889
Atomic orbital electron populations
1.22103 0.94217 1.03197 1.01936 1.20918 0.94432 0.96504 0.83973
0.92145 1.21842 0.94539 1.02334 0.96638 1.21442 0.95915 0.99890
0.97134 1.21603 0.93527 1.01156 0.98755 1.20877 0.94452 0.94066
0.88538 1.42629 1.04483 1.65283 1.26818 1.19607 0.85402 1.27758
1.05496 0.90958 1.25599 1.02207 1.01223 0.97814 1.69799 1.34733
1.41794 1.15598 0.85199 0.79898 0.77598 0.77001 1.20184 1.21878
1.20583 1.45841 1.66140 1.15004 1.08334 1.20810 0.78000 0.87157
0.85856 1.90856 1.51059 1.17885 1.85316 1.22592 1.10252 0.89765
0.80572 1.48445 1.32788 1.14538 1.14303 1.28815 0.99180 1.01653
0.81703 1.74870 1.14032 1.03206 1.27531 1.78659 1.13997 1.22467
0.96490 1.78958 1.16423 0.95997 1.17233 0.90303 0.94071 0.91145
0.88921 0.90055 0.93270 0.90804 0.91396 0.92817 0.97348 0.96115
0.79381 0.93874 0.73893 0.81872 0.77567 0.68765
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.85 9.48 71.98 0.68 -1.17 16
2 C 0.15 1.96 2.57 44.99 0.12 2.08 16
3 H 0.06 1.23 7.58 -2.38 -0.02 1.21 16
4 C -0.12 -1.51 4.75 30.59 0.15 -1.37 16
5 C -0.11 -2.05 5.10 30.60 0.16 -1.89 16
6 C -0.11 -3.13 5.33 30.59 0.16 -2.97 16
7 C 0.15 5.71 6.26 86.38 0.54 6.25 16
8 N -0.75 -38.23 5.60 -343.45 -1.92 -40.15 16
9 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16
10 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16
11 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16
12 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16
13 Si 0.97 45.97 29.55 68.60 2.03 48.00 16
14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
15 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16
16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16
17 N -0.70 -5.84 4.53 -442.55 -2.00 -7.84 16
18 C 0.50 6.33 7.81 87.65 0.68 7.01 16
19 O -0.57 -14.75 15.36 -3.04 -0.05 -14.80 16
20 C 0.09 0.26 6.96 85.63 0.60 0.85 16
21 N -0.30 -4.04 3.19 -355.56 -1.14 -5.18 16
22 C 0.18 1.88 12.79 180.27 2.31 4.18 16
23 N -0.35 -7.75 12.36 -60.29 -0.74 -8.50 16
24 N -0.12 -3.51 13.43 37.01 0.50 -3.01 16
25 N -0.10 -2.54 12.29 37.02 0.45 -2.08 16
26 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16
27 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16
28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16
29 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16
30 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16
31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16
32 H 0.07 1.23 7.75 -2.39 -0.02 1.21 16
33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
37 H 0.37 20.04 7.67 -92.71 -0.71 19.33 16
38 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16
39 H 0.42 0.37 8.60 -92.71 -0.80 -0.42 16
40 H 0.16 -0.27 8.14 -2.38 -0.02 -0.29 16
41 H 0.21 -2.11 8.08 -2.38 -0.02 -2.13 16
42 H 0.30 -1.47 8.06 -2.91 -0.02 -1.50 16
Total: -1.00 -92.17 360.70 3.63 -88.54
By element:
Atomic # 1 Polarization: 8.50 SS G_CDS: -0.47 Total: 8.03 kcal
Atomic # 6 Polarization: -10.97 SS G_CDS: 6.70 Total: -4.27 kcal
Atomic # 7 Polarization: -120.91 SS G_CDS: -4.57 Total: -125.49 kcal
Atomic # 8 Polarization: -14.75 SS G_CDS: -0.05 Total: -14.80 kcal
Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal
Total: -92.17 3.63 -88.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169044428.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.905 kcal
(2) G-P(sol) polarization free energy of solvation -92.165 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.740 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.536 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.370 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds